Array 1 33602-29565 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPX01000080.1 Serratia marcescens strain 1053 NODE_104_length_92845_cov_15.544661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33601 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 33541 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 33481 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 33421 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 33361 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 33301 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 33241 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 33181 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 33121 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 33061 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 33001 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 32941 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 32881 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 32821 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 32761 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 32701 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 32641 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 32581 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 32521 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 32461 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 32401 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 32341 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 32281 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 32221 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 32160 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 32100 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 32040 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 31980 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 31920 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 31860 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 31799 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 31739 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 31679 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [31633] 31632 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [31623] 31571 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 31511 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 31451 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 31391 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 31331 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 31271 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 31211 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 31151 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 31091 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 31031 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 30971 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 30911 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 30851 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 30791 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 30731 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 30671 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 30611 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 30551 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 30491 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 30431 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 30371 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 30311 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 30251 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 30191 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 30131 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 30071 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 30011 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 29951 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 29891 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 29831 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 29771 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 29711 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 29651 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 29591 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44825-42451 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPX01000080.1 Serratia marcescens strain 1053 NODE_104_length_92845_cov_15.544661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44824 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 44764 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 44704 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 44644 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 44584 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 44524 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 44464 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 44404 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 44344 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 44284 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 44224 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 44163 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 44103 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 44043 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 43983 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 43923 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 43863 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 43803 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 43743 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 43683 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 43623 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 43562 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 43502 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 43442 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 43382 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 43322 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 43262 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 43202 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 43142 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 43082 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 43022 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 42962 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 42901 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 42841 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 42781 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 42721 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 42661 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 42601 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 42541 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 42481 28 96.4 0 ....................A....... | G,A,A [42454,42458,42460] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //