Array 1 2200415-2199546 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065521.1 Schaalia sp. 19OD2882 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 2200414 36 100.0 28 .................................... TCGAGGATGAGGTCGATGGTGGTTTCGA 2200350 36 100.0 28 .................................... GCGGTTGCCATCAGTAGGTCACCTCCTG 2200286 36 100.0 28 .................................... TGCCGGTTTCGGAGTCCACGATGAGGGA 2200222 36 100.0 28 .................................... AAGGAGACCTTGTGGGGATACTTGCGCC 2200158 36 100.0 28 .................................... AGGGCAACCGGCGCCTGCTCGCGTGCCG 2200094 36 100.0 28 .................................... GGGTCGTGCGGGCGTGACATGATGATCT 2200030 36 100.0 28 .................................... CATCAGGAGGCCGAGCGGAGGACCGCTC 2199966 36 100.0 28 .................................... CTGAGGTTCGTCCAGCGGCGCGCAAGGC 2199902 36 100.0 28 .................................... CGGTCGCGCCAAGCGCGTAGTCGGACTT 2199838 36 100.0 28 .................................... CCGCCAGGAGCATCCCGGCGACCAGGTC 2199774 36 97.2 28 A................................... GCAGCGGCGCGTGCTGGCGGCCCGCAAG 2199710 36 100.0 28 .................................... TCTGGGGGCTGTGGGTTGTAGGCCCTAC 2199646 36 100.0 28 .................................... CGGTGCGCGCCACGTCCTCAAGCGAGCG 2199582 36 88.9 0 ..........................T..C....TT | G [2199549] ========== ====== ====== ====== ==================================== ============================ ================== 14 36 99.0 28 GAAGTCTATCAAAGGGAAGGGTGACTGATTCCCAGC # Left flank : GGTTTGACTGTTCCCTCCGCATTCTTGGCGCTTGCGCAGCAGTTCGGCCAGTACTGTGAGGGAGAGGTCGAGCGTCTCGCTGTCCCGCATTGGCGCGGGCCTTCGGACGACATGTCGATGGATGCCGCCAGTGGCTGATGATCCCATGTGGTGTCTGGTCATGTTCGACCTCCCCGTGACGACGAAGGAGCAGCGACGGGAGGCGTCGCAGTTCCGGCACTTCGTGATCGATCGCGGTTTCAGCATGGTGCAGTTCAGTGTCTACGTGAAGTACTGGCCGACTGGCGCACGCGACAACGGTACGATCCGGGCGCTTCAGGCGCACCTGCCAGCAGGAGGGCAGGTGCGGGTGCTCTACCTGACTGATCGACAGTGGGCGACGGGACTGCGTTTCGACAACACGAGGCGTCGGGAGGAGCCCGCGCAGCCGGAGCAGCTCCTGATTTTCTGACGTCAGACACCCCAGGAACGGCGGAAACAAGCCGTTCCCGGGGGTGCCA # Right flank : CGGTGGGAATGGGCTGTGGTGATGCTTGAAATACTGCCAGTGGGATGTGCGGCAATTCCTGCTTCAAATTGAGATTCCCGCTGAATGCGTCTCGATGGGGTGTCGGCATCGGTTGTCAGGTGTGAGCCCACATCGACCTGGAAAAAACAGCCCTCAATTGACTGAAGTGCCCCCCGATCCCGTCGTTCCGGTGCTCGTGTCGCCACCCACCCCCCGGAGTTCAACGGCGTGGCCCGGGCCCACTTCGATGGTGGCCCCGGAAGTCAAAGTGCAGGTGAACCTCCCGTTGCGCGCAGCGCAGATGCCGGCGTCTCCTGCCAAGGACATGCCGTCGGGCAGGACGGGGACCTGGTCCCACTCCCGCCTGCAGTACTGCGAACCGGCTTCCAGCTGAGTGCACAGCACCCCGATGGGCACATCCGACTGACAGGCGCCCAGGTGCACACCCGCGGGGTCCACCCACGCACTCCAGCCCTTGAAAGCGCCGGCCTTCTCCTCAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAAGGGAAGGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 2253958-2255432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065521.1 Schaalia sp. 19OD2882 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2253958 36 100.0 37 .................................... TGCCAGCAGCGGGATCCCAGAGCGGACACTGATTCGC 2254031 36 100.0 36 .................................... GACCCACAAAGGCGCGGTGTCCGACTCCAGGATGCC 2254103 36 100.0 38 .................................... ATGACCGTGAATGAGTGCATCGGGAGTACTGTGAATCA 2254177 36 100.0 34 .................................... CCGGTCGCATGGTCGGTTGGGCGACGGACACCGG 2254247 36 100.0 38 .................................... TCGTGACCGTCGATGAAGAGGCCGGCGTGGCCGGCGAA 2254321 36 100.0 37 .................................... CGAGGCGGCGCTCCAGTTCCTCGTTGGAGACCGTCAG 2254394 36 100.0 34 .................................... CGGGCACGGTGGCCGTCACCGATTGGGTGTCCGC 2254464 36 100.0 37 .................................... TCGCCACGCCCAGGTGCGCGAGCTTCTGCCTGCCCTC 2254537 36 100.0 36 .................................... CTCCCACAGCATCCGGTACCACTCGCGCTGCACCGC 2254609 36 100.0 36 .................................... TGCCGGCGCCGTCGTCGTCGACCTGCCGTCGGACCA 2254681 36 100.0 36 .................................... TCGCGCGTCTGCCTGCCAGTAGGTTGCATCATCGGC 2254753 36 100.0 36 .................................... CAGGCGGTAGGCCCCGTTGTGCCCCGACAAGATCAC 2254825 36 100.0 36 .................................... AGCGCGACGGGCCTCACTGCCATGAAGAAGCGATCC C [2254847] 2254898 36 100.0 38 .................................... AACGCGAACATGGCGCCCCAGGCGGCGTCGATCTTGCT 2254972 36 100.0 36 .................................... AAGCCCACAGATTCGGTCCACCTTCTCCTGGTCGAG 2255044 36 100.0 35 .................................... GCGGCCGTCGATGCGTCCGGCGAGGTGCTTAACCA 2255115 36 100.0 35 .................................... TCCGCGGCGACGCGGGGCAGGGAGTTCCTGCTGGG 2255186 36 100.0 35 .................................... GTCAGGTTCAGCACGCCGCCCTCCTCGACCTGCGC 2255257 36 100.0 34 .................................... ATCCGTCTACTACAGGGCATCAGACGCCCTATGG 2255327 36 100.0 34 .................................... ATTCCTGATCCTCCGCGAGCGCGTGAATGTTCGC 2255397 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 21 36 100.0 36 CCCTCAATGAAGCGCAGCCCCCGAAGGAGCTGCAAC # Left flank : GACGATTTCCCTTTGATCGATCTCGAAATTCCGACTCGACGCTTGGTGACACCTGTGCATTTCACAAGGCGGGCACATCGATGTTTGACCGCACGTTGTCGATCGGGGTGTCACGATCGACCGACTCGGGTGAAGTTAAGCATCCCAAGGCGAGAAAGGCTCATGCATGATCGTCCAAGCTCGCACGCGACGAGCCGAGGGCTGAATGCTCGATCAGCATGTCGCCGTTGACCAACATCTGCTCACGCCCCCTTACACGAGATCGACCGCACGCCGCCGGAAAGCAATCAGATAATCGCACTTCCCATCCGAGTCATTCGGAGCAAGGTGACTCACTCATACTCGGATCGGTCCGCAGGCGCTCTATTTCCGCGAATTCAGGACGTAGACACTGAGCAGCAACGGCGCCTGGATCCACGATTTGACACATGCTTCCCTGTCTCCGCTTCCAACTGACGATGGCATCGAGAAGTCCGCCCAAGTCAACGCAATCAATGCGT # Right flank : CCGTCCCTCGAATATACCGCAACCTGCCACCGTTTCCCCATCGCCTTGCGAGAGCTCCGGTCAGGTGATCCCCGCGTAGAAACGGGCAACACGAAGACGAGGCCGTCAGCCCCGTCTTCTCTGGACAAACTGGGGGCGAGCGCTGCCCGGAGAGGGGCGCAGGACCGGAGCGCTCGCTTCAGGCGATCAAGGGTCCATCGGGCGTGATCGTTCGCGTCAACCCAACATAGGTGAAGCGCGTCTCGTCCACGGAAGAGAGAAGTCCCAAGTCGCACATGAGGATGGAATCTTCGGATCGGTCGACAATGCTCTCGAGTTCGCCCCGCAAGCGGAGAACGCGAGCGGGCGCCGCGTCAACGACGAAGACCGAATACTGGATCCGATCCCCGTACTTGAGGAGTTTCTTCGCCACTCGGTTGCGACGCCTGTCGCAGGGGACGTCGTATGCGATCAATACTCGCCGGACATCATCACGCATCAGCGAACCACTACCCCTTTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAGCGCAGCCCCCGAAGGAGCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //