Array 1 303-1121 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PZXY01000030.1 Staphylococcus aureus strain CM28 PROKKA_contig000030, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	====================================	======================================	==================
       303	    36	 100.0	    34	....................................	TTTTTTCCACCCTTTCAGATCATCTATGATCTTG    	
       373	    36	 100.0	    34	....................................	TAGAATGTTATTATCTAAGTGGTCGATGTATTCC    	
       443	    36	 100.0	    37	....................................	TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 	
       516	    36	 100.0	    35	....................................	CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA   	
       587	    36	 100.0	    38	....................................	TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC	
       661	    36	 100.0	    35	....................................	ATAAACCCGTTCAATTCGTTATCTTTAAATTCTTG   	
       732	    36	 100.0	    36	....................................	ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA  	
       804	    36	 100.0	    36	....................................	ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA  	
       876	    36	 100.0	    35	....................................	AAGTTAACGGCATTACCTAATAAAAATATTTTAGG   	
       947	    36	  97.2	    33	...................................C	TCATCTTTCATGTCACTGATTAATTCATTTGTA     	
      1016	    36	  97.2	    35	...................................C	GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT   	
      1087	    35	  91.7	     0	............T.................-...G.	|                                     	
==========	======	======	======	====================================	======================================	==================
        12	    36	  98.8	    35	GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	                                      	       

# Left flank :   GCTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCTG
# Right flank :  TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GATCGATAACTACCCCGAATAACAGGGGACGAGAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.80,-7.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.27   Confidence: MEDIUM] 

# Array family : NA
//