Array 1 2639866-2640810 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028519.1 Microvirgula aerodenitrificans strain BE2.4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2639866 29 100.0 32 ............................. CAGCTTGCCAAAGGTGTCCTCCTGGTCAGCAG 2639927 29 100.0 32 ............................. ACCGAGGCGCTGGACAGCGTTGCCGCCGGCGC 2639988 29 100.0 32 ............................. GCTGGGTCATTTTCCTGACCACCCAGAGCGAC 2640049 29 100.0 32 ............................. CGCTGCGCTTCGTTGATATGCGCACCCTCAAA 2640110 29 100.0 32 ............................. ACGTGTGCGTTCTTGCCACAGCCGCTGACCAA 2640171 29 100.0 32 ............................. TCGATCACGGTTGACCGGTTCAACGTGGCGAC 2640232 29 100.0 32 ............................. GAGGCCAAGGAGAGGTAAGGCAGGCAAGGAGG 2640293 29 100.0 33 ............................. GACGTGATGGCCTACATCCTGATCGTCTACCTG 2640355 29 100.0 32 ............................. TTCCTTGGAGTGCCGCCACACGAACTATGGCC 2640416 29 100.0 32 ............................. ACGTTCCGCAATGGGATGCTGCCCACGGTCTA 2640477 29 100.0 32 ............................. AATCTTGTAGGCGGGGTCGCTTTCCACCAGCG 2640538 29 100.0 32 ............................. CGCCATTTTAAGCCGGCTTCCCCTCTCGTGAC 2640599 29 100.0 32 ............................. CCGGCATCGACTATGGCGCGTCGATGGCCGAG 2640660 29 100.0 32 ............................. TTGTCTGTGAAGGAAAAAGCCGCCCGCACCAG 2640721 29 100.0 32 ............................. ATTTACCGCAAGGACCGCACCCGCCCGGTGGC 2640782 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCGTACGCGGGGATGAACCG # Left flank : TCCAGATCGAGACCGCCGGTCATGACACCCCGGCCGATACGGCCGAGGAGACCCCGGCCGCCGAAGCCCGCCGCCGCGCCGACGTGGCCCAGCCCGCCGCTGCCGGCGACGCTGGCCAAAACGGTCTGTCGCAGGTCGAGACGCGCCACTAAGCGGAAATCCGTCAACCTTCTGCATGCAGGGGGTTGACGGAATCAGCAAGCTTCCGTAGAATCTCTTTTCTCGATTCCCCGATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAGCCCAGGTCGGGGAGCCAGAATTCAAACGCCGTGAACGCATGTTCACGGCGTTTTCATTTGTGGATTGCCGGGAGAAACAGGCCGGATGGCTGCCGGTGTGCGAGGCTGCTATCGTACTGGCTGCGGTGTGCATGAGCCCCCTTGCCGGGGGCTGAAAATCGGTAGATTTTTGCTGTGGCAAATAATCGTTTTTAATCAGGTGGTTATTTTTAGA # Right flank : GCTTGCGGGCCTTGCCTGCATCAGCGTCAATGGGGGGTCTTCACCCAGGCGAAGAACGGCCGAACGGACCCCCGCCGGGCCTGCCTGCGATCACGCCAGCCGCTTGACCAGCAGCAGCCCGCAGCCAAATGCCTGGGCGTGGCCGAGGCTGGCGTTCTTTCCCGGGAGCGGCTGGCCCAGCATTGCCTGGGTCAGACGCTCCGGGTCCTGCACGCGCGCCATGCCCTGATAGTCGACGCTGGAGAAGCGCAGTTCCCGGCCCTTGCTGCGCAGAACGTGCTGGCAATAGCCATCGGCCTGGATCTGGTCCGGGTCGATCTGCAGGCCCCAGCTGGCAGCGCGCTTGTCCAGCCAGGCCAGCGCAGCCTGCCGGATTGCCTGCTGCAGTGACTCACCCTGCAGCCCGGCCTGTCTGGCGAGGGTCTTGGCATGCATGAGGACGTCGTGACGCTTGCCGCGCTGGTCGGGGGCGCTGGCGATGGCCACTGTCGGATTGGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2648648-2649592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028519.1 Microvirgula aerodenitrificans strain BE2.4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2648648 29 100.0 32 ............................. CCGTCACCGTAAAACAGCTTTGCGCTGATCAG 2648709 29 100.0 32 ............................. AACGGAACGCCACGTGACGTGCCCTTGACGAT 2648770 29 100.0 32 ............................. TACTGCTGCCCGAGCTGCCAGAACCGTTGTGG 2648831 29 100.0 33 ............................. GATATCAGTCTGCTTAAGCCACTGCCAGTCGTG 2648893 29 100.0 32 ............................. CTAATGTGTGCTCGAAACATAGGGACTCCTAT 2648954 29 100.0 32 ............................. GGGCTGCTGGTGCTGGATCGCTGGTTAATCCA 2649015 29 100.0 32 ............................. AGATGCCGATTCAGCCGATGGAATACAGCATG 2649076 29 100.0 32 ............................. AATTGACTCCGAGCCGCTACGAGTTGCTGATT 2649137 29 100.0 32 ............................. TGCCCGAACACCTGGACGCACATCGAGACCAT 2649198 29 100.0 32 ............................. CGCCCCCAAATTGAACGCGCCGGCCAGGAACT 2649259 29 100.0 32 ............................. CCGTAGCCGCCGGAGACGCGCGCTTCCGCGCC 2649320 29 100.0 32 ............................. TCCGCCGACTCTGTGCCGCCGGCTGACATGCC 2649381 29 100.0 32 ............................. ATTCCAGTCGATGTCGTCCCATCTCAGCGCCA 2649442 29 100.0 32 ............................. ATTCCAGTCGATGTCGTCCCATCTCAGCGCCA 2649503 29 100.0 32 ............................. GTCGATGGCCAGACCTTCGGGACTGCGACCAC 2649564 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGGACGCGGGGATGAACCG # Left flank : ATATCGTGCAGGGCGGCAAAGAAAACCAGATGCTCCGCCAGTGCCCGGGGTTGCCAGTTCCAGCGGGCGGCGAGCACTGCCAGCCATTCGGTTTGCTGTTCCAGCAGACAGTGCATGACCGCTGCCACATCCAGCGAGTGCAGGGGCAACAGGTGCCAGGCGGCACTGTCGGCCGTGGCCGGGGAGGCCTTGCCCCAATAGCGCCAGTAGGATGCGGTAGTCTTCAAGACGATCCTGTTCGTACGGCATGGAAGTGAGCGAACAGACTATTCCGTTTGATTAATTTTTTCAAATCATCGACATGGCCATCATGATGCTGGTGATGTGACGTGGTCGAACGGCATGACCTTGTGTAGGGTATTGGTGCCTGTGAACGCTGGCGGTGGGGCCTGAAATACCGGTCATGCTGCGAGACGGAAAGCGCTGCTGCAAGCGTGCTGAAAATCGGTAGATTTTTGAGGTGTTAAATTGTCGTTTTTAATCAGTTGGTTATTTTTAGA # Right flank : GCTGAGTTTGCCGAGCACCCGTCGCGCCGCCTGGTGTTCCCCGCGTGAGCGGGATGGTGTCCCATTGGACGCTCAGGTTTTGCGCACCATGCTTTTCGCATGACATACTCATTCCGTCCTGATCAATGCGCGGGAAGGCCATATGGGCGGCGGAGTCATCCAGTCATCAGGTGAAGCTTGGCATTTTGATACGCTGCCGCCGGTGTGCCGGCAGCCATCGGCAGCAGGTGGCGTGCCGAGTCTCCATATATGCGGCATTGGCCGAGGGATGACCCGATGAGCCAGCCTCTCCCCAAACTCAAGCCGATTCCGGTCAGGGAACGGCTGTCGGTGCTGTTTGTCGAGCGCTGTCAGCTGGACGTGCTGGATGGTGCATTTGTCGCCGTCGATACGACCGGGATACGGACGCATATTCCGATCGGCGGTGTTGCCTGTCTGCTGCTGGAGCCCGGGGTTCGCGTGTCGCATGCGGCCTGCAAGCTGGCTGCCGAAGTGGGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2651160-2652713 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028519.1 Microvirgula aerodenitrificans strain BE2.4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2651160 29 100.0 32 ............................. CCAGCCCGAAGGCCCGCGCGGCACATTTCGCC 2651221 29 100.0 32 ............................. CAAGCCGACCGAAACGTTCACGCTGGCCGAAG 2651282 29 100.0 33 ............................. CAGTTTATCGAAGCCACGCCGGGCAACCCGTTC 2651344 29 100.0 32 ............................. TTCGTCCGCCGCGGAACCGACCTCGACAGCTA 2651405 29 100.0 32 ............................. AAAATGACCCAGGCGGCGAGAATGGTCTTGCG 2651466 29 100.0 32 ............................. CCGGACGCCGCCTGTCGACTCGATGCATACGA 2651527 29 100.0 32 ............................. TCGGCAGTGGTACCTGGCAGCTTGTCGCCGAG 2651588 29 100.0 32 ............................. CCTCCCAATGGATTTGCCAGCCGGCCCGGGCC 2651649 29 100.0 32 ............................. TGCCTAGCCTGAATCTTCGCAGAATAAGTGGC 2651710 29 100.0 32 ............................. GGGAGGGGGCGTCAAAAGTCTACCGATCCCGA 2651771 29 100.0 32 ............................. AATTTGCACAGCCACTCAAGCTCGGCCAGGTT 2651832 29 100.0 33 ............................. AACAGTGGGACCAGCTGCACCGCATGCGCGATG 2651894 29 96.6 32 ...........A................. CTGGCCAGCATCTTGACCTTTGCCTCGGCCTG 2651955 29 96.6 32 ...........A................. TTCGTCCGCCGCGGGACCGACCTCGACAGCTA 2652016 29 96.6 32 ...........A................. CGCAGCGGCCACGTTCGGCGGTTCCATGGCCC 2652077 29 96.6 32 ...........A................. CAACCACATATTGGCGTATTTTTTACTTCGGC 2652138 29 100.0 32 ............................. CACTGTTCAGTGCCGCCAGGTATTCCGGCAGG 2652199 29 100.0 32 ............................. GTCTGGCCATCGACCTTGCCACCGAACGCATG 2652260 29 100.0 32 ............................. ATTACTGGAACAAAACGCTTGTCCTCAATCTT 2652321 29 100.0 32 ............................. ACTTCGCTGCACTTGGCAAAGACCCGGTTAAC 2652382 29 96.6 32 ............................T CGCCATCCAGCAATGTAATGTGCCGCTCTATC 2652443 29 100.0 32 ............................. CTGGTGCAGTCGATGAGCATTTCCGCCGACGG 2652504 29 100.0 32 ............................. GGCAACTTTGCCGGTACCGACCAGGAGCGCGA 2652565 29 100.0 32 ............................. ATGTGATTGCGCTGCAGGCCTATCTGACGGCC 2652626 29 96.6 31 ............................A GATATGCCGGCATTTTGGTCATGACCAAATC 2652686 28 72.4 0 .........T.C.G....C...-...AAT | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.2 32 GTGTTCCCCGCGGACGCGGGGATGAACCG # Left flank : GAGCGGATCATCCCCGATATCGAAGAACTGCTGGCGGCGGGCGGGCTGAGCGTGCCGGTCGTGGACGGGGTGGTCGAGGTGGCGATTCCGGAAGAGAAGGGGCTTGGCGATGCTGGTCATCGTACTTGAGAATGCCCCGCCCAGACTGCGCGGCCGCATGGCCATCTGGCTGCTGGAGGTACGGGCCGGCGTCTACGTTGGCACGTACAATCGCAAGGTGCGTGAATACCTGTGGCAGCAGGTGGAAGAAGGGCTGGAGGACGGCAATGCGGTAATGGCCTGGCAAGCCGCCAATGAGGCCGGTTTTGAGTTTGTCACGCTTGGTCGCAATCGACGGATGCCGGTCGAATTCGACGGTGCCAGACTGGTGTCGTTTCATCCTCCGGATGCCGGTGACGTCACAGCCTAGGGTGGTTTGACGCTGGTCTTGGGCAAGGCAAAAAGTTGGTAGATTTTCCGGGTGCAAAATAGTCTTTTGTAATCAATTGACTATTTTTAGA # Right flank : TACCCACTTCCCATGACTGCCGACCCGGTACGAAAGCGGCCAGAACAAACGGGCAACCCCGTCCATTCCCTCCCGGGAATGCACCGGATTGCCCGTTCTGGCTTGACGCGACCCTCTACCGTCGTGCCAGCCCCCTGACCACGGCCACCAGCTTGTCGACCTCTTCGCAGGTGTTGTAGAACGCCAGCGACGGCCGCACCGTGGCTTCGACGCCGAAGCGGCGCAGGATCGGCTGTGCGCAATGGTGGCCGGAGCGCACGGCGATGCCTTCGCGGTTCAGCGCGTCGCCGACTTCCTCCGGTTTGTAGCCCTGCAGGACGAAGGATGCGACGCTGGTCTTGTGCTGCGCGGTGCCGATCAGGCGCAGGCCGGGGATGGCGCGCAGGCCGTGGGTCGCGTATTCGAGCAGCGCGTGCTCGTAGGCGGCAATATTGTCCAGGCCCAGCTGCTCGACGTAGTCGATGGCGGCGCCAAGGCCGACGGCGTCGGCGATGTTGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //