Array 1 362235-362067 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVQZ01000001.1 Streptococcus chenjunshii strain Z1(2018) Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 362234 36 100.0 30 .................................... GTGTTTCTCGTCCTCAGCTTTTTAAAGTTT 362168 36 100.0 30 .................................... CTACACGGCCAATAGGAAAACCTACAGTAG 362102 36 94.4 0 ................A.................G. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 98.1 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CTAGAACTTATTAAAGTTTTGGGGGTAAAAGTAGAAACAAGCAGTGATACTGTTTTTGAAAAGTGCTTGGAAATTTTACAAATTTATAAGTATCTTAGTAAAAAACGTTTGTTAGTCTTTATCAATAGCGGCTCCTATTTAACAAGAAAAGAGGTTAAAGAGCTGCTTGATTATATTAGCTTAACCAACCAAACAGTCCTTTTTCTTGAACCGCGTAAGCTCTATGATTTTTCTCAGTATATTTTAGATAGAGACTATTTTTTAATTGATGGAATAAAGCATTAGGAAGGATTGCTGGAGCTAATACCGATAATGTAAAAGGAGTTTAGCTGCTTGTTTTGATGAAGATCAGAGCATCAATAGAAAATAGCGCTGAAACCTTGATTTTAAAGCATTTTTTAGATAAAATAGAAGTAATAAAATGGAACTGTTTGATACTGAAGTCTGGCTGGGACGAATAGTGCGATTACGAAATTTCGTAACAAAAAATGTTCTACGAG # Right flank : CAAGAGCACTGCAACTGCGTAAGTGCTAGTAGCCCCAGTCCGCTGGTTTTAGGATTTGTGTTCTCTTCTTTCCTTGCAATCTGCCTTAGTTAGCGGTACAATAGGGGTGAGGGAAGCGTGCTGCTTCTTCCTGAAAGGAGGTTGTCTTATGCTTTACTTAACTGTTTTTTTGGTTTCTCTTGCTTTGCTGGTAGCAATCGGAATTCCTTATGTGATTGATTTGTTTAAAGCAATGGAAGCCTTTAAAAAAGCCGATGGTGAATCTCTCCACAGTCAATTATGGGATATGTTCGGATTTCACCGTCATTTGCATGGATAGGCAGGTTTGCCTGCTTTCAGATGAGAGACAGATTTTTTTGGGTCTGTCTCTTTTTATTAAGGGATAAAATTCGTTAAGAAGTCCCTGATTGCTCCTGCTATGATGAATAGAAGAGGGCAGCCGGCTGTTGAGTTGTTAAAACTTTCGTCCGTTACGGCACTTCGTCAGCAGAGCAGCAGAG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 375623-374807 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVQZ01000001.1 Streptococcus chenjunshii strain Z1(2018) Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 375622 24 100.0 37 ........................ CTAACTAACCTCTGTCATTCTATGTTTTTAAAAATTT 375561 24 100.0 37 ........................ CAAACTGATCTTTATTATCAACGACGTGTGTCCATTT 375500 24 100.0 37 ........................ TAATCTGATTTTGGAAATAGTGAAATACCAATCATTT 375439 24 100.0 37 ........................ TAGAAAATCTTGGCGCTATGGGTATGCCTTACCATTT 375378 24 100.0 37 ........................ TGGGCAGAATTTCAAGAAGCAGGCGTATTGTTTATTT 375317 24 100.0 37 ........................ TTCATTTGAGCTTAGCTTTACCAAATGGTAAATATTT 375256 24 100.0 37 ........................ TGACTACGATACAGAGACTGTATATGTTGACAGATTT 375195 24 100.0 37 ........................ TAGATTGTGTGTAAGTGTTGCGATACCTTCTGCATTT 375134 24 100.0 37 ........................ CAAACAGCTCCGCCTACTGGCTGATCACTGAAAATTT 375073 24 100.0 37 ........................ GGTTTCACAACCTCAAATTTGATGCCTCTTTTAATTT 375012 24 100.0 37 ........................ TAACCGTCCTCAGTCTTTTCATAAGGAACACTAATTT 374951 24 100.0 37 ........................ CGAACACAAATCGTAAGGAATAAGAAAGGTTGAATTT 374890 24 100.0 37 ........................ CTGATGGACAGCGTCAAAGGAGACTTCTACCTTATTT 374829 23 91.7 0 ....................-.G. | ========== ====== ====== ====== ======================== ===================================== ================== 14 24 99.4 37 TACCCGCACACGCGGGGGTGATCC # Left flank : ATGAAAATACTATTATAGAAATAGGAGCAATTAAAGTTAATCAAAATCAGATCGAAGAATTTGAGTATTTAGTGCACTACGATAAGGCGCTGCCAAAGAGTATAAGCCGGCTGACCGGGATAAGTCAGGAACTTTTGAATCGTGAAGGCATGGCCCTTTCGACTGTATTACAAGAATTTTTAAATTTCATCGAAAACCTGGACCTGATTGGTTATGGTATTAATTTCGATATAAAATTTATAAATAGGGAATTAGCGCAATTAAATTATCCTTTGTTGAAGAATAAAACGCATGATTTAATGAGAACTGTAAAAAATGAAAAGCTATTTTTACCTAATTACAAACTCCAAACAGTACTAAAGGCATATGGTATCGAAGAGAAAGTACCTCACAGGGCTCTTCCAGATTCAAAACTCATTTATAAGCTATCTACTAAAGTAAATAAATTTTGGAAGAAGTTTAATCATGAATAGCGACTTTATTGGGATCTTTTAGTATTT # Right flank : TCCTGCCGGAATTTTTCTACCATTGGTCAAGTTCCTTAAGGGATTTTCTTGAAAAAATGTTTTAATCGGCTATAGTTAGAGAGTGATTTCAGCTGTTTTTCTCAAAAAGTGCAAGCTAAAATAACATCTTACTTTGTCATTTCTTTGATAGGGTGTTAAGTGATATGGCAATAGATAAACTTGCTGATTTTGGGCTAATTTGTAATTGTAATATTTGTACACTCAAAAAGACTCCACAATCTCTGTCGGGGGTTCCCCGCTACAGAAATTATAGAGCCACTTAAATTTAGGCTAAGTCCGTTTTAGTTGTTTTCAAATGATTCAAATCTTTTTAGCAGTCTGAGCTATCTTAGCTAGTTTCTTTTGACGTTCTTGGTCACTGATTTTTTCAATTCCAGTTAGCTGATTGATTTTAACCGGTCGAATGCCGCAGCTTTTCAAAATCTGCCCCTTTAAAACTTTTCCGTAATCCTGAGCAAAGGGTGTAATAAAAGCCGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //