Array 1 10575-9265 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFUD01000027.1 Escherichia coli strain JML250 sequence027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10574 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 10513 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 10452 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 10391 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 10330 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 10269 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 10208 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 10147 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 10086 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 10025 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 9964 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 9903 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 9842 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 9781 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 9720 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 9659 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 9598 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 9537 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 9476 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 9415 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 9354 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 9293 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGCCAGCGGGGATAACCATTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGTCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11837-12414 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFUD01000028.1 Escherichia coli strain JML250 sequence028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11837 29 100.0 32 ............................. AAAAAAAACGACGATTTAATCACTTTACCATC 11898 29 100.0 32 ............................. GCTTCACTGATTTCAGTAACGGCTTTGATAGC 11959 29 100.0 32 ............................. CAGGGTATGAAGTAGGAGAGAAGGCACTTCGT 12020 29 100.0 32 ............................. TATCTTATAAAACCGGCACAGAGAAATATTAC 12081 29 100.0 32 ............................. CACTAATATCAACAATACCGTGGCACTGTATT 12142 29 100.0 32 ............................. GACTTTTTTAATATTCTGAAAAAGAAAAAAGG 12203 29 100.0 32 ............................. TCAGAGACGGCGTTCTGTGCTTCCGTCGTGTA 12264 29 100.0 32 ............................. TAACCGCCACCGTCCGGCAGGCGGATGAAGTG 12325 29 100.0 32 ............................. ATTAGATACTCCGTGTCCCAAATAAGGAAAAA 12386 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : AGCGGTCACCGGGGGCGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCTGCAAATCACCCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGGTACAGTTGGTTTCGTTTCTTCCTTTTGATAATCAATAAGTTATCCGTTATTAAAAAATAAGTAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGACTATGGCAAGTGCGCGATGGTC # Right flank : GGCTCACTCTGATGCAGTTTATGTAATTCACGAGTGTTCCCCGCGTGCGTATTTTCATGGAAGGAGATCAGTGAAGGTAATTTAAAAATGCCGTTACTCACCGATCTCCTTCACGATAATACGCAGTCAGTTTGCAAATAATCCCCCCATCTTTTGCAATAGACGTGTTTTCTCTGGTGGGGTGATTACCCAGTCTTTTTTACTGTGTCTGACCTTTTGTACTGTAGTGCAGTTGTAATGCAAACCTCCCGGGCTTTTGGGAGACAGCATTTCAGTCCTGGTTCCATCATTACCATTTTGTTGATTCGAAACGAAAACCTTCATCAAAATCGATCGATTTTACCGATCGATATGATCGCATCGATCGGTTGTAACCATTTTACCCTATCTTTTGCATGGTTTTAAAATAGGCAACCCTATTTGTCGGGTAGGGTAAGAACCAACGGAGATGATTGAAATGAAAAAGGTTATTGCGGTTTCAGCGCTTGCAATGGCTGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7909-8303 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFUD01000065.1 Escherichia coli strain JML250 sequence065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7909 29 96.6 32 ............................T GACAACTGAGTGCCGCCTTACATGCCGCTGAC 7970 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 8031 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 8092 29 100.0 32 ............................. TGGCTCTGTTTTTGCGACAAGCGCAAGGTATC 8153 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 8214 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 8275 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //