Array 1 1830-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQP01000120.1 Actinomadura chibensis NBRC 106107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 1829 30 93.3 31 ........................C....A AGGGCTACGGCGCCGAGATGGGCCAGGTGAC 1768 30 90.0 31 ........................C...TA GGCCGAGAGTGAGACCGACTTGGACGCCCGC 1707 30 93.3 31 ........................C....T CACCGCCGTGAAGAACGGCGCGGTTGGCGTT 1646 30 100.0 35 .............................. AACTCCGCCGCCGCGCGGTGGAACAGGCAGCCGTG 1581 30 93.3 31 .................A...........A CTCCCGGCCGCCTGCTCGACGCGCTGTCGAT 1520 30 96.7 31 .............................T CGGGCGCAAGACCGCGCAAGGTGAGGTAGTT 1459 30 96.7 31 .............................A GGTCGTAGCCCGAGATCGGGCCGACGATCGG 1398 30 100.0 31 .............................. CGATGTGGGAGAGCGCCACGTAGGAGCCGGG 1337 30 96.7 31 ....................A......... GGTCGTCGAAGGCCGCACTGTCGGCTAGGAC 1276 30 86.7 31 .A.T.T..........T............. TGGCGGCGGGCAGCGTGCGGTCGTTGGAGGG 1215 30 90.0 31 ..........T.................TA GCGGTCACCGCCCGCCCGCCCGGAGACGCCT 1154 30 93.3 31 ...............A.............A GCTTGACCTTGAACGTCTGGGCGGAGTTTTT 1093 30 93.3 31 A............................C CGGCCTGGCCCGCGACCAAGCTCCAGCTCGG CGCG [1076] 1028 30 93.3 31 ..............T..............C TGCTCTACGCAGGCGCGGAGCACGTCATCCG 967 29 93.3 31 ....................-........A AATGGCTGCGCGACCCGAACGCACTGAACGG 907 30 100.0 31 .............................. CTGGACTACACCGGATAGGCCGCCTTCACCC 846 30 93.3 31 .................A...........C ACGCCGAGCTCTTTGAGCCGCGCTTGCTGGG 785 30 100.0 31 .............................. TCCCAGCCTTGGTGGTGACTAGCCTGTAGGA 724 30 93.3 31 .C...........................C CGGCGGGGGCCGTTTCTCAATTCCCGGGACC 663 30 100.0 31 .............................. TCAACACCCGGTTCTGCCTGAGCGTGGCAGA 602 30 96.7 31 .............................C TCACCAGCACCAGGAGCGGACTTGTCCCCGT 541 30 100.0 30 .............................. TTCAGCTTCCCGAGGACCAGACTCGGGAGA T [513] 480 30 93.3 31 ........................C....A CCCCCGGGCCCTCCATCCTGCGTTGGCGCAA 419 30 86.7 31 A.....T.......A..........C.... TCCTAGTCTTGGTGGTGACTAGCGTGTAGGA 358 30 83.3 31 .C...T...A..T................T CAAAACGGGTTGTCACATGCCGCGCACCCAC 297 30 93.3 31 ..............A.........C..... CCGGATTCACCTGGGCCAACCCGTTCACTAG 236 30 90.0 20 .......T...A..............G... TCCCTCAGTGGACCTGTGAG G,GC [206,210] Deletion [187] 183 30 100.0 31 .............................. TGCTCGGCGTCGAGCGTCGGCGTGAGGCGCC 122 30 96.7 31 .........A.................... TCTGCGAGGTCAGCAGCTTCGCCAACAACTT 61 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 30 30 94.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGACACCCGGCCCCCACAACGACGACTGCG # Right flank : GGGCAGAGCACGCCGACGTGGACGCCGCCCGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [10.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36902-38642 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQP01000056.1 Actinomadura chibensis NBRC 106107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 36902 30 96.7 31 .............................T GGGACCGCGCCGGGCTGTGGTGGCTGGTCGT 36963 30 100.0 31 .............................. TCCGCGTCCAGGACCTGTCGGCCGCCCCGGC 37024 30 96.7 31 .............................G ACCACCGTGTGCGGGGTGGTGGTCCGCCCTC 37085 30 100.0 31 .............................. TGACCGCCGCGTACGTGGTGAAGGCCGCGTC 37146 30 100.0 31 .............................. CCAGCGAGCAGGACGGCGGGGCCGCCAACAG 37207 30 96.7 31 .............................T GTGGGAACGTCCCAATTTCACAAGGGGACAG 37268 30 96.7 31 .............................C GGGAGCCCTTCGACTGGGCGGCCGCGCTGGA 37329 30 96.7 31 .............................G CGTAGGTCAGCGGTTTTTGAGGGTCATGATC 37390 30 96.7 31 .............................C GGGAGCCCTTCGACTGGGCGGCCGCGCTGGA 37451 30 96.7 31 .............................C ACCCGGAGAAGACCCCGTGACGGCTATCTGG 37512 30 93.3 31 .....................G.......C GGAACCAGAGACCGCCAGCCATCCTTAGATG 37573 30 93.3 31 .....................G.......G TCCCCGGCAAGGGTCACTTCTTCGAGGAGGA 37634 30 93.3 31 .....................G.......G AGGTGTGGCGGCACCTGGAACGCCACGAGCG 37695 30 93.3 31 .....................G.......G CGTCGTCTTCGGGCCGGGACACGTGCCCGGC 37756 30 96.7 31 .....................G........ ACGGCACTGGTGCGGCGACCGACCGCTTCAA 37817 30 90.0 31 .........T...........G.......C GGCCTACGGGACCGGTCGTGAGCACCCTTGA 37878 30 93.3 31 .....................G.......C GTCCCGAGGTCCACGACGAACAGCGTCGTGA 37939 30 86.7 32 ...................C.G......AC CCCGTCAACAACCGAGTCACCGCCCCCTCACG 38001 30 93.3 31 .....................G.......G GCACGGCGCGCTTCCGGCCGCCCTTGCCCTG 38062 30 96.7 31 .....................G........ AGACCGGCCGCATCACCGAAACCAGTGACTA 38123 30 93.3 32 .................C...........C CGGCCGCCGTGGTACTGCTCTGGTTCGCCGTT 38185 30 100.0 31 .............................. CGAACCCGAAGGTCCGATCGGCCAAGGTCAT 38246 30 96.7 31 .............................C GCGGCGCGGCGGAGTTGCTGGTGGAGGCTGG 38307 30 96.7 32 .............................G TCATGGGCTTGTGATGACCGGCGTCCGACAGG 38369 30 100.0 31 .............................. CCGGCCGCGAGGCGTGTCCCGACAACGGCCA 38430 30 96.7 31 .............................G TAGACGTGTCGCTACGTTGCTCCCCGTCCCC 38491 30 93.3 31 .........................A...G GCGAGATCGAGCGGCGGATTGTCGCGTTCGA 38552 30 80.0 31 .........AG...T..........AA..T ACGGTCCCGCGTAGGAACCGGCCGCCGCACC 38613 30 93.3 0 C...............T............. | ========== ====== ====== ====== ============================== ================================ ================== 29 30 95.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : CCGCGACCCGGCGAACCCGGCCCACGAACTGCGGAATCTGGTGGACGACCGCATCGGCGAATGGGCCCGCCTGAACCGGCTGGTGTATCGTCCGCGCGCTCACCTACAAGGCGTCCAAGAACATCGAACGCTCCGACCTGCGCACCTGACTGTCCACCGGAACCGGCCTCGCCGTCATTCGCCTACCCGCCCACACCTCTTAGGAGGCCATCTAGCCTTTGGTCGGTTGGCCGCGCCCTGCTACACCACCAACGACGAGCAAGACTCCACCTTCGAAACCCGCGACCGCAAATGGCACTCCATCGACCACGACGGCCCGAACCTGCTCCACCACCCGAAGACCCAGTCGACCATTTCTTCCGAGCCCCCTTCTGCGGGCTGGAGCAAGGCATCAAGACGCCGATGCTACGGCCGCCACTGACCCGAGCCCGAAATGTCGGAATCTGCGAAAGTGCTTCAGAACGGCCCAACCGCTCCATAGAGTCCCAGGTCAGGAAGAG # Right flank : AAGCTCGGTTCCGGCCACCTCTGGCCCACGCGATGGAAGGCGTTCGGGGTGCCGAGGTCGGTGTGCGGGAACCCCGCATGGGGATCAGCGCGCGCCAGGGACCGTCCCCGCGTCCGCGGGGAGCATCGCTCATGGTGTCTAGGCTCGGAGCGCAAATGGCACTCCATCGACCACGACGGCCTGAACCTGCTCCGCCGCCCGAAGACCCAGTCGGCCATTTCTTTCGAGCCCTCGCCTGCGGGCTGCAGCAAGGTATCAAGACGCCGACGCTACGGTCGCCACTGACCCGAGCTCGAAATTTCGGAATCTGCGAAAGTGCTTCAGAACGGCCCGACCGCTCCATAGAGTCCCAGGTCAGGAAGAGCGCTCCCCGCGCACGCGGGGGTGGTCTTCTCGGGAAGATCGTGAAAGGGGCCTCCACGCCGCGCTCCCCGCGCACGCGGGGGTGGTCTCTCCCAGCCGTGCACCTCGGCACTCTGCCGGTGGCGCTCCCCGCGCAC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39005-39398 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQP01000056.1 Actinomadura chibensis NBRC 106107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39005 29 96.6 32 ............................T CTCGGGAAGATCGTGAAAGGGGCCTCCACGCC 39066 29 100.0 32 ............................. TCCCAGCCGTGCACCTCGGCACTCTGCCGGTG 39127 29 100.0 32 ............................. TCGGCGTCCTGGCGGGCGTCCACCGCGCCGTG 39188 29 100.0 32 ............................. ACGGTCGTGTCACCACACGCGGAACAGCGGAA 39249 29 96.6 32 ...........................C. CTGCTCGATCAGCCGGAACAGGTACGGCGGCC 39310 28 89.7 32 .T...............-.........C. GCGCGGCGGGCGCGGACCAGCAGCATCGTGTA 39370 29 89.7 0 ..........T.....T....A....... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GCGCTCCCCGCGCACGCGGGGGTGGTCTC # Left flank : CGCGGGGATGGACCCGGCGAGATCGAGCGGCGGATTGTCGCGTTCGAGTGCTCCCCAGGCATGCGGGGATGGAACCTACGGTCCCGCGTAGGAACCGGCCGCCGCACCCTGCTCCCCGCGCACGTGGGGATGGTCCCAAGCTCGGTTCCGGCCACCTCTGGCCCACGCGATGGAAGGCGTTCGGGGTGCCGAGGTCGGTGTGCGGGAACCCCGCATGGGGATCAGCGCGCGCCAGGGACCGTCCCCGCGTCCGCGGGGAGCATCGCTCATGGTGTCTAGGCTCGGAGCGCAAATGGCACTCCATCGACCACGACGGCCTGAACCTGCTCCGCCGCCCGAAGACCCAGTCGGCCATTTCTTTCGAGCCCTCGCCTGCGGGCTGCAGCAAGGTATCAAGACGCCGACGCTACGGTCGCCACTGACCCGAGCTCGAAATTTCGGAATCTGCGAAAGTGCTTCAGAACGGCCCGACCGCTCCATAGAGTCCCAGGTCAGGAAGA # Right flank : CAAGCTCGCGTCCGGCTACCTCTGGCCCGCGCGATGGAACGCGTTCGGGGTTCCGAGGTCGGTGTGGGAACCAGCGTGCGCCAGGGGCCGTCTCCGCGTTTCGGGGAGCGTCGTTCGTGGTGCCTAGGGGCGGTTTGCCCGTGGCGGCGGCTATTCGTCGGTGCTCGGTGGGTGTGGGCTGCCTCGATGGCCACGTTGGTGAGGCCGTCGGGGCGGGGGTGTGCCCGGTCATGGCCATCGGGGTTGACAGGGGGTGGGGAGGCGCGAACGCTAAAGCTCATAAGCTTCTAATCAATCGCAGGGGGCGTCATGGGGCGTGGGGCGCGGTTATCGGGCGGTGGGCTGGCGGTGCTGCTGCTCGGGCTGGCGGGTTGTGGGGGTGGCGGGGCCGGGCGGGCCGAGGGGGCGATCACGGTGTGGGACTACTACGGCGGGTCCACGCCGATCAAGCCGGTCATCGCCGAGTTCGAGCGGGCCAATCCGAAGATCAAGGTGAAGTA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCACGCGGGGGTGGTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 64385-64050 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQP01000056.1 Actinomadura chibensis NBRC 106107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64384 29 100.0 32 ............................. GGGTTGAAGGGGCGGCCGGCCGGGGGTGGGCG 64323 29 96.6 33 ............................A CATGTACGGCGCCCCGGCCGCCGGAACCGACGG 64261 29 100.0 32 ............................. TGGTCGCGGCAATGGAGAACCTGTGCGACGGC 64200 29 100.0 32 ............................. ATCTCACGCGTCGACGAGGGCTGGCGGGCGAT 64139 29 100.0 32 ............................. GTTTACCAGCAGGTACCGCACCCCTTCGGGAC 64078 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : CCTGCGCCTGATCACGCACGCCTACCTCGGCACCCCGAACACTCACTTCCATCGCGTGGGCCGGAAGCGAGCTCGGGACCATCCCCGCATGTGCGGGGAGCACCCCGTCGACAGGCTGGCCGAGGAGCCGGGAGCGGGACCATCCCCACGTGCGCGGGGAGCACACACCGGGTAGCGGCGCGAAAGCGAGTCCCTTCCACGACGTCAACATCAGCCAAGGCCTGCCATTGATGGCTACTCACACATCGCTTCCCTGGAGACCACTCCAAGAGGCGCCCCCGCACTGGCCTTCCAGCACAGAGCTGGTCTCTTCTGATCTCGGCCGTGGCGGCGCGCCAAACAGCGCGGACTAGAGATGCCACTCGTAAGCTACTCATCGACCATAACCCGAGAACTAGGACAACCGCACGCGACGCCGAATCGGCTGCCCGAAAATGCCATCACCCAGAGAAGTGCTTCAGAACAGCCCCACTGCCCTCTAAAGCCCCAGATCAGCAAGA # Right flank : TGCTGACGCATCTTCCCGCCGTCTTGCGTGTTGCGCTCCCTGTGAGCGACGTCAACAGACTCGATATCGCTGTGGGTTTCAGCGGTGCCGGGGGCGTTGGATGCCGACGATGGCGCACACAGTTTTGGCTTCCCTGTTCATCTCCGCGATTAGCGCTGAGCGGGCCCGGATCTCTTGTTCCAGGAGGATGTTCCTTTGTTCGAGTTCGGCCGTTGAGTTTGAGGACGGTGCCGAGTTGGCGTTCGAGCGCTTCGGCTTGGGATGTTGGGTAAGAGTCTTGAGGGCGGGGTTGTCGAGCAGACGGCGGACTTGTGACTCTCCTGGTGAGCGCGAGTCCGTGGTGTGACCGCACCGCGAGCTGGTCATCAACGACTCGGCCCGGATGGACGCCCTCGTGTCCGGCCAGGTCGGCTCCATCAACCAGGTGCAGTACGCGCAGATCCCCACCATCGACGCACCGGCGACCAGGCTGAGCGGCTGCGGCTCACCTAGCGGATGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11220-12584 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQP01000095.1 Actinomadura chibensis NBRC 106107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 11220 30 100.0 31 .............................. GGTGGCCGGAGGGCGCGCCGCTGGCGGTGCT 11281 30 100.0 31 .............................. CGATGTTCACCCCGTCACCCGCCCCTCGACC 11342 30 100.0 31 .............................. CCTCTTCGAGGATCCCCCGGACGATGCGCTC 11403 30 93.3 31 ............................TC TTTACTGTTCAGAGCCCTATTTCACTCTCTG 11464 30 96.7 31 .............................G AGCCGGACGCCTCCGCCGCACCGGCGGCCGC 11525 30 96.7 31 .............................A ACCCGGACCGGCTTGACGTCATGTGGGCTGC 11586 30 96.7 31 .............................G GGGGCGGCCCCTCCCCCAGTCTTTCAGCTAT 11647 30 96.7 31 .............................G GCTCGGCGTCCACGTCACCGCCGACGCTGTC 11708 30 96.7 31 .............................G GCAAGGCCCACGGTTTCGCGACTTCGAAGGG 11769 30 100.0 31 .............................. TCCGCCCGGCGCGCAGGCCCTCGCCCTCAAG 11830 30 96.7 31 .............................A CGATCAAGATCGTGTGGATCGCGATCCAGAT 11891 30 96.7 31 .............................A TCCTCACCGCCCGCGGCGCGCTGAAGGGCGG 11952 30 96.7 31 .............................G CCTTCTGGTAGGTGGAGATCCCTGTGGCGTT 12013 30 96.7 31 .............................C CCATGGCCGTCACCTCCACGCCGACACTGCG 12074 30 100.0 31 .............................. CGGAGATCGTCAGGCGCCCGTGCTTGTCCCA 12135 30 93.3 31 ............................TG AACAGGCCCGCGTCACAGGAAAGGGCTGAAC 12196 30 100.0 31 .............................. AGGGACGTACAGCAACAAGATCGGTCGGGAG 12257 30 90.0 31 .........A..................TC GGTCCGCGCGGGCGGCGGCCCGGTTAGCGGA 12318 30 96.7 31 .............................C GGGGGTGGCTGCAGGAGCGGCTCGGGTACGC 12379 30 96.7 32 .............................C GGCGACCGCAGGTGGCGCAGACCCACAACGCG 12441 30 93.3 31 .......T.....................C CGGACGACTTCGAGAGGCACACGGCGCTCGG 12502 30 86.7 22 .........................CGT.G TCCGCGCGGGTACCCGGCTGGT Deletion [12554] 12554 30 90.0 0 ..A..................A.......C | C [12579] ========== ====== ====== ====== ============================== ================================ ================== 23 30 96.1 31 GTGCTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CGATGATCACCCGTCAGGTAAGGGCCCCGCGCTGTGGCCAGCACCACACCAGCCCTCCTCCCGCCCCGGCCGGAACGACCCGTCACTGCGCGACGAGGGCGCCTCGCCGTCCGACGTCCCGAGCCTGGACGACCAAGAGGCATGGCTACTCTCGGAACGGACGAGGGACTGACCCAAGATGCGTGGGCATACGCCTGCGCGGCACCCGAGCCTGACGACCATCCATCCCCGCGTGCACAGGGAACACAAGTAGCCCGCGCACGACGACACGCGCGTCTCCCATGAGCCCGGCGCTCCCAGGGACGAGTCTCTTCTGATCACGGCCGTGGCGGCGAGCCAAACAGCGTGGACCAGAGATGCAGCCCATATGCTCTTCTCTGACCAGAACCAGGAAAGTAGGACAACTGCACGCGACGCCGAATCGGCTGCCCGAAATGCCCCCACCCGCAAAAGTGCTTCAAAACAGCCCCACCGCTCTCTAAACCCCCAGGTCAGGAAGA # Right flank : CTTACCTAGACAAGGCAGGCGCCTGCACGTCGGAGAGACGAAGTCGGTCCAGACGGAGGTGCCCGATCCTCGGTTCCAGGTGGACGACGAGGTGAGTCCGGTTGGTGCGTAGCGCATGTGGGCCGGGAGATCTTGGACGAGACGGAACCCAGGACCTGTTGGACTAGTCCAGGTTCTTGACGGTCTCACGAGTTCGTGGACGCTGCTCGCCGGGCCGAGCCAATAGAAGCAAGGGCGTGGCGGGATCGCCTTTTACCGGGGACGGGGTGGGTTGGCGCACTCTTTCCAGGCGAATTCATAGACGTCGGCGTAGGGCAGTTACATAAAGTTCTTCTTGGACTTGTCCGAGGTGCCGATGTCGATGAGCATACCCGTCTGGATGCGGATGAGGGGTTCCTCGCTGCAAGGTTTGTACCTAAGTTCGGGACGCCTGGCGTGTTCTCACCCGTCAGGGGCTTCAGGTGTCTTGACCAAGCAAGAGTTATCCCGCTTCTCTCGTC # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24786-25608 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQP01000095.1 Actinomadura chibensis NBRC 106107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24786 30 96.7 31 .............................A GGTGCCGGTCGAAGTGCAGGACGCCGATCTT 24847 30 100.0 31 .............................. CCGGTCAGGTGGCCGCCGTCCTCGGCGTCCT 24908 30 100.0 31 .............................. ATCACCGGCCCTAGGTTTTCGGCCATGCCGG 24969 30 96.7 31 .............................C TCCGCATCGAGGGCCTCCTCCCCGGCACCGA 25030 30 96.7 31 .............................T GGCAAGCCGCGATGTCGGCAACGGTGGTGTG 25091 30 100.0 31 .............................. GGAAGAAGAGGCTCGTCAAGGTTGTGTTCGA 25152 30 96.7 31 .............................T TGGCGGAGGTGACTCCGCCCTGCATCAAGAA 25213 30 96.7 31 .............................T TCTCAAGGTTGATGTGACCGAGGTTGCATGC 25274 30 100.0 31 .............................. ACACTGCGGCCTGTGCAACCTCCGGCGCGGC 25335 30 96.7 31 ............................A. GTTGCTGTAGGCCCAGGAGCCTCCGTAGGCG 25396 30 93.3 31 ............................AC TCGGGATTGTGCCCTGATGGGTCCCGCTGGG 25457 30 93.3 31 ............................TT TCCGGAAATCGGCCAGGAGCACTCCCAGGTG 25518 30 100.0 31 .............................. GGCCAGCGGCGCCCTTCATCGACTTGCCGTG 25579 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 14 30 97.4 31 GTGCTCCCCGCGCACGCGGGGATGCTCCCG # Left flank : CGCCCCCTGCTTCGTCTTCGAACACAAGCGGAGTCAACACGATGGAAGCGATCATCTTCTCCCGGTCGGCACCACCGACCACAAGAGGCCACTTGAGCCCTCAACCTCACCGGCACTGGAAGTACCACACCTCTGCATAAATTGGGCAGACCAGACAGATCTATGACATGCCCCCGAAACACCAAATCGCGCGCCGAAGCGGGCCACCGCCAGTTCGCTAAGATCCAGCAACCAGAGCCACTCACACAGCGCATCTCCGGACACCCTCAGAGATGGCACCGCCGCCCACCCTTCCGCGAGGCAGCACTCTTCCGATCATGACCTTGAGCACGAGTCGAACACCCCGGGCCGAACCAGCCGACCACAACTCCTCACCAGCCACCAAATCCGGCGAACCGCAGACAACTCATACGACATCAACCCGCCCACCCGAAATGTCCTTTTCAGCAGAAGTGCTTCAGAACGGCCCAACCGCTCCATAAAGCCCCAGGTCAGACAGA # Right flank : TCACGCCACCGCCTGACCGTCCCGGTGGGT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGCTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75086-72321 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQP01000043.1 Actinomadura chibensis NBRC 106107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75085 29 96.6 32 ............................C GTGAACGTGCATTTCACCTCCTAGGCGCACGG 75024 29 96.6 32 ............................C CGCTCCGCCGTGAGCTTGGGCGGGATCCGCCA 74963 29 100.0 32 ............................. TCACGGCGCGTGATCGCCTCGACGACCTTGGC 74902 29 100.0 32 ............................. CCGTGCCGGCGGCGTTGGTCGCGTAGCCAGCG 74841 29 96.6 32 ............................T GGCGATCCCGTTCCTCGGGCATACGATCCGAT 74780 29 100.0 32 ............................. ATCTGAAGGACGTCCTCATATTCTGCCCGGCC 74719 29 100.0 32 ............................. CTGGTCTCCATGATGGGACTGATGAATGGGGA 74658 29 100.0 32 ............................. GACGAGAACGACGAGGACTGGCAGGTCAACGC 74597 29 96.6 32 ............................T CGCCTGGCCTGCTCCATCGAGCGACCCTAAGA 74536 29 96.6 33 ............................A GGTGACCATTCCCGCCTCGACCGCGCCGCGCAA 74474 29 100.0 32 ............................. GCTGACTGGTGGGACTACGCCATTGAGACCTA 74413 29 100.0 32 ............................. ACCAGGCCGACGACGACGCAGGCGATCGCGAC 74352 29 96.6 32 ............................C TTCTCGGCGAGGCGAGCCATGTCGATCGACTC 74291 29 96.6 32 ............................T CGCGTAGCAGTCGACGATGAAGCCCGTGAGCT 74230 29 100.0 32 ............................. CAGCGCCGACAGTCCACCTCCACGGACTCGGG 74169 29 100.0 32 ............................. GAGATGGACGCGCGCCGGCGCGGTCTCCGCGG 74108 29 96.6 32 ............................C CCGCAGCTCTGGTACGGCGGCTCCGCGCCCGA 74047 29 93.1 32 ........T...................C ACGTACCAGCCGTAGACGATCTCCATACGGAG 73986 29 100.0 32 ............................. CAGCAGAAGGAGTGGGCAGACAAGTACACCCC 73925 29 100.0 32 ............................. GTAGAGGCGGCGCACGTCCCGGTGTTCGTCAC 73864 29 100.0 32 ............................. ACGAACGCGGGCGGCGGCTGGGACAAGACGTT 73803 29 93.1 32 ..............T.............C CCGCTGAACACCACGCAGTCGGCGCCGGGCGC 73742 29 96.6 32 ............................C ACCCATCAGAGCATGCGGCGTCCCACGGCACG 73681 29 100.0 32 ............................. CATGTCGTCGGGGAGCTGAAGGAATGGGCGGA 73620 29 96.6 32 ............................T CGTAGGTCTTTTCCTGCTGCGATCTTCAGGAT 73559 29 96.6 32 ............................C GGTCGTCACCAGGGCCACGGTGACGATCGCTG 73498 29 96.6 32 ............................T CGGTGACCGGGCTGATCAACACCTATAATTTG 73437 29 100.0 32 ............................. CCCATCACCGCCGTCGCTGCGGCGTTGACGGC 73376 29 96.6 32 ............................T CAGTGGACGAGCCGGACACTGTGGCAGAGCCC 73315 29 100.0 32 ............................. CTGTACCGGCGTGTTCGCCTCGTTCATCGCGC 73254 29 96.6 32 ............................C GCGCGAGCGTAGGCGTCGTGCGCCAGCTTGCC 73193 29 100.0 32 ............................. CCTGGTGAGCACGTCGTAGCCTTCGGGCCGAC 73132 29 96.6 32 ............................C CGCAGATACCCGGCGCCGTCCCCCCAGAGCAG 73071 29 96.6 32 ............................C GACTACCTGGCCCGACTGCACCGGCTGCAGAC 73010 29 96.6 32 ..............T.............. AGGTCGACGCGGTCGGCGGGCACCCGGCGATG 72949 29 93.1 32 ..............T.........A.... TGGTGCTACAAGGCCGCGGGCGTGGACATCCC 72888 28 93.1 32 ........-.....T.............. GCCAAGATGATCAACCAGCCGTACGGCCAGGC 72828 29 93.1 32 ..............T.............C GGGTCTCCTTCGGCTGGTCGGGCACGGGGCGG 72767 29 96.6 32 ..............T.............. CTGACGTTCATCGCGCTGGACGAGTCCCCGCT 72706 29 100.0 32 ............................. CCGCCGCCGCAAGGATCCGGTCCAGGCTCTCC 72645 29 96.6 32 ............................T TCCGGTGAGCTGATCATTACTCTCTGCGTACC 72584 29 96.6 32 ............................C AGCCCGCGGGTGCGGTGGGTGGCCATGTGCTT 72523 29 100.0 32 ............................. GTGGCCTTCACCTGCTGCTCCTCATGCCTGCG 72462 29 82.8 23 .C.A.....C...G..............C TCGATGACCTCGGTCGCGTCGCA Deletion [72411] 72410 29 96.6 32 ..............G.............. GACGTCGTCCTGTCCCTGGGCGCGGTCACCCT 72349 29 89.7 0 ..........T...............C.A | ========== ====== ====== ====== ============================= ================================= ================== 46 29 97.1 32 GTCGGCCCCGCGCACGCGGGGATGGTTCG # Left flank : TCTTGGATGACGCCGACCTACGCGGCGCCAACCTGGTTGGTGCCGATCTGCGGGGGGCGAACCTCAACGGCGCCAAGCTGGAGGACGCCGTGACGGACAAGGGGACGCGGTGGCCTGATGGCTTTGATTACAGGGCTCGTGGCGTCAGGATCTGCGAGCAGCCCGTCGGGCTTTGCTGAGGGTCGTCCCCGACAAGATTGGAAACACTCAACTCGGCAACCGCGACCGTGTCCAGCAAATGCTGCAACAGCAGGTTCGCCCGCCCACCAGCCCTGCCCGCACTCTTACCCCACAGCACCGCCAGTGGGTTCCCCGCACTCGACGCCGACCACCCGATACTCACACAACGTAAGCTAGCCACACCCATCGACAAAACCACCCGCCCCACCAAACCCACCCCACGACAACACCACAGGCCCCAGACGCCGCCACCGGCCATGATCACAAACCAACCGAATGAAAACCGGCCCTCCCGCCGATAACGTCGCAGGTCAGAAAGC # Right flank : CATCTTCCGCTGCTACAGGCTAAGGACAGAGGCCAGCTCATGGGCACCTAGCCGCGGGGCGCCGTGCGACCATGTCGGCTCGTTGTCTGCTCGGCGGTTTCGAAACGGACTGGCAGGGAGCGGGATGTAGCGGCACGGGGATGGTGCTGGATGCGGACAGAGCGGTACAGTCTGATACTCAGAGCGCTGCTCTGATACGAGAGCAGGCTTTTAATCCGTAGGTTGTGGGTTCGAGTCCCACGCAACCCACCCACCTTGACCAGGGCAAACACTGTCCACGGCGGCTGAGGCAGGCGCTGCCTGGGACCGCGCTGAGGCCGTCCTGGGTCCCGGTCATTCCAGGCGCATCGGACACCCGTCTAGCCCACCCCGCAGGCGACGACTCGCCTCCTCCGCCGGGCATGGCTGACCACCGCATCGGTCCTGAACTGGGCGATGCGGACACCTATTCGATTAGCCCTTCAAAGTGTCGGCGATAGGAACCGAAGGAGCCAAGGGCT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 78879-78123 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQP01000043.1 Actinomadura chibensis NBRC 106107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78878 29 93.1 32 ...........A..........C...... CCCTACGACGACGCCACCGGCGACCGCACCGG 78817 29 93.1 31 ..............T.......C...... CGATGGGGAGTGCTGGGCCCCGCCACCAGTG 78757 29 96.6 32 ..T.......................... CTGGCCTGCGCGCGTCGCAGCCGCGCGGTCCG 78696 29 100.0 32 ............................. GTCATGAGGTGGACGCCCTCCGGGGACTTCCA 78635 29 93.1 32 ..............T..A........... TCGCGACCGCAGCACAGGTCCCAGTAGCGCCC 78574 29 96.6 32 ............................G ACCTTCGGTGGCCATGCCAGCGGTCCTGAACC 78513 29 86.2 32 .....T........TT............G GGTTACCGGAACCCTTGCCGGAAGGGTTAGGC 78452 29 86.2 32 .............CT...A.........G CCTTGGTGGAGGAGGGCGAGCAACCCAGGCAC 78391 28 93.1 32 ....-.........T.............. TCCAGCCCGTTCTCGGGGTCGGGCGTCGTCCA 78331 29 93.1 32 ..............T.............T TCCTTTAGCGCGTCGCCGGTTTTGTCGATGCC 78270 27 86.2 32 .......--.....T.............T CGATTCGCGCCCGTCCGTGCCCGTTGCGTCGA 78211 28 89.7 32 ....-.........T.............T CGAGCGAGATGACTCCTCCGCAGAAATGCCCC 78151 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 92.8 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : CCACGTCACAGCCGAACAGCAAACCACCTGGCTCCTCGAACAATCAATAAAAAAAGGCTTCGAAATCCCTCCCGCCACCACCCCCCACCCACTCCCCACTGAACAAGCCCACAACCTCCGCCTGATAGAACGTCAGCGGATCAGATTCACCAAAGGCCAAGGAGAAAAGGTCGCCCTCCACCAAGCCACATTCCAGGGCCTCCTCGAAGTGACCGATGAAGCCGCCCTACGCGCAACTCTCATCTACGGCATAGGCCGCGCCCGCTCCTACGGATGCGGCCTCCTCACCCTCGCCCGCCCCACCACAGCCCCCACACCACACACCGGGTAAACCGTCAGCCCGGCTCCTGCATCACGAACACGCTTCTTCGTTGAGAGCATTCGCCGGACCCCACCCATGCATCAATGCTTCTCTCCGCGTTCCACCTGGCCGTCCTGCGCTCATCCCACGCACACGCAGCCAGTTAGGCGGAAGGCGGCGAAGCGCATAAGCGCGGAGC # Right flank : GGCAAGAGCGTGCTCACGGACACGCTCACGTAGTCGGCCCCACGACACTTGCCGGTCGGTGACGAGAAGGCCCTGGTGCCGCCCTCCTACTACGACCCCACCTCGGCCGACACCAGTCAGCGGGCCGGCGTGGACCTGGACGCCGTCTTCCAGGTCATCGGAACTCGCCCGAAGGAGACACCGGCGATAACGGTCCTGGAGAGGACCGACCTGACCCGCGTCACGGCGCAGTCAGCCAATCTCTACCTCGCGACCTTTCAAGGGGCTCACCTGGAGTCGGCACGGTTCCAACGCGCACGCCTTTTCCAAGCGGATCTGCGGAACACCATCTCCTGCAACGCAAGTTTCTCGAATGCGGACATGCGTGAGGCTTCGATGTCGAATGCGTTCTTCGACGGCGCGGCCTTCGATGCCACCAACCTCATCAAGGCGTTCCTGCACCGGACGTCCATGAAGAGGGCTAATACTCCAGCTGTAGATCGCGATCTTGCTGGTCGGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 87822-88580 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQP01000043.1 Actinomadura chibensis NBRC 106107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87822 28 100.0 33 ............................ CCGCGTCGAGTGGGGTGTCCGCACCGCTAGCTC 87883 28 100.0 33 ............................ CGAGCCCCCAGGACCCCGGCCCCCAGCAGGATG 87944 28 96.4 33 ........T................... CGGATGGGGGAATTTCGGCGGCGGGTTCCAAGA 88005 28 100.0 33 ............................ CATGCGGCCCGCGCGCGTCTGGCGGGACATTCC 88066 28 100.0 33 ............................ GGCGGGAGCCCCCGCGTCGGCCGCGAGGAGGAC 88127 28 100.0 33 ............................ CGACAGCCCGACGGGGGTGAGGTCGGTGGCTAG 88188 28 100.0 33 ............................ GCACTCGACATGGTCCGCGAGCCCAGCGGTGCC 88249 28 100.0 33 ............................ CACGAAGGTCACGGCGGACACCGAGGAGGCGAA 88310 28 100.0 33 ............................ GAGCTAGGGCACCGCGTCCTGCCCGTCTTCCAC 88371 28 100.0 33 ............................ GCGAAGAATGGGCCCCACCCCGTGTGGGGCCCT 88432 28 96.4 33 ..................A......... CAGCGTGGCGGGCGGGAGGTCGGGCCCCCGGCC 88493 28 100.0 33 ............................ ACGGCTAGGGGGCGAGTTGTCTCGCAGCAACAG 88554 27 82.1 0 ............TG.......-...A.G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.1 33 GTCCGCCCCGCGCACGCGGGGATCGTCC # Left flank : GCCTGGCTCCACCGAACCAGAATCAAGAGGCGACCACAGAGCGGGTTCTTCTGCAACAGAACCCCACCCGAGCCGCGCCCTCACGAAGGTCTTGTCCAACCCGGCATGGGCGACCAGCACGTCGCCATCATCGGCCCCGAATTCGACCCGCCTGCCAACGGCACCACCACATGAGCACCGTCATTGTCCTCATCGCCGCACCACAAGGACTCCGCGGCCACCTCACCCGCTGGATGGTCGAAGTACACGCCGGCGTCTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGATCTACTCGCCACCCGCATCGGCGACGGACAAGCCATCCTCGTCGAACCAGCCACCAACGAACAAGGCTGGACCGTCCGCACCGCAGGCAAAGACCGCTGGAAACCCGTCGACTTCGACGGCCTCATCCTGTCTGCACGCCACCGAAACCAACCAAACCAAAACCCGCCCCCCACCAGATAAACCCCCAGGTTGACAAGT # Right flank : GCGCGGCGGAACTGCACTCCGCTGGCGATGGCGGAACCATCCCCGCGTGCGCGGGGCCGACACCGGTACGCATCTCCGTGTCGAGCGTCTGCGCGAACCATCCCCGCGTGCGCGGGGCCGACGAGAACCCGTGAACCCGGCCGGTCCGGGGACGCGAACCATCCCCGCGGGCGCGGGGCCGACGTCGTCGGCGACGTGCCAGGCGTCGGTGACCGGGAACCATCCCCGCGGGCGCGGGGCCGACCCCCTGACGCAGACAAGGCGCTTCGGCGACGTCGAACCATCCCCGCGTGCGCGGGGCCGACTTCCATAGTGTCCCAATCGTCAACGGTGCCCGGGAACCATCCCCGCGTGCGCGGGGCCGACGGCAGCAACGCGCTCGGCGGCGAGGGCATCGGCGAACCATCCCCGCGTGCGCGGGGCCGACGGGATGCTCGGCCGCGACCACGTCGCGGGCCAGGAACCATCCCCGCGTGCGCGGGGCCGACGCCGCGAGGTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCACGCGGGGATCGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //