Array 1 2192574-2192996 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001015.1 Streptomyces clavuligerus strain ATCC 27064 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2192574 29 100.0 37 ............................. CAAGGCCGACCCGATCGCGGACGAGCTTGACCGGCTG 2192640 29 100.0 36 ............................. GCGTCGGCCTCATCGAGCCAGCGTCGGGTCTCCGCC 2192705 29 100.0 36 ............................. ATGTGATTGCGTGGGACGGTGACCGTGCCGGTGCGG 2192770 29 89.7 37 ..............C..G...G....... ATGACCATGCGGACGGCGGCGACCATGGCGTCGGGGC 2192836 29 93.1 36 ..T.C........................ AGTGGCTGGTGACCCGCGTGCAGATGGCTGATCTCA 2192901 29 93.1 36 ........T................T... GGCCTGGAGAAGGAAGCAGGGACGGATCGCCTTGCC T [2192912] 2192967 29 93.1 0 .................G..A........ | C [2192978] ========== ====== ====== ====== ============================= ===================================== ================== 7 29 95.6 36 GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Left flank : ATGCCCAATTTCGATGTGATTTTGAAGCGTATGGGACCCCCTGCGCGCCGATAGGACACTGGGAACAGAAGGGACGAGTAGGGCGCAGGCATAACGACTGCACAACACCCGGTACCGGAGACGCCAAAAGCGCTGCGGGAATCGCACCTGCCTGCGATTATCGGTTCGCTTCACCGAACCTCCACATCGTGCCACGGAGGTGAAGCAACCGGGGCAAGGCGTCTGGAGCCCTATCCTTGTCCCCGGCAAGGTCACGGACCCATGGGCTCCGGGCACCATGGCCACACCATCGGCCCCCGTAGCTCAGTGGATAGAGCAGGCGCCTTCTAAGCGCTTGGCCGCAGGTTCGAGTCCTGCCGGGGGCGCACATCGCCCGATCATGTAGACCTCCCCCCGGAGGGCCGCCCGTGACACTTGGCGGGCACCTCTGGCCTCGGCGGGTGCATTACCGTCGGGTCGCTGCGGGAGTGGCTGGCCGAATGCTCCGCGTACGTCATCCC # Right flank : CATCCGTTCGGCCTGACCGGCGACTGCCCAATTCCCCCCTCCGTCAACGCGGACCCGGGATACAGCGACGGAGAGCATCAGGACCGTCTGCGCCCCGCCCCCTGTCAGGCAGGCCGGTGAGGATGATGCAGATTGCGGTGACCCCAGCGCTCACGTTCAACAGCCACGCATCAGACTTAGCCGCTTTCGCGGCAGCCCGGCCATTCACGTACACCACCAAGAGCCCCGCACCGCAAAAAATATGATTACTTCGTCGGCCAAATTTAGCCAGCGCGCATGCGCCGATGCAGCCCATTGATCTCCCCTACGGTCAGCCCCTCTCGGATGGAGTTGTAGTTCAGCTCTTTCCGAGCAAGACCGTTGGCATACGAGCGCCACGAATAATCGACCCGTTCAGCGCAGGGCCACTGGACAGGTGAGGCCGTCGGCCCTCACAGCCGACGGCCTCGCCCTCAACCCAACAGGGCTGATAACGAAAAACCTAACTGCAACTCCACCAT # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2202091-2202576 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001015.1 Streptomyces clavuligerus strain ATCC 27064 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2202091 29 100.0 36 ............................. ACCCACGCCGAGTCGGGAGCGTCCTGGCGCAGTGTG 2202156 29 96.6 35 ..................A.......... GAGATGGCCCAGTCGCCTTCTGCGGAGACGTGGAG 2202220 29 100.0 35 ............................. GTGATCCGGGCAGCGGGGTAGCCGAGAGCGCGCGC 2202284 29 100.0 35 ............................. AGGGTGAACGCCATGGGATGGCGTCGCCCGTCAAG 2202348 29 100.0 38 ............................. CGGTGGGTGAGCTGGACGTGGAGGCCGAGGGCCTGGGT 2202415 29 100.0 35 ............................. GACCCCTCCCCCGCCCCTTCCCGGGGCCCTCCCCA 2202479 29 96.6 40 ..........A.................. TCGCCGACGACGGCCAGGGGCTGGCCGAGCCAGTGCGCGC 2202548 29 75.9 0 ..............CC.CA..C..C..C. | ========== ====== ====== ====== ============================= ======================================== ================== 8 29 96.1 36 GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Left flank : GAGGAGCTGGCGACGACCGTTTACCACCGCTCCCTCAAGCGGAAGGTGAGCTACGAGGAGCTGATCCACCTGGAGGCCCTGAAGATCGTCCGCCTGTGTCTTGAGGGCCAGCCATACAAGCCGTTCCGGCCGTGGTGGTGAGGGGTTGTGTTCGTGATCCTCATCTATGACACGGCAGTGGAACGCAACCCCAGGGTGCTGAAGACCTGCCGGAAGTATCTGCACTGGACGCAGCGCAGCGTCTTCCAGGGCGAGCTGTCGGCGGCGCAGTACCGGGCGCTGATGGCCGCGCTCAGCGGTGCGATCGATCCGGGGTACGACAGCATCAGGACCTATACCGTGCGGTCTCCGGAGATGGTCGAGACGGATACGCTGGGCGTGGACCTCGGGGGGCCGGGGGACATCATCTGACCTGGGCGGATGCAGTACCGGCGGGTCGCCGCAGAAGCCGCCTCCAGCGAGGCTCGCGGATGGCCTCTGAGCTGCGATTTTACTCTCGG # Right flank : CCCCACCTGACAGAACGCCAATTCAGTCAACCTTCCCCCCACCCCAAGTCATTCTTTGCCGCTTCATAGCCTTCGCAAGGTTTTCGCTTGACCCTGTGCGGAAGGCGGGCCGCCCTCGGGCCCGTACAGATGATCCTCGCGGGTCACGCCTGACCCGTGAGGCCGGTGAGCAATGCTCATGGCCGAAGGAGCCTCGGCATGATCCGTTTTTCCAGGACGCTTTCCTCACCTTGGTCCGCCGCAGCGGTCGGCGCGGCCGTTCTGTTCGGTGTGGCGGCGCCCGCGCCCGCGGCCCACGCCGCGCCGCTCGCGTGTGGGCAGACCGTCACGGTCAGCGTCGTGCTCAGCGCGAATCTGCTCAACTGTCCCGGTGACGGTCTGATCGTCGGGGGCAACGGCATCACCATCGATCTCAACGGGCGTACCGTCGACGGCGTCGGGCTTGGGGTCGGTATCCGGAACAACGGGTTCGACAACGTCACGGTCACCAACAGCGGCAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 204971-204820 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001019.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pSCL4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204970 29 96.6 32 ............................T ACATCGGGGACTGCTTCGGATCGGACGCGTAG 204909 29 100.0 32 ............................. GGGTGAGCCACCACAGGAGGACGGATGCCCGA 204848 29 86.2 0 .....................G..ACT.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 ATCCGCCCCGCCCGCGCGGGGATCGTCCG # Left flank : GGGCAGCCCTCACCGCCCGCGAAAACCAGAACACTGACCTCGACCTCGTCGAATACCCCACCGTCGACACCGCGCCCGAGGACGCCTGGGACCGGGCGGCCGTGCGCGCCGACGCCGAGACCGACCCTGGCCTCGTCCTCGCCTACGCCCGCCACGCGGGCCACGACCAGGCGGTCGCTCTCTACGGAACCCGAGCCGCTCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGGCATCCCCGGCCAGGCGGGGTTCCACTGAACCGGCAGCGGACCCGGCCGACTCCACCGCAGCCCGAGCCGGGGCAAGTCGCCTTCCGGACACCGGAATCGACCCAGACAACCCCACGACGACCACACCGCCCGATACCGTTGAACACCCAGCCCCCGCCCAGCCCAGCCCCGGGCCAACAGATCACCGGACCAACGGAGCCCCAGCCGAATGCAGGTAAACGAAAACAGCATGATCACGTGACAACGCCCCAGGTCACGAAGT # Right flank : GCAGCGGCGATCCGGCTCTCGTCCGGAGCCATGCACGAGTCGCCAGACATGATGCGGCCATCACTCTCTGCGGAACCACCGCCGAACGCATCACCCAGGTTGCTCTCGAGGACGACCTCGCGTCTTCCCCGGGCGGGGTTTCACTGAGCGGGAGTGGCTCGGTCCCGGGGTCTGTTCCGGCACCGGCCTGGCGGGCCGGGGCTGCGGAAGTAGCACGTTCGTGTACGGGAGTTGACGGAACGGACCGTACGACTGGGCGCCGGGGGTAGAGTACCGGTGCGCTTCGTGGCGCCTCCCCTCAACGATTCGCGTCCGGGCCCCCGCCCTCGGGGCCGGCCCGAACCCAAAAGAAGGTCACCAGCCGGGAACCACTGGTGACTGTTCTGAGGGGAGGCGCCCATGGGGCGTCGCGGAAAGCCCAAACCGACCTTGCGGCAGCGCATCGAAGACCTACTGGTCCGAGCAGCGCGGAAGCTGGGGAGGTGGCTCAAGGGCTGACC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCCCGCGCGGGGATCGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 205880-205666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001019.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pSCL4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 205879 29 89.7 32 .C.......................C..A CCTCAGCAGGCATGAGCACGAGGTGTTCATCA 205818 29 100.0 34 ............................. TGGCGCCCCCCGGCGACGGTAAAGACGCTGCGGT 205755 29 89.7 32 C..T.................A....... ATCACCGTGGACGGAGCCCCGTTCCCGTGGCT 205694 29 69.0 0 G..T.................TG.AGCTC | ========== ====== ====== ====== ============================= ================================== ================== 4 29 87.1 33 ATCCGCCCCGCCCGCGCGGGGGTCGTTCG # Left flank : GTGCCGAACGTGGATTTCCAGGCCGCCCGAGCAGCATTCACCGCCCGCAGGAACCAGACTGCCGGACCGACCCTGGTCGAGTACCCCACCGTCGACACCGCGCCCGAGGACGTCTGGGACCGGGCGGCCGTACGCGCCGACGCCGAGGCCGACCCGGGCCTCGTCCTCGCCTACGCCCGCCATGCGGGCCACGACCAGGCGGTCGCTCTCTACGGAACCACCGCCACCCGCATCCTCCACGCCGTCCTCGAAGACCACCGCGCGGGCTTCCCCGGCCGGGCACCGCCCCGCTGAACCGGCAGCGGGCCCGGCCGACTCCACCGCAGCCCGAGCCGGGGCAAGTCGCCTTCCGGACACCGGAATCGACCCAGACAACCCCACGACGACCACACCGCCCGATACCGTTGAACCTCAGCCCAGCCCCGGACCAACGGAACACCAGCCGAATGCAGGTAAACGAAAACAGCAAGATCACCTGACAACACCCCAGGTCACGAAGT # Right flank : TGGCTCCAGCGTGCCGGTGACCACATCAGCACGGCTGACCGCAGGACGGCGGCGCCCCGACCAGGCCCACCGGGTCACCGCCAGCACTCCTCCGCCACGACCGCCAGACACAGCAGCACCTCGAACAGCACGGACCCAACCCCGGACAGGCCGAGCGTGAGGCGACCGTGCCGAACCCCGAGTTCCAGGCCGCACGGGCAGCCCTCACCGCCCGCGAAAACCAGAACACTGACCTCGACCTCGTCGAATACCCCACCGTCGACACCGCGCCCGAGGACGCCTGGGACCGGGCGGCCGTGCGCGCCGACGCCGAGACCGACCCTGGCCTCGTCCTCGCCTACGCCCGCCACGCGGGCCACGACCAGGCGGTCGCTCTCTACGGAACCCGAGCCGCTCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGGCATCCCCGGCCAGGCGGGGTTCCACTGAACCGGCAGCGGACCCGGCCGACTCCACCGCAGCCCGAGC # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCCCGCGCGGGGGTCGTTCG # Alternate repeat : TCTGCCCCGCCCGCGCGGGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [1,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 211705-211915 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001019.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pSCL4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 211705 28 92.9 33 ....C........A.............. GTCCTCGCGCCGAAGGCGGGGAAGTGGGACGCC 211766 28 100.0 33 ............................ GAGGGTGCGCAGGCGCTGGGCGGCTGCGCGGAG 211827 28 100.0 33 ............................ AAAGAAGGGCCCCTCATCTCCGCCCCCTCTCGG 211888 28 96.4 0 ......T..................... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GAACGACCCCCGCGCGGGCGGGGCGGAT # Left flank : CCGGTCGACGTCCCCGTTCCGCGTGAGGTACGACGCCGTGTTCTGCGGCGTGGTCCGGGCGTGCAGGGCATGGACGGCCCCGTCCCACGAGTATCTAGCGGCATCGCCGACCCAGGCGAGTACCGTGTCCTCCCCCTCCTCCAGCACGGCCAGGACGGCGGCCCCGGTCGGCTGCCCCGGGTCTGCGACCTGGCGCCCGGCGGCCGTCAGACCCGCGCGGGCGCCGTACAGGGCGCCGTATCGCACGGCGGTCCGCGCGCACAGCAGCCCGACCGTCGGCGCACCGGGCTCGTGCCCGGAGATATCGACAACACACAACCACCCCTCCGGCCGCCGGCCAGAAGACGGAGCGGCTGCCGGCACTGTTCCGTGGGTTGGTGCCCTGACGGCTGACCGCGACGACGATGACGGCCGTGGTGGTCATGGTCTCCCCTGGCGCCGGTGTGACCGCCGACCGTAGCCAGGGAGGTGTATGCACTCGACCCACAGTGTCATCGCGA # Right flank : TACTTCGTGACCTGGGGTGTTGTCACGTGATCATGCTGTTTTCATTTACCTGCATCTGGGGCTGGGGCTCCGTTGGTCCGCGGCGGGGGCTGGGTGTTCAACGGTATCGGGCGGTGTGGTGTCGTGGGGTTGTCTGGGTCGGTTCTGGTGTCCGGAAGGCGGCTTGCCCCGGCTCGACTCGATCGGGGTGTGGTGGAGTCGGCCGGGTCCGCTGCCGGTTCAGTGGAACCCCGCCTGGTGGGGGATGTCTGCCCGGTGGTCTTCGAGGGCGGCGTGGAGGATGCGGGTGGCGGTGGTTCCGCAGAGGGCGACGGCCTGGTCGTGCCCGGCGAGCTGCGCGCAGCTGCGGACGAGTGCCGGATCGGCGTGGGCGTCGGCGCGTACGGCCGCCCGGTCCCACAGGTCCTCGGGCGCTTCCTCGACAGTCGGGTGCTCGACAAGATCGAGTCCGGCAGTCTGGCTTTTCGCGGGCGGTGAATGTTGCTCGGGCGGCCTGGAAC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACGACCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 4 212932-212596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001019.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pSCL4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212931 29 100.0 32 ............................. CGGTAGTGGCAGAGTTCCGCGCCACCTTCGAC 212870 29 96.6 32 ............................G AGGGCGGGAGGGTCGCGGTGCCGCGCGCGCCG 212809 29 79.3 32 .T.............A.....G...CT.T GAGGTCGACGTCCTCCGGGAGCTGGGCGCCGT 212748 29 86.2 32 .T...................G....T.G CCAAGCCTCGTCACCCGCGCCGCCGCGTGGCT 212687 29 86.2 33 .T......T.....T......G....... CGGGGTCGCCATGTCGGTCTGGACCTTCGCCCT 212625 29 75.9 0 GT.T.................C..CG.T. | G [212616] ========== ====== ====== ====== ============================= ================================= ================== 6 29 87.4 32 ACCCGCCCCGCCCGCGCGGGGATCGTCCC # Left flank : CCTGACCAGGGCCAGGACACTCACCGCGGCCTGCCCACGGACCGCTTGTTCACCTCACGGACCTTCGCCGACAGCTTCTTCCGCTGCTCGTCGGTCACCCCGATCGCCATCGCGGTCACCGCACAGCCTCACGGCCGGTGGAGGTGAGGGTGAGCAGGGGCTGGCAGACGTAGCCGGGAGCCATCCCCGCCACCGTCCGCCGCGCCTTCCCGCCGTCCGCCGCCGCGCGCCGGTCACCGTCGGCGAGCAGATGCCGCACCAGGCGGTGAAGCTGCTGGACGGGTTCGTCATGAGGTTCGAGCCACTCCCGCTCCTCCTCGTCCCGGACATCATCGACGACACCAGCCTCGACACCCCACAACGACCGCACCACCCGATACCGTTGAACACCCACCCCAGCCCAGCCCCGGGCCAACAGATCACCGGACCAACGGAGCCCCAGCCGAATGCAGGTAAACGAAAACAGCAAGATCACGTGACAACACCCCAGGTCACGAAGT # Right flank : TGGGTCCAGCGGGTCGGTGACCACATCAAAGCCACCGACCGCGGACGGCGGTGTCCGGATCATCCGCACCGGGAGTCAATGCCGCGGCACTCCTCCGCCACGGCCGCCAGGCGCAGCACCTCAAGGGCCACGGACCCGACCCCGGACAGGCCGAGCGTGAGGCGACGGTGCCGAACCCCGAGTTCCAGGCCGCCCGAGCAACATTCACCGCCCGCGAAAAGCCAGACTGCCGGACTCGATCTTGTCGAGCACCCGACTGTCGAGGAAGCGCCCGAGGACCTGTGGGACCGGGCGGCCGTACGCGCCGACGCCCACGCCGATCCGGCACTCGTCCGCAGCTGCGCGCAGCTCGCCGGGCACGACCAGGCCGTCGCCCTCTGCGGAACCACCGCCACCCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGACATCCCCCACCAGGCGGGGTTCCACTGAACCGGCAGCGGACCCGGCCGACTCCACCACACCCCGAT # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCCCCGCCCGCGCGGGGATCGTCCC # Alternate repeat : CCGCCCCGCCCGCGCGGGGATCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [1,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 217011-216771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001019.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pSCL4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================ ================== 217010 27 89.3 60 A....-...............A...... TGGCTGGTGGAGTCCCCGTCGACGACGTGGACCGAGCTACCGCCGCGCCCCACCCAAAAA A,T,G [217002,217006,217008] 216920 28 100.0 33 ............................ CTCCGGGGGCGGAGGGAGATGGAGCGGATCCGG 216859 28 100.0 33 ............................ CTGGAGCAGGCCGCCCGTACCGACGTCGGCGTC 216798 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================ ================== 4 28 97.3 42 GGACGACCCCCGCGCGGGCGGGGCGGAT # Left flank : GGCTCGGGCTGCGGTGGAGTCGGCCGGGTCCGCTGCCGGTTCAGTGGAACCCCGCCTGGCCGGGGATGCCCGCGCGGTGGTCTTCGAGGGCGGCGTGGAGGATGCGAGCGGCTCGGGTTCCGTAGAGAGCGACCGCCTGGTCGTGGCCCGCGTGGCGGGCGTAGGCGAGGACGAGGCCAGGGTCGGTCTCGGCGTCGGCGCGCACGGCCGCCCGGTCCCAGGCGTCCTCGGGCGCGGTGTCGACGGTGGGGTATTCGACGAGGTCGAGGTCAGTGTTCTGGTTTTCGCGGGCGGTGAGGGCTGCCCGTGCGGCCTGGAACTCGGGGTTCGGCACGGTCGCCTCACGCTCGGCCTGTCCGGGGTTGGGTCCGTGCTGTTCGAGGTGCTGCTGTGTCTGGCGGTCGTGGCGGAGGAGTGCTGGCGGTGACCCGGTGGGCCTGGTCGGGGCGCCGCCGTCCTGCGGTCAGCCGTGCTGATGTGGTCACCGGCACGCTGGAGCC # Right flank : ACTTCGTGACCTGGGGTGTTGTCACGTGATCATGCTGTTTTCATTTACCTGCATCCGGCTGGGGCTCCGTCGGTCCGGTGCTCTGTTGGCCCGGGGCTGGGGTGGGGTTCAACGGTATCGGGCGGTGTGGTTGTTGTGGGGTGTCTGGTCGCCTTCCGGTGTCTGGAAGGCGACTTGCCCCGGCTCGGGGTGTGATGGAGTCGGCTGGGTCCGCTGTTGGTCCAGTGGGGCGGTGTCTGGGTGGGGATGCCTGCGTGGTGGTCTTCGAGGATGGCGTCGAGGACATGGTTTGTGGTGGTTCCGTAGAGGGCGACCGCTTGGTCGTGGCCTGCGTGGCGGGCGTAGGCGCGGACGAGTGCCGGGTCGGCCTCGGCATCGGCGCGTACGGTCGCCCGGTCCCACAGGTCCTCGGGCGCTCCTCGGCCATGGGGTTTTCGACGAGGGTGGGTCCGGCAGTCTGGTTCCCGCGGGCGGTGAATGCTGCTCGGGCGGCCTGGAAC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.59, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGACCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 6 221613-221464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001019.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pSCL4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 221612 27 92.6 34 ....A..............A....... TCACGAGAATCGCCGCGATGGTGCCGGCCTGCAG 221551 27 96.3 34 ........................A.. CGGGGCGGCGGTCCTTGTAGGTGACGCCCTTGCC 221490 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================== ================== 3 27 96.3 34 GGACGACCCCCGCGCGGGCGGGGCGGA # Left flank : CCGGCTTCACCGAGATCGGCCGGATGCTGCGTGAGCCATGCGACGGTGAGCGCTTTCGCCGGGGGCATCTGCTGATGCGCGCAGGGAAGTGACTCAGGTTGTCGCGTGCCGCCATCGACGGCACGCGACAACCTGGACCGCCTCAGCCGCGTTGGTTCAGAGCCCTGGTCAGGTCCCGGTTGGCCTCCCTCGCGGCATCGAGATCGGATCGGGCCTCCTCCAACGCGGAGGTCAGTTCGACGCTGCGCTGCTCCAGCCTGCTGATCTTCCGTTGGAGCTCGTCAATGTCCGCTGGAGCACCTCACCCGCGCCGCCTACAGCACCTGGCCACGATCCGGCGCCGCCCCCTGACCCCGGCGGCCCGGCCCCGCCCACACCGCCCTGACGGCCGCGGTCCAAGCCGCGCTGCCCGCCCCGACCCCGGGCGAGACCGCAACCGCGTACGCCACCCGCTACCGCAAGCGCCCCTCCACCTCCTGACCCACCCACACCAACACAAC # Right flank : TCCGTTCCAGCCATTCCGAAATCACCTGGTTGGTTTCTTCTGGCATTTCCTCCTGGATCCAGTGACCGCAGTCCAGGCCGACCACTTCCACGTTGGGCACGAACTCTGCCAGTCTTTCGAATCTCGGGATCGCGAAGTCCTGGTCGCCGTAGATCATGAGGGCGGGCTGCTTGATGATCGGGTCCGCGTCCGCCAGCTGGTGCCAGTTGCGGTCGAGGTTCCTGTACCAGTTGATGCCGCCCGTGAATCCAGACGTCTCGAACGCGGAGACGTAGACGGCCAGGTCGCTGTCGCTCATGATGGGCTCACCGAGTGGTGTTTCCGCCTCGGCGAGGTTGATAAATGCCATGCCCGGCTCAGGGGGTGCGGGGGGCACGTTCTTCCGGTAAAGGTTGCGGAGGAACTGAGAGGTGTTGGCATCAAATGCGGCGTCCGCGACGCCCGGCTGCCGGTTGAAGTGGACGAAGTAGAAGTCGCCGCCGAGGAAGGTTTCCATGACC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGACCCCCGCGCGGGCGGGGCGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 7 227957-227746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001019.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pSCL4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 227956 28 85.7 33 ..............T.T.......G..T GTCGTGCTCGGGCTCGCTCACCGGGTCTCCTTG 227895 28 100.0 33 ............................ CGAACCCCGGTGTCTCGACGGTTGCCTGGAGCA 227834 28 100.0 33 ............................ ATCCCCAGACAGATCCGCTCGGACTCGCCCAGC 227773 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GAGCGACCCCCGCGCGGGCGGGGCAGAC # Left flank : GGATATCGAGGAGGCGGTCGCTCGGGACGATGAGGCGGCCGGGGTGTTCCGGCGGGGACGGACCCGACCGCGGCGCTCTCGGCACGGCCAGCGGGTCGGCGGGCCAGAACCAGCCCCAGTCCGGGTCCGGGGACCGGCGGCCGACCGTCGGCGGGTTTGTGCCGGTCTTCAACCCGGGCCCGGCCGAGCGCCGTACTCCCCCGCCGGTCGAGGCCGGTGTCGTCGACGACGTCCAGGACGAGGAGGAGCGGGACTGGCTCGAACCCCACGACGACCCCGCCCAGCAGTTCCACCGTCTCGTCCGGCACCTGGCCGCCGACGGTGACCAGCGCGCGGCGGCGGCCGGCCGGAAGGCCCGGCGGACGCTGGCGGAGATGGCCCCCGGCCATGTCCTCCAGCCCCTCCTCACCCCCACCCCCACCTCCACCAGTCGTGGGGGTGCCCGATGACCGCGGCCCGCCCGCCGCCCGCCGTAGCTCTTTGAACGGCACGGGACACGG # Right flank : ACTTCGTGACCTGCGGCGTTGTCAGGTGATCATGCTGTTTTCGTTTACCTGCATTCGCGGCTGGTCCTTGTGTGGTGCGGTCTGGGTAGGTGCACGGTATCTGCCGGAGTGACCGTCGCGGGGGGTGTCTCTATGTCCTTCGTCAAGGATGTGGTGCCGGGTGTATAGGTGTTTGTGGTGGTTATGCGGCGAGGGCGGCGGTGGGGGTTCGGGACTCGTAGAAGGTTCCGTCGCGGAGCATGGCGAACAGGACGCTGACGCGCTGGCGGGCGAGGCGGAGGAGTGCCTGTGTGGTGCTCCTGCTTCTGGTGCGGGCCGGGTGGAGTGGTTTCGTGGTGAGTGTGAGCCGTACGCGGCCTGGAAGGCCCGTACGCCCGTACTGCTGCAGGTCTGCCGGTCGTGTCCTGCGCGGGCGGCGTGCTGCGGGCTCGCGCTGCGGGACCTGGAGGGGATGGACCTGAACCGGGGTGAGGACGACATGGTCCGCGGCGGTCTGCTGG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCGACCCCCGCGCGGGCGGGGCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //