Array 1 48360-48162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000004.1 Tychonema sp. LEGE 07203 NODE_20_length_84901_cov_5.661016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ==================================== ================== 48359 42 100.0 36 .......................................... AGTTTGCCTGTTGTTCTGCTAGTTTTGCCTCGGCTA 48281 42 97.6 36 .......................................C.. GACTTGCCTGTTGTTCTGATAAAACTGCCTTAGCCG 48203 42 97.6 0 ......T................................... | ========== ====== ====== ====== ========================================== ==================================== ================== 3 42 98.4 36 CAGCAACATCTTGGGTTCGATTGCCGTTGAGCAATTTTTGCA # Left flank : GCTTCTAGCAGCGCCAAAGCTTGCTGTTTTTGCTCGACAGCGGCGCGGGCTTGGGCGATTTCTTCGGGGCGCGCGCCCGATCGCACCAAGGCCAAAGCTTGCCGTTTTTGCTCCACTGCAGCCCGTCCTGCAGCGATATCTTCGGGGCGCGCGCCCGATCGCGCTAGGGCCACAGCTTGCCGTTTCTGCTCCACTGCAGCCCTCGCTGCTGCGATTTCTTGGGGGCGAGCACCCGCTTTCAGCAAAGCTACAGCTTGTTCGGCTTGTTTGACTTGCGTGCCGGCTCGATCGCGCGCGGTGCGGGAATTGTTGACAATTTGCAAAGCAATGGCTCCAGCATTATAGAGTTCTTGATTTCTCTGAAACTCTTCCTCTGCCTGATTTTCAGCGTATTCAGCATCTTTGAGTTTGGCACTTGCTTGGGCGATATCTTCAGGCCGATTTCCCCTCAAGCAATTTTTGTAAATTTGCCTGTTGTTCTGCTAGTTTTGCCTCGGCGA # Right flank : AGTTTGCTTCGGCGCTTGCGAGTTGTCCGCGATTTTGGGTAAGTTGCCCTTGCAGGTTGGAGTCGTCCATGTAGGCGAGAATCTGCCCTTTTTCAACGCTATCTCCTTCGCTGACAAGCAAACTTTTGAGCATTCCTGAAGTTTTGGGGCTGACGTTGACGGAACGTTCGGGGACAATTGTGCCGTTTGCCGAAATTGTAATCGGCAGGTTGAGCCTTTCTACAGCAACGGTTTTTTCCTTGCGCCCGGTTTCGCTACGCTGTTGGACTGCGAATTGGCTGTAAGCTGTGTAGCCTACTCCTGCAATCAATCCGGTGGCGAGGAGCCCGCCCAGCCAGGGAGTCAGCTCTTTTTTAATGTGAAAGTTTTTTACTAAGTACATATTCTAAAAAAGTACATATAGATTAGACCTGATGGGCCTGTATGTGATTTAGACCGATCGCCCACACGAAAGGTTCAATGGCAGCGTACTGATGTTTTTGTGGCTTTTAATGCTTGCG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCAACATCTTGGGTTCGATTGCCGTTGAGCAATTTTTGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 52793-52951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000001.1 Tychonema sp. LEGE 07203 NODE_10_length_171783_cov_12.340425, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 52793 27 96.3 39 .....................A..... CTTGATTTGATTGTGGGTGAGGGCGAGGTAATTCAGTTT 52859 27 100.0 39 ........................... GCTGATTTGATTGTTGTCGAGGGAGAGCCAATCCAGGTG 52925 27 96.3 0 ......A.................... | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 97.5 40 AGTCAAGGATGCTAGCGGTTTGATGTC # Left flank : AAGTGCGATCGCACTTGCCACCAGCTAACAGAATACCGACCGCTCTTTTTGGTCAAATAATTTCAGGTTTTAGATTCAGATTTTAGATTCTTGACAGTGCAGTTGCTGCTTTAGGGTTTGGCATAACAAATGAATCCCTTGTGTCAAGCGTTTCATTTACCATAACAGTCATGCCAAACAGTTTCAAGCGCGTGACACACGGCTTTTGGTGTCCTCAGCCGGACGGGCAGGCGGCTATTTTTCCGATGGCCGATTTTTTAATTGTGACGAAGAAGAAGACAATGGCGGTCAGTCGTAAAAATCCCGCTGGGAGCTTTAGGCGAGGATAGGGTAATTTCTCTCTCACTCCAAAACCTTGTTCTAGTTGGGGATACTCTAATTTTCTGAACTCTCAAGTTTTAAGAGCTAGGTTCTTGTTACCAATTACAGATAGACTCTGGCTTGAGAGGACAAGTCTTGGGTGCGCTCGAATTTCTGCTGAGGTAAAGAGCGGTCAGTTT # Right flank : CACGGATTTGATTTTTGTCGAGCTTTAGTTCCGTAAGACTCGAAAGTTGTCGATCGGCCGCCTCGCACTCAGTAGTTTCCGCTTTCTCCAACAACACCTCAACAGTATGTTTAGTTTCAGGACTCAAAGAAGCCTTTTCGCGACACCAATCAGCAAATGTCCGTCCACTATTGCCCCGTTGTTTCTGCACGACCCATGAGGAAGGTGCATTTCCACTATTTTGCAACTGACTCGATACCACCAACATGAAAACAAGGGCTAATGAAATCATAGGGAATAACCTCTGTAGATTTTTATATATTTCCCCATCTAGGACTTGAAAATGCAGAGGGTACGTCAGGAAATGGATTTTCCCCTCCTAGAGCTTTTTAGAGATGTTTGAGGCTGTAAATCAGGAAATACGGATTGTACCTTAAACATGGGCACCGCTGCCTAAATTACACCCTAGTTACTAAAGATATTGACGTTGCTGATTTACGGTATGAAAAGCTAAATATGCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCAAGGATGCTAGCGGTTTGATGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1645-2159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000244.1 Tychonema sp. LEGE 07203 NODE_539_length_5916_cov_5.256176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1645 36 100.0 38 .................................... AATCGTATTGGCGGTATTCCCGTCGTAACCACCCTTGA 1719 36 100.0 45 .................................... GTGCTGAATGACGACGGGCTGCGCTACGAAGACGAGTTCGTAAAG 1800 36 100.0 46 .................................... GTACTCCTTCTTAGGATTAATACCTTTATGCACTTCTGGTACTAGA 1882 36 100.0 47 .................................... TTGATACGTCCTATGATTGTTGAGGTAGTGCTGATATTGTCACCGAA 1965 36 97.2 41 ....T............................... GCCCTTAGTTTCACGGTTATTGAGTAGCCAGTACTTCTCGC 2042 36 97.2 46 ..............................A..... CTGGGCTACTTGTACGGCGACTCCGTTACCAATACATGAAGATGCA 2124 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 7 36 99.2 44 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : AGAAATTGGGTTGAAGTTTTCTATCGGGAAGCCAAGGGCTGGTTGGGGTTAAATGAATATCAAGTCAGAGATGAAATCAGCCTGAAAAGACATTTCATTATGGTGTTTTGTGCCTACACTTTCATTCTCTGGCATACCTTAACAGGAGGATTAAGGCGTAGATGGGCAAACAAATCTTTAAACACTTTTACGCTATGCACTCGAAGCATTTCGGACATCCATATCTTTTAGGGAAAGTGAAATGGTTGAACCAAAATTGGGACGTATTGTCCGCTTATAAAGCCAGTTTAGGCTTTGTTTGGGCTTAAAATTTGTTTAAGTCCCGCTAATTGAATGGAAACCGTAGACGAACCACCCTGTATGGGGAACCCATTTGTCCGGCTAAGCTGTTGTGCAAATAAACATTGTATATTTTGATGACGATCAAAAATCGTCAAATCCTCTCCCCCTCTCCCCCTCAATCGCCATACACAATCTATAGGGGCAACAGCTTAGTGGCT # Right flank : CTTAGCAATTATGAATTCTGTTCTTTCTAATCCAATGCAATTTTGTCGGTGGGTGGGGGCGGGTTTTAGAGATGGTTGGTTTCTTACATGAATTGTTGGTAAAACCCGCCACTACGGGCGATTGTGGGGCTGGTTTATCATATTGTTGGTTTTTTACATGAATTGTTGGTGAAACCCGCCCACACAGCCGATTGTAGGGGCGGGTTTTACAAATGATACTTGATGAATACCAACAAGTTAATAAACCCGTCCCACACAGCCGATTGTCTAGATTAATCTAATGTGCGATCGCCTTTGATAATCTAAGTTTGGATTTGTCGGTGGGTGGGGGGCGGGTTTTGGAGATGGTTGGTTTTTCACATGAATTAGGATTTGTCCGTCACCCGATTTGAGATTGTCGCATTGAAGATTTACTTGCAGCATTCAATCCGGCAGCTTTAACAAAAGTCAAAAATTTTTGAGTCTCCGCTCCAGGAGTCCGGGGTTGTATCCGTTTTTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3739-7412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000030.1 Tychonema sp. LEGE 07203 NODE_54_length_48890_cov_5.525070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 3739 36 100.0 45 .................................... TTCACAATTGTAAAAGCTGGAAAAATAAAACAGTACAAACTTAGA 3820 36 100.0 36 .................................... TCAATCCACACGTAGTCTCCCAATGTTGCAAGTTGT 3892 36 100.0 43 .................................... TTTTTTTTAGGCGGTAGAGGGGAGGGGGTGCCTGGCTTTTCAC 3971 36 100.0 39 .................................... TGGTGGTGCCTGGGACAATGCCAAAAAGATGTTTGAAGA 4046 36 100.0 39 .................................... GTTATTAAGATACAGTTTGAAAAGAAAAACATGATCAAG 4121 36 100.0 35 .................................... ATCGTGGTGTGATTCGGATTCATGCCCCATATCCC 4192 36 100.0 34 .................................... AAGCTCATCAAAATCCCTTGTCTAAGCAGTCTCA 4262 36 100.0 37 .................................... TGAAGTGTAACTTTTCGATGTCCGCCCGGACTTTCTC 4335 36 100.0 39 .................................... AATAAATGCCAATTCTGGGAAAAGTTGTAAGGTTAGCTT 4410 36 100.0 37 .................................... TGGTCTGAGCAAGCTTTGCTTGGGCTTATCCCAGAGC 4483 36 100.0 40 .................................... TCGCCTGTCTTCATGTAGGCATGATAGGCATTATCATCTG 4559 36 100.0 40 .................................... TAAAAAAGATCCGGCTGATGCAATGCGAGGGGCTGCTGCT 4635 36 100.0 37 .................................... GTTAAAAAAGTCATGATTTTACCCTCAAATACTTTAG 4708 36 100.0 42 .................................... TATTATTAATTTTGTAAATCAATTACAAAGAGAATGTTATGA 4786 36 100.0 40 .................................... AACTTTGTAAACGGTATAACATTGATTCTTAAATATCAAA 4862 36 100.0 41 .................................... TTTAGCTCCTTATAGTAGTGTAAATTACCACCGTCAAACCA 4939 36 100.0 36 .................................... CTTCCACAAAATCATCTCTGTTCATTGGAAGAGGAG 5011 36 100.0 37 .................................... TTCAGTAATATCTGCTTGAGGAGAATGCTCGTTGCTA 5084 36 100.0 39 .................................... GGCCAAAACCAAAGCTTTCATTTCCCGATCACCTCCCAA 5159 36 100.0 37 .................................... CAGTACCAAACAACATAGCTAGGCATGGTTTCATTTT 5232 36 100.0 46 .................................... GATATGGTAAAAAAATGGGTAGTCTTAAAAGTATTTCCTTTGCAGA 5314 36 100.0 39 .................................... TATATTTCATGTTTTCACTGTTAGTAATGCTAATTCTAA 5389 36 100.0 32 .................................... ATCTGTTTTCAATACTTGACAGATTCGGTAAA 5457 36 100.0 41 .................................... TAAAATAAAAAGTTGTTGACAAAATTTGCAAACCTCTCTAT 5534 36 100.0 37 .................................... TTAGCCATGGTCGTTTTCCTCAAATGAATGAAATGAA 5607 36 100.0 37 .................................... TCTGACTTTATTGGCAGCAATTATGAGGATGCGCTAA 5680 36 100.0 39 .................................... TTAGAGGCAATAAAAACTAGTGATATCGATGCACTTGAC 5755 36 100.0 36 .................................... TTGTTAAAGTTAACATTCGTATTGCGTTGGCGCTGA 5827 36 100.0 37 .................................... GTATCAATTTAGCAATCTCAGAGTATGCTAGACCAAA 5900 36 100.0 34 .................................... ACGATTGCGAAAACAGCCAAAGAAGCCATTACAG 5970 36 100.0 38 .................................... ACAAAACCTCGCTTTCCAATGTGGATTTTTAAAGAACT 6044 36 100.0 40 .................................... AAAAGACAGTATCTTAGTACCAGGAGAATTAGCACCAAGA 6120 36 100.0 39 .................................... GAAGTAAAGTATCTGCAATCGCGTGATTGACCGGATGGG 6195 36 100.0 40 .................................... ACTCTTCCGTTTAGTCTAAACTCCCAACGCTGGGGTGCTG 6271 36 100.0 41 .................................... ACCGCAGATGCAGCAAGCCCTATATTAATCAATCTATCTAT 6348 36 100.0 40 .................................... TAGGCAAAAACAATGCTAAACACAACCCAGTACCAACTCA 6424 36 100.0 36 .................................... TTTTTTCTTAATGTCGGTAACAAATTTCACCAAGTC 6496 36 100.0 41 .................................... TATCTTTTATAATTTTTTGGTCTGGCTCTTTATGAACATTA 6573 36 100.0 37 .................................... TAGGATTCTCGCCACCAGTGGTAGTGCTTGATAGCTA 6646 36 100.0 37 .................................... TTAAAATCAGCGAATAGCTCAGAAAGTATACATTTAG 6719 36 100.0 38 .................................... AGGGCTTTTGCTCAAAAACATGGTTATACTGCCTTCGG 6793 36 100.0 42 .................................... ATTAGTGGGTGAACCAACAGAGTTATCATCGCTGCGAACAGA 6871 36 100.0 37 .................................... ACCGCCTGCACGAATGTCTGCCCATGTACTACCTGCA 6944 36 100.0 34 .................................... GATAAGACAGCGTGTGGTGGGCATATAGTAACAG 7014 36 100.0 41 .................................... AAAGCTCTAACCAGGCGATATCGCTCAATTTGATGAGAGAG 7091 36 100.0 39 .................................... ATCAGGGGAGTTAAAACGGTTAGGCTTAGAGTGAACAGG 7166 36 100.0 34 .................................... GGCAAACTTAAAATTGAGCTAAAAAAGCCGTTGC 7236 36 100.0 33 .................................... AAAAACTTGTCCGAGCTATCAATTTTGTAAAGG 7305 36 97.2 36 .........A.......................... AAATAAAGTACGGCTGGTTTGGGCTTTGTTAGTAAA 7377 36 97.2 0 .........A.......................... | ========== ====== ====== ====== ==================================== ============================================== ================== 50 36 99.9 38 GCCGCAATTCACTTTTCCCCGCAAGGGGATTGAAAC # Left flank : CCTGCGGGGACGGGTCAATTTGGATGAAGATAACATCCGTTTTTATACTTTGTCAACGCGGGCGATCGGGCAGGTAGAAACTTGGGGTTCTGGCCCGCCGGTGACTCAACCGCCGACTTCGGTCATTGTTTAAAGTATTTTTTTGACACTTGACAGCCAGGGAAATCTAGGTTAATATTTCTCCATTGCTAGATTCGGCTTGTCAATCCACACAAGCAAAAGTAAACTTGTAGTGTTAATTACTACCCGAATCAACAGCACCAGTACCTAGAAAATTAAATACGTTTAAGTAGTGTTTTAGCGGTTCAATCATTTAGCTATGCGACCGCCTCGCTAAATGGCTGAAACACTGATTCTCTAGTAGAGGCGGTCGCTCTCTTGTGCAGTAAGGGTTTCAGTAATTTTAGATCGCCAATTTTCGGCTCTAAGTGCGCTCAGCATCAGAGGCGGTCGCAAACGGCTTCTGGAGCCTTTACTGGGCACGGCTTCCACAACCTGGG # Right flank : CTAAAATTGCGAACTTTGGCAGCAAAAATTTCATCCCGCACGCTGCACTCTTGTCGATCGCCCGTGGTATAATTGCAGATTGTGACATCGTACAAAAAAACATAAAATCAATTCATGCCACTTACACAACAGCGCAAACTAGAAATCATGGGCGAATACCAAACCCATGAAACCGACACCGGTTCGGCCGACTTACAAGTCGCGATGCTGAGCGATCGCATCAGCAAACTCAGCGCCCACCTGAAAATCAACCAAAAAGATTTCGCATCCAGGCGCGGTTTAATGATGATGATCAGCCGCCGCAAACGCCTTCTAGCCTACATCCAAAAGCAAAATGTCGATCGCTACAAAGCATTGATTGCCCGTCTAGGCATTCGCGGCTAAACACCAAAGCGAAAATTTGCGACAATATTCAAGAACCTTGGGCAAACACCAAGATTTATTGAATAAATGTTCGAGATTTCAGGTTAAAGATAAAATATGTCCTCCGAACCACCCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTCACTTTTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : NA // Array 1 4488-9434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000052.1 Tychonema sp. LEGE 07203 NODE_77_length_36447_cov_5.822247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 4488 36 100.0 35 .................................... AAGTCAGCAAAGGTTTTTACCGCTCACCCAGAGAG 4559 36 100.0 39 .................................... TCTGGTTTTTAACTCAAAGTGAATCGGGCGTAAAATTAA 4634 36 100.0 35 .................................... TTTCCCCTACCTAATGTCTGGCTCGGCACTTCTAT 4705 36 100.0 43 .................................... ACTAAAATAATTAGATTTATGGCTCCAATATCAGATTATCTAA 4784 36 100.0 45 .................................... TTTAAAAATTGTATCTGCTAAAAAGGGTTACACTCCTGCTTTAGT 4865 36 100.0 35 .................................... CTGAGTGGAGATATAGCTTTGATTTAGCAGTAGCA 4936 36 100.0 34 .................................... TTAAAAAGCTTAGGTATAAATGCTTATAGCAAAT 5006 36 100.0 37 .................................... TTAATAATCAAGAGTTGACGCTTGAAAGTCTTGCGGT 5079 36 100.0 31 .................................... TCGAACACCACCACATTTACAACAACGTTTA 5146 36 100.0 38 .................................... AAAAGAAGTAGATGAATTAATGAAACCTTTGAGAGAAG 5220 36 100.0 43 .................................... GATGGGTGGTTTCGATGTATTAGAGCTTCCACTACTTTATATG 5299 36 100.0 35 .................................... TTAAATGGGACGAGTATTGCCCACTGTTTGATAAT 5370 36 100.0 34 .................................... TCAATGGTAGCAGGTTATACTGAAGCTGATACTT 5440 36 100.0 47 .................................... CCCCACAGCTCTAGTAAGTCGGACGGGGGTCTCCAAAGCTGATACTT 5523 36 100.0 46 .................................... GCAAGTCGGCGTTAACGGAGTATTTGCTATCTACTGGAATATCGAC 5605 36 100.0 40 .................................... TCTACTTTATGGTCGTAAAAGACAAGATAACCGTTTTAGT 5681 36 100.0 37 .................................... GTCGATGCGGTCGAACGCAGAAAACTGCTTGAATTTA 5754 36 100.0 34 .................................... CAAGAATGGGAATAGGAAGCCCATACGTGTAGGG 5824 36 100.0 44 .................................... TGTGATGCGTGGTTGAAGCGTCGAAACTCCACCTCGATCATACA 5904 36 100.0 40 .................................... GTAGTTTCCTATCAACCAGACCAACCTTTCAGCGCTTGGC 5980 36 100.0 43 .................................... GCGGGGTACAAGGTGTAAAGCTTATCCCAGCAAACACTGTCTT 6059 36 100.0 38 .................................... TTAAGAGATGGTATCAGGGGCGGTAGTGTCGAGGCTTG 6133 36 100.0 32 .................................... TCTTCGGATACTTGGGATGATCTATTCAAGAT 6201 36 100.0 46 .................................... TGAATGGTGTTTCTCAAGTACGGGAAAGGTGTTCCAAGCTAGAGAA 6283 36 100.0 44 .................................... AGGATAACTCGTACAAGAATAATTACACTGAGGAAGCTCTTAAA 6363 36 100.0 36 .................................... AGTAATGGATGAAAAACTACGAACTGTATGGTTATT 6435 36 100.0 40 .................................... TTAATCGACTTAAATCAATTTATGATTGCCAAAAAATCAA 6511 36 100.0 37 .................................... CCTACGATTATAAAAGTTATTTTAGACCGGGATTTGG 6584 36 100.0 39 .................................... GGAAAATTTGATGTGATAAATAGTCGGGCAAACGGTGCA 6659 36 100.0 34 .................................... GTCATTGGCAGCATACAGGCCCCCAACGGCGCGG 6729 36 100.0 34 .................................... CGAGATTGAAATCGAAGTAGACGGCGTTAAAGGC 6799 36 100.0 47 .................................... CCTGTTCCTCACCGTTGGCTGTGGTGCGGACTAAGCCTTGTGCTAAC 6882 36 100.0 39 .................................... GCCGGAGAAAAACACTCGCGCATCGCAGACATCCTCGAA 6957 36 100.0 42 .................................... AACTCAAAAATTATGCAACTGTTAACAGCTAAATTCGCTCAA 7035 36 100.0 38 .................................... ACCTCAGCCATATTTGCCTCTAATATTGCCTGTTTCTT 7109 36 100.0 36 .................................... GCCATCTAAAAATACAAGCACCTGCCGGAACTGAAA 7181 36 100.0 34 .................................... TGATTTCATCGGAATTGCAAAACTCCTAAACTAT 7251 36 100.0 34 .................................... AAATCTTTAGTAAGAAGTCGATGTTTTTGGTACG 7321 36 100.0 39 .................................... ACGACAAAGAAAAGCAATAAATAAATGGAGGACATAATA 7396 36 100.0 34 .................................... AGTTCCTTTTGATATTTACTGACAACTTGACCGA 7466 36 100.0 40 .................................... TCGATTACGACTCAGGCTGGTCTTTATCCGACGTTCAAGT 7542 36 100.0 36 .................................... TCTGGAACCACCTCTGTGACCGCTTCCGCCTCAACT 7614 36 100.0 49 .................................... GCTGATTTGTATGCCGTTCGGTTTGACACCCAAAGATTTGGGACACGAA 7699 36 100.0 41 .................................... TAGGACTGACAAATAAATTCTTCCCGTCATCCGTAATTTCG 7776 36 100.0 38 .................................... CCTATATCGGTTAATAGATGGTGTCGGAATCCAATCAA 7850 36 100.0 41 .................................... TTTATTTTTTTCTTCTTGTGAACTACTTTAAAATACTCCTC 7927 36 100.0 36 .................................... AATTCATATTTGAAAACGGGGGAGTGCTAGATAATT 7999 36 100.0 36 .................................... TGTAACTTCTATTAGGAAAGGAGCTAATTATCTTAA 8071 36 97.2 38 ...................................T GACGGTCGCAAGTTCCTTATTGACCCAAACAGTCTATC 8145 36 100.0 48 .................................... GAGTGGGGAGGCCGCTATCGCCCGTACTACCGCGAAATGCTCGAAGAC 8229 36 100.0 35 .................................... TAAAATATCTAACTCCTCACAGTCAGCCCAAGCCA 8300 36 100.0 42 .................................... AGCTATTAAGAATCAGTTTATTGTTCCTGATAACTCATTGAG 8378 36 100.0 41 .................................... AGTAATACTAAAGATAGAATCGTCATTCCCCGCAATCAAAG 8455 36 100.0 31 .................................... AGAAGAAGAAGAAGAAGAAGCAAGTCAACAC 8522 36 100.0 36 .................................... TGAAAATGGTTGAATTTCAAAAAGACCTCGAAAAAC 8594 36 100.0 35 .................................... ATGTCTACTCAGCTTAAAGAATTAGTTACTTTAGA 8665 36 100.0 36 .................................... ATGACTGTCTAGTCTCTACTGGAACAGAAGTATCAT 8737 36 100.0 35 .................................... TTACTGAAACTGGAAACACGGTTACTCCTACTCTA 8808 36 100.0 35 .................................... AATCCCCACATTTTGAAGCACTTAGCTGCTATGCA 8879 36 100.0 34 .................................... TCTTAAATTAAACAGGCAACAAGTAGCTAATAAA 8949 36 100.0 36 .................................... TCTTTGTGGTTCACGTCAATGGCTTGCTGAAATATT 9021 36 100.0 39 .................................... GAGAGTGAATACTTCCGGGGGCTATATTCGTGGAGCAAA 9096 36 100.0 40 .................................... CGGCCATACACGGACGGATAAGTGTGGCCGTTCTTGTGCG 9172 36 100.0 40 .................................... AATTAGGATTTCTATCGCTTGCCATTATCGACAACAAAGA 9248 36 100.0 44 .................................... AAATCTCGCCAAACACACTCAATCAACAGCTTGCAGTAACTCAA 9328 36 100.0 35 .................................... CGCTTTTTAAAATTCTAATATTAAAGCTTAAACAA 9399 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 67 36 100.0 38 GTTTCCATTCAATTAGTTTCCCCAGCGAGTGGGGAG # Left flank : ACTGCGATAGCTGTGGTCAAATAAAATAAAATAACCTCAAGGGGTGACAACAAGGCTACAAGGCACTCTCGATCGGGGATAGAGCGTGAAGTCCTTGTTTAAAATTGAGTCGTTTGTGGGGTTTAAGATTCATCAGTACCGCGGCTAAATCCGACCAATCATGGAAAGATTGGCCCCAATCAGGAGCGTGCAATCCCATCCAAAAAGTGCTATAACGCTCTGTTAAACGTCCGGTTTCAGTAGGACGACAAATATACTCAACAACAGTTCGATGTTGTAAAGAAGCACCCTGTAAAGTGGCTAGAGTATAAGCAATAGAAATGAGTAAAACCAGCGCCCTTAAGCGACGCTCGTTAACTTTTGTATTTTCGAGATTATAGCCTCCAGTTTTTAAATCGCGAAACATTGTTTCGATACCCCATCGAGCGGCATAGATAGAAAGAGTTCGGGGTAAACTGTTTAAGCTCGTCAAAATATACCAAGGGTTTTCGGAAAAGCAA # Right flank : GTCCTCTATCATACACCCAAGACAGCGCAAGGTGTCTAGACGCCATTTGCGAGGCTCAGATAAATTTTGTCAAACTCACACCTGTGTTCGCTCAGAATAATCCCTGAAACCCTTACCCAGTGTGCCTGCGAGGCTCGCGACGAAAAAAGGTCGTTTGAGCTAATTTACCGCCAGCCTCGCAGCATTAGCTAAATAATCACCGAACCAGGTGCTTTTGCGATCGGCGCTCCCACTCCCAAAACCTCCACCTGTCCCAAAGTATGGCGCGACACCGGATAAAACCGGATGCTATCCTCTTCGAGATTTACCTTTTGCTCAATTCGCGATCGCAATTCATCAAACTTAGCTCGACTGAGCACGCACTCAAAAGCGCTATACTGCACCCAAGTCCCGTAACCTTCCAACAAATCATGCACTTTAGAGCGCCGTTTGTTGTCAGGAATATCGTAAATCACCACATAGAAAAGCAAGGTTTAACGAATTTGATAAGGTTTGTAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTTTCCCCAGCGAGTGGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 20-5861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000047.1 Tychonema sp. LEGE 07203 NODE_72_length_39684_cov_5.455141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 20 37 100.0 34 ..................................... CATTGAGTATTTACCCTCATTAGTAGAGTAAGAA 91 37 100.0 38 ..................................... TTAAGTGTAAATGTACAAACACATCATACCTATGTTTA 166 37 100.0 45 ..................................... ATCTGTTACCCTAATATCCTTATATATACGGAGTACCGTTCCTGC 248 37 100.0 34 ..................................... CATTGAGTATTTACCCTCATTAGTAGAGTAAGAA 319 37 100.0 36 ..................................... CGGAGGGGTATTAGTATCAGGACAAGTAGTAGAAAT 392 37 100.0 37 ..................................... TTTAGAATGCTGGTGCAACAGCGTCGCCCGTAAACCC 466 37 100.0 33 ..................................... TGGACAGTTGCGAAATGAACTTGCAGTGCATTC 536 37 100.0 33 ..................................... CAGACAATCAGCAAGAGTTTCTGCTAGTTCAGA 606 37 100.0 34 ..................................... CTCACGGGTGATCGACACCCATGTAGATCCTCGC 677 37 100.0 31 ..................................... GCATTGATGGGAGACAAGACTAGCGATGCAA 745 37 100.0 33 ..................................... CTTGCCGGACTAGACAACACGCTGCTAGAGAAG 815 37 100.0 36 ..................................... GCTTAACTGGCAAGTCTAACGCCACAATTCGCCAGC 888 37 100.0 33 ..................................... GGATTTTCAACCATACGGCCGGCACTGTAATAG 958 37 100.0 39 ..................................... GATTTCCCTTAAGTGATTCGATCGTCCCTAAAATCTGAC 1034 37 100.0 35 ..................................... TTGGGTAATTCCAGTTCAGAAGAAAATTAACATCA 1106 37 100.0 33 ..................................... CGATCGACAACGCAACGAACTCCGTGAAGCTTA 1176 37 100.0 36 ..................................... CCTCAATGAAATTCTTGAAACAATTGCGAAAACTTT 1249 37 100.0 40 ..................................... GCGCGAATCACACGGCCCAGGACTTCTGTTAACCTCAAAA 1326 37 100.0 33 ..................................... GGAAGACAAAGCCTGCGCTGAAAGTGCAGAAAT 1396 37 100.0 34 ..................................... GGAGGCGGGGGTGCAGACACTATGAAAAACGGCA 1467 37 100.0 41 ..................................... GCGGTCGTGGGGATTGTGGCACTGTAAGGAATTGCCGCGCC 1545 37 100.0 33 ..................................... TCATTATTAATAACCATGAAAAAGAGCAGGGAT 1615 37 100.0 37 ..................................... GCCTAATTCTATCAATGAAATTATCGTGAAATCTCCC 1689 37 100.0 37 ..................................... CGGTATAGTTTCCTGCCTTCGTCCCATGATGTTTTTA 1763 37 100.0 34 ..................................... GTGTAGATTAGGTGCGATTTCATTAATCAAAGCT 1834 37 100.0 33 ..................................... TAATCGCGCTAAACAACTAGGTAATTTCAACTT 1904 37 100.0 33 ..................................... GACAAGGAGGTAGCCAAATCAGTTACATTAGTT 1974 37 100.0 31 ..................................... AAAAACCGAAACACTGATGCTGATGAATTGG 2042 37 100.0 33 ..................................... AAAAACAAGCTCCGGGCAGGCGATCGAACTCCG 2112 37 100.0 36 ..................................... GGCACAAACTGACGCAGCGGTCATCAGCCCGCGCCG 2185 37 100.0 42 ..................................... GCTAGATTTTTCAGTCAGTGGCTGGCTCAAGATTTCTGTACA 2264 37 100.0 36 ..................................... GGAAAGATTGGGGGCTTCAAATTTTGGATGAGTAAC 2337 37 100.0 34 ..................................... TCCGATCGCCGCTTTGATATCGTCCGCAGTTATT 2408 37 100.0 37 ..................................... TCAGGTAGGGTAGTGCGCGAACAGTTTCTATATAATT 2482 37 100.0 38 ..................................... CTGACGGCGACGATTGCTCATTGCTTCCCCGATCGCTT 2557 37 100.0 35 ..................................... TGAGCCGACAGCGCAGCCCAGAAACTTGCCCCAGG 2629 37 100.0 33 ..................................... ATTCGGTATGAAGATTTGCTGGCAGATAAAATC 2699 37 100.0 45 ..................................... TGCTGTACCCGCTCAAGAAATGGTGGGGGCGGAAGCTGCCGCAAT 2781 37 100.0 38 ..................................... GAGGTAACTATCCCCAACCAAATTGAAATTAGTGCAAC 2856 37 100.0 43 ..................................... TTTTCTAGATGAACACAAGCGAAGCCCATCAGATGTGAGGCAA 2936 37 100.0 41 ..................................... ACCTCAACCAGAGGAGAGCGATCGCGTAGACCAAGCGCAAT 3014 37 100.0 36 ..................................... ATTCCTCTGCTAGGTGATTTTGTCATTCCAGACAAC 3087 37 100.0 36 ..................................... AGTATGTTACTTAGTATAGCCAAATTTATCAAGGCA 3160 37 100.0 35 ..................................... TAAAAATCTTTTCATTACCAACAAATATGGCACGC 3232 37 100.0 34 ..................................... AAAAAAGCGTAATCACGCTGATTCAAATCAACTT 3303 37 100.0 35 ..................................... CCAAAAAGAAGTAACTAACATGAAATTGACATTTA 3375 37 100.0 34 ..................................... CCAAATTACTAGAAGCACAAGCTTATCTAAAAAA 3446 37 100.0 31 ..................................... AAAAATTACCCTATTTTTGACTTCAACATTA 3514 37 100.0 36 ..................................... TAATCTCTTGCCTTGTAAGGGTTGCAAGCTTTTAAC 3587 37 100.0 37 ..................................... CAGTATCCCAATAAAAAGGGAGAGGCCAAGCGGCTGC 3661 37 100.0 32 ..................................... GGCTCGTATTAGTCGCGAAAACCAGGCGAAAG 3730 37 100.0 37 ..................................... GAGTCGATGTCGTTAAGCCAGGTTTTAAAGCCAGCTT 3804 37 100.0 33 ..................................... CAACTTTTTGTTTATGAATATACAGGAACAATA 3874 37 100.0 33 ..................................... TGCCATTTTGGGGGTCCGATTTTCAGGTCGCCT 3944 37 100.0 33 ..................................... TCCACATCTTTATAAGAAGGTGGAACCACTAGA 4014 37 100.0 36 ..................................... TAAACCCTTGACCTTTTATCCACTGACCCGCATAAG 4087 37 100.0 37 ..................................... GCACTGTATAGGTTTCAGAAGAATAGTCAGCAATTGA 4161 37 100.0 33 ..................................... ATAGGAAATCAGCCAAGGGTAAGTGGGCAACAG 4231 37 100.0 34 ..................................... GCCCATCAAAGAGGATTTCAGCCTTAAAATACTG 4302 37 100.0 42 ..................................... CCAAAGCTACGTAATGCTGGAGCGGGTCGCGAGTTGCTACAA 4381 37 100.0 32 ..................................... GGATTTCTAATTCTGGACGAAATAGTAACAGG 4450 37 100.0 35 ..................................... TTTCATAAGCTGCATACCAAGCAGCATTTTGAATG 4522 37 100.0 33 ..................................... GGACAAAAGAAGATTTCTGACAACTGAGGAAAT 4592 37 100.0 33 ..................................... TAATACTTTCTTTAATGCAGCAGGAGGTCAAGC 4662 37 100.0 33 ..................................... AAAAAATATTTGAAGGGGGAAAAGAATTATTAA 4732 37 100.0 33 ..................................... TCGCTTTTTCCACAAAATAATTCGACAGAACCT 4802 37 100.0 33 ..................................... TAAGCGCGATTAAACTACCCTGAAATTCGTAAA 4872 37 100.0 33 ..................................... ACAATGCCTTGTGGGAGCAACTTGATGGAAAAT 4942 37 100.0 33 ..................................... CTATTATTCAACAAAACATAGACAACATACTCG 5012 37 100.0 45 ..................................... CAATATTTACACTTGGCATGGAATGCAGGATTACAAGCCGCAATA 5094 37 100.0 37 ..................................... GACTGAGGTGGCAATTCAAGCTGCTATGAAACGACGA 5168 37 100.0 33 ..................................... AGCGTGGACTTTTGGTATTGCTGCTGAAAAGGA 5238 37 100.0 33 ..................................... ACTAGCGGGGTATCTGATGCTCAAGCAAAACTT 5308 37 100.0 41 ..................................... GGAGGGAAAGTTGGAGCGAGGTATATTTGGGGGGTGGGAAG 5386 37 100.0 35 ..................................... TTGCTTTTTAACATTAACTCAGAGAAATCGACCTT 5458 37 100.0 38 ..................................... AGGAGATTGGAGTCGATTTGAAACACATCTCCAATCCT 5533 37 100.0 37 ..................................... TCCCAAATACCAAATTCACGAGTAGCTAATTTATCAA 5607 37 100.0 34 ..................................... AGCGATTTGCTTTCGCTAACAATCTCTTCCAAAA 5678 37 100.0 33 ..................................... CAGATAGGCTTCTCTTTGTACTCGCTCATCTCA 5748 37 100.0 40 ..................................... CAGGATGAGGTATACAGGCATATAGGCGGGGAGGTAGAAG 5825 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 81 37 100.0 36 GCCGCAATAAACTCCACTCCCTTCTAGGGATTGAAAC # Left flank : TACGGAGTACCGTTCCTGCG # Right flank : CTGCCAAACTATAAAATTATTGGCTCAAAAATAGATTGATCCTCACCCTGTTTATCCCCTCCAATAACCTCAAACAATCGATCGACTCCACAGCGCCAAGAAAAATGTTCAGCCACAAAACCAGGCCCAGCAACCCTAGCTTTGGCAGCTATTCCAGGCTGTTCGATCGCCCCGAGCATCAAATCAGTCAAATGTTCCCACTCAGGAGCTAACATAAATAAGGTTTCCCCATCAACAACCACAGCCGTAAATTTACTCTCTATCCGCAGCGCAAAATCCGATCGCGTAAAATCATCCGTAGGGCCGCCCTCCGTGCAGATTACCAGCAAACCGCAAGCCGCAGCCTCCAACACCGGCAGATTAAAACCTTCCGCCAAATAGGGAGAAACATAAACATCCGCAGCTTGGTACAACTCAGCTATTTCAGCAAAAGATAGCTGCGTCCCAGTATAAATCAACCTCGGTAAAACCCTCGCTCTTTCGGCATCGTCGAGCACCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATAAACTCCACTCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 6939-6700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000077.1 Tychonema sp. LEGE 07203 NODE_103_length_30166_cov_5.608875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =============================== ================== 6938 23 87.0 31 ....T.....GT........... CGAAGGCGAAGCAGCCAATGTCGCCCGCCTA 6884 23 100.0 31 ....................... CGAAGCCTTCCAAGCAAACGTAGCCAAATTT 6830 23 100.0 31 ....................... CGAAGCCGAAGAAGCCAATCTGGCTAAATTT 6776 23 95.7 31 .....A................. TCAAGTGCAGCAAGCCAAACTGGCGAGGCTG 6722 23 73.9 0 .........T...GCG.C....T | ========== ====== ====== ====== ======================= =============================== ================== 5 23 91.3 31 GAAGCTCAACTGCAAAGAGAAAC # Left flank : AATCAAGAAATCACCTACTTTATTAATTCATGGGAAAGGAATCGCGGGTCAAGGATCAATCATTTTTAAAACCCCCAGGGCGAGGAGTCATCGGTTTAGCGATCGCCGCTACTGTCATTATCACAGGAGTGGGTTTTTGGCAAGTATCTCAAATTAGAAAAGCCGAAGAGTTAAAGGCGGCTGCAACGGCTGCTGCAACTCCAGCCTCCACCCGCACCAGCGTTACAGCTTTGGGTAGGTTGACTCCTCAGGGGGAAGTGATCAAATTGTCCGCCCCTTCGGCTTCGGAGGGAGCGAGAATTGAAGAGCTGCGGGTGGAAGAGGGCGATCGCGTCAGTCAAGGACAAATCATAGCAGTTCTCGATACGCGCGATCGGCTCCAAGCCATCCTCCAACAAGCCGACAAAGAAGTTCAAGTCAAACAAGCAGAATTAGCCAAAATTCAAGCAGGCGCAAAAACCGGGGAAATCGTCGCCCAAAAAGCCGAAGTTTCCAAGTCA # Right flank : AACCTCTCAAAACGCTACAGTCGATCGACTAAAAGCCGAATTAGCCAACGCCGAAGCCGAGGAACAACGCAACAAAGAACTCTCCGAAACAGGCGCAATTTCCGCTTCCAGCTACGACACCAAACGCTTAGCAGTAGCTACAGCTCAACAGAAAGTTAAAGAAGCACAAGCTATATTAGAAAAAACCGTCGCCACTTTGCAACAGGAAATAGTTGAAACCAAAGCCACCATCAAACAAACAGTAGAAACAGGCAAACAAGAAATCAACCAATCCCGCGCCAATCTCAAACGCAAAATAGAAACAGGAAGGCAAGAAATTAACCAAGCTAGAGCCACTTTAAATCAAAAGATAGAAACCGGCCGAGAACAAATCAATCAAGCCGAAGCAATGCTGAAACAAAAATCAGAAACCGGCGAAGCACAAATCAATCAAGCCCGAGCAAATCTCGACCAAATAGCCGAAGTCCGTTCCGAAGACGTGCAAGCCGCCCGAGCTGCCG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCTCAACTGCAAAGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 11295-12716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000118.1 Tychonema sp. LEGE 07203 NODE_145_length_21230_cov_5.197981, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 11295 36 100.0 38 .................................... CGTGTGCAGAAATAGGACTGAAAAAAACAGAAACCAAA 11369 36 100.0 36 .................................... TTCTTGACTTCCTCGAAGGAGTCATACGAGTTATAA 11441 36 100.0 39 .................................... TGTCAATCGCAATATCGGCTGCGATTTGGGCTTCAATTT 11516 36 100.0 37 .................................... CTTGAACGAATTCGGAGTAAGAAGAAGTAGCCATGAT 11589 36 100.0 39 .................................... TCGACATACTTGTTATCCCTCGAAGAGCGATATAAGTAT 11664 36 100.0 32 .................................... CTTGGATGCGTGTTTGAACACTGATCGACGGA 11732 36 100.0 33 .................................... AACACGTCGCACTAAGTCACGATCGCGTTTCAT 11801 36 100.0 34 .................................... CCAATCTTCTTCATGTTCGCGACGGGAAGCAGAA 11871 36 100.0 36 .................................... CGTCACAGCGAGCACCACTGACACAACGTGCAGCAG 11943 36 100.0 42 .................................... AGCGTATGATACCCTTCGGCATCAGACCACGTTTTTACTCTT 12021 36 100.0 38 .................................... TTCTTAGCATCTTTAGTATCCTTCGTATCTACAATTAC 12095 36 100.0 39 .................................... TTACGGGAAATCCAATTTTAAAACAAGAAGACCCTTCTT 12170 36 100.0 34 .................................... ACTTAACATAACGAATAGCCATGATTTTTCTGCA 12240 36 100.0 36 .................................... TCTGCGTTAGACAGCCTTGGTTGATTTCTAACTCAA 12312 36 100.0 39 .................................... TGTCAATCGCAATATCGGCTGCGATTTGGGCTTCAATTT 12387 36 100.0 34 .................................... CTTGAACGAATTCGGAGTAAGAAGTAGCCATGAT 12457 36 100.0 44 .................................... ACCAAGCACAGATGATCTTTGCAGAAAAAGAAGCCCAAACGTTT 12537 36 100.0 38 .................................... ACGTAGTATCCGTCTTTGTACACTGACTTCCCTTTTAT 12611 36 100.0 34 .................................... CAAGAAAAGACGGAAGGGCGGGTAACGCGAAGAA 12681 36 94.4 0 A........G.......................... | ========== ====== ====== ====== ==================================== ============================================ ================== 20 36 99.7 37 CTTTCCGAAACCACTTCCCCGCAAGGGGACGGAAAC # Left flank : TCATCCTCGTGTCCGATCGGCTCTGAAGAGTCAAATATTTTTACCAGCTATTAGCAAGCAAAAGTTTTTACTCCGAATCTTGAAAACAAAATAATTTTTTGGTTGAAGCGCGGTTTGTTTGTCGCGGAGGCGGCACTACTAATCGACGCACTTCGGGCGATCGGTCAAACCGCGATTTTTTGGTTGAGGTGCGTCGATGGAAGTTTCTACAGTTTTGGCGCAGCAGCAAGCGAATGCTTGTACGCAAAGCTTTGAAGAAAGCGTTGATTTGCGCTGAGAGTGCGGTTTTTTGGTTTGTCTCAACTGCAATCGATGCACCTCGGGCGATCGGTCAAACCCCGATTTTTTCGTTGAGGTGCGTCGATGCCTCTCGGTGTCAGGATTTCAGCAGTTTGGAGAGGGTGCTTGTTGCAAGTTACCCCCCGTTTATTGCAAGTAAAAAAAAGGTGTGTCGATTTGACGCTTGAAACGCTTGCTGGGTAAGGGCTTGTAGCAGAACT # Right flank : CAGGAGGAGTAGGGGGCGAGAACCCGTGTCAGGTGCGGATACACCCGTGAAGGAGCAAGTTTTATCCGAGATATGGCAGATCCGCACCCGGAGGATTAACCTCACACAATTAAGGCTGCTACTGCACTTCATCAACCTGGAATCTGCTGTATTTTCCTCAAAAAATCCCCGTTTCTGAGGAAGTGCCGCTAACTCCAAATCTAAAATCTCAAATGGATTCGCCTCTGTGGATATAGAATTCTAGAATATACCGTCAAAATCCGCCGGCAGCCGTAGCGTCAACTTGGTGGTTTCAGGAAACCGTGGACTTAAAACAAATATTCAAAACGCCGAATCCCATAATCGGTGTCGTACATTTACAGCCTTTGCCAACTTCCCCCCGCTGGGGGGGGAACCTCAAAGCTATTATCGGAAGAGCCGAACAAGAGGCTACAGCGCTTGCTTCGGGCGGCGCACACGGTATCATTGTCGAGAACTTTTTCGACGCTCCTTTTGCCAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGAAACCACTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 4859-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000127.1 Tychonema sp. LEGE 07203 NODE_156_length_19411_cov_5.428490, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4858 37 100.0 33 ..................................... AAATCAAACTCGATCTCATATCCGTCCGCATAA 4788 37 100.0 39 ..................................... ACGGGGGATTATTACTGGTTCATTTGGCAATGTCCTAAT 4712 37 100.0 36 ..................................... TAGGGAATATCTCAGCTAGGAATCGAACCTAGTAGC 4639 37 100.0 36 ..................................... CTACCTAACTACTGACAAGACCATTTACAGTTTTCC 4566 37 100.0 35 ..................................... GAATGTATTGATATCTTCAATTGCTCTAGTATTTC 4494 37 100.0 33 ..................................... TTAAGCTTAGGAGGCGAAGTGCCTTCCTACAAA 4424 37 100.0 38 ..................................... TGGCACGATAGCAAGTGTTAGGCGGTAATGGATACCGA 4349 37 100.0 34 ..................................... TCTTCCTCATCTACTAAGAAAGAGAGAGAAAATT 4278 37 100.0 40 ..................................... CCTACCCCTTTTTTAAATAACAACCGATTCATCTTCTTGA 4201 37 100.0 41 ..................................... GAAACATTAATAGATTTTATGTTTAAATCTAAAGGTTAAAA 4123 37 100.0 35 ..................................... TAAAGCGAGATTGCTTGTCAAGCTACCATTGCAGG 4051 37 100.0 33 ..................................... CCTTTTTTGAATAGCGGGGACTTTGCTGTAATA 3981 37 100.0 34 ..................................... TATATTACAAAACTGACTAACTAGACCTCTACTA 3910 37 100.0 34 ..................................... GAACTGATAATTCTGCGATTCGCAAAGTTAAAAG 3839 37 100.0 34 ..................................... GGAGATGGTGGATTTGGTTCTACTATCTATCAAA 3768 37 100.0 36 ..................................... TGGACTTTACCTATGACTTCTACTATATCTTTTAAA 3695 37 100.0 33 ..................................... TCAGGGATAACTACGCTTATGTGTTGCGCTTCT 3625 37 100.0 35 ..................................... TCAAAAATTGATGCCAGCGGAACCCTAACCCCACC 3553 37 100.0 36 ..................................... TGATGCAGTAAATCGGGTAATCCCCAACAAACCAAC 3480 37 100.0 38 ..................................... GAAGAAGAATATTATCTCTAAACTGTTCAAAGTCTTCA 3405 37 100.0 35 ..................................... AATGAGAACTTACTGCAAAAATTACCTAATGACTT 3333 37 100.0 34 ..................................... AAATCATCAAAGATATTAGTCATCCACTTCTTAG 3262 37 100.0 33 ..................................... ACAACTAAGAGATAAATTACTCTTAGTTACAGA 3192 37 100.0 33 ..................................... CAATCACACCAAACACTTAAGACTAAGCCTAGA 3122 37 100.0 35 ..................................... TTTGAGTCATCCTAGCGGACGCTACTTTCTGACGG 3050 37 100.0 38 ..................................... GCAACTACACTTATTAGTAGATTTTTAGAGGTCATTCC 2975 37 100.0 33 ..................................... AAAACTATGCACGACAACGCTCGAAACATTCCC 2905 37 100.0 33 ..................................... GACCTGATTGGACCTCCGAAAAGGCGCTGGCCG 2835 37 100.0 34 ..................................... TGTCAGCTAATTTAATTAAATACCCTGGGGCATT 2764 37 100.0 33 ..................................... AGCCATTCTGTAGCGGTTTCAGTAATAGAACCA 2694 37 100.0 33 ..................................... TTCATAGATTTTCAATTTACCCCCCCATAATAA 2624 37 100.0 33 ..................................... TGATAAATCTAATGAATTCAACATGGCTCCCCT 2554 37 100.0 36 ..................................... TTTAGAGAGCAAGCGATCGAGCATTTGTTAGCTTGC 2481 37 100.0 39 ..................................... TTACCCAGTAGCTCCATCATGGTACCAAGCTTAGCTAGC 2405 37 100.0 33 ..................................... TGCCACTTGCTGAACGGCACGGGAGACGGTGAA 2335 37 100.0 33 ..................................... TAGGCAAGGGGGGGCATCACTTAAGATATCTCC 2265 37 100.0 35 ..................................... TTCCCTTACGCTACCCGGCAAAAAGGAGCCTATAT 2193 37 100.0 41 ..................................... ATTGCGGCAGGCCACACGAGAGGCTATTGAGGTACACCACG 2115 37 100.0 36 ..................................... ATCACGCTCTGCCATATTTGGGCGATCGCTTCGGGG 2042 37 100.0 38 ..................................... GGGGCTAATTTACTTATTATTGATGACATCGTAAAGAA 1967 37 100.0 34 ..................................... TAAAACATCAAGCTTACTGGCTGACACTCTGTGT 1896 37 100.0 42 ..................................... TTTAACCTCCTCTATCTTCTCACGGCTCCCGGTGGATAAGAA 1817 37 100.0 34 ..................................... CCCTGATGACATCGCCAAACTGATCGGCAGCAAA 1746 37 100.0 32 ..................................... GAAGTGGCACGAATGGGTGTCAGTATGAATAA 1677 37 100.0 32 ..................................... GCAAAGTTAAAGGCTCAAAAAATAGGACTAAA 1608 37 100.0 39 ..................................... TCAATTTCTCGAATTTGGGGATTTTCTGCAATTGGGCGA 1532 37 100.0 33 ..................................... TCGATCCTTCAGCACCCCAAGCATCAACCACAT 1462 37 100.0 39 ..................................... TAAATAGGTAATGATTAATACTTTAAAAGTATAGCTCAA 1386 37 100.0 33 ..................................... GCAGGCAACGATTTTACTTATCCCGATCCGAAT 1316 37 100.0 33 ..................................... CACACTTACAAAGCTTGACAGGGATTGACAAAG 1246 37 100.0 34 ..................................... TACCGCAAGCACTCGAAATTGCTGCTGATATTTT 1175 37 100.0 39 ..................................... AAAATATTCGATAATTTTCGCAACCTCTGCGGCATTAAA 1099 37 100.0 36 ..................................... GAATAAATGCCCTTCACCTAGTGATAAGGGAGATTT 1026 37 100.0 36 ..................................... AAATCCAACAATCGGATTACTACCGTTGCTAGTAGC 953 37 100.0 35 ..................................... TTCTCATCAAACACAATATAAGACTGTGCGAGAAA 881 37 100.0 35 ..................................... TACTTCTTTATTTCTATCTTTATTAGGTATTGTTT 809 37 100.0 36 ..................................... AGGTAGATAACAATTGAATTGTGCTTAGTGTTGCGT 736 37 100.0 38 ..................................... TCTAATGAGTATGAGAAGAAACCCAGTAGATATCCAAA 661 37 100.0 42 ..................................... CACCATTTCTTTGTATTAACTTATTACCCCATTTGCCGCAAT 582 37 100.0 37 ..................................... CCAGTTTTTCCACTCTTCAGCAATTTTGATGATTAAA 508 37 100.0 34 ..................................... CCGGTTGATCGACCTCTGATGCGACTAGAGCTAA 437 37 100.0 36 ..................................... GAGATACCCAATAGACCCTTCCCCTAAGTTGCTAGC 364 37 100.0 38 ..................................... TTTTTACGTCCTCTGAAATTTGTCGTTGCCAAACAGGA 289 37 100.0 43 ..................................... AGATAAACTACGATTGAATTATGAGAAGTGTTTCTTAACTCAT 209 37 100.0 40 ..................................... CTTAATATCGCATAGGCTTAAAAGGATGTCAAGTCTTTTT 132 37 100.0 34 ..................................... CCCCCGTTGATTCTCCAACCTCGGTAGAGCTTGC 61 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 67 37 100.0 36 GCCGCAATAAACTCCACTCCCTTCTAGGGATTGAAAC # Left flank : GGAAGACAAGCGGCGGACTAAAGTTCACAAAATTCTCAAATCCTACGGGCAGTGGATGCAGTACAGTGTGTTTGAGTGTGCGGATTTGAGCGAAACGCAGTATGCTAAGTTGCGATCGCGCTTGGCTAAATTCATCCAGCCTCCAGAGGACAGTATCCTATTTTTTCCGTTGTGCGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGGGTAGTTCCGATCGATCGAACTATTTTCTTTGCGTAAAAATTCGCCAACCTGTAGGTGTAAAATTTGGGGGGTCAAATTTTTAGGCTATAATCTATATAGAGTAAGGGTTTGATGCTCCCTCTCCGAAAATGAGGTTGGCGAAATCGCTAGGACTGTTGCTACATAAGGATTTTAGGTTAAAGTGCGAGCTATGGTATTGACAGAACGGGGACTGAAATGGTATTTTGGGATGAGGTTGGCGAAACTGAACCTTGAAAACCAAATAGAGCAATGGTTTCACACACCGGCG # Right flank : CTGGGAAAGGAGTGGGGGGGGGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATAAACTCCACTCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 11329-2385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000132.1 Tychonema sp. LEGE 07203 NODE_161_length_18505_cov_4.655186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 11328 37 91.9 36 ........TT...................G....... TTATCATCCAAAACAGACAAACCGGGCGAAGGGAAT 11255 37 100.0 35 ..................................... AGTTCGGAATTACCATCGGGAACCTATACCTACGT 11183 37 91.9 38 ........TT.....A..................... TTCGATCGCTCCTTAATCAAGAGTTCGCTCGCCTCCAC 11108 37 100.0 36 ..................................... TGGATCATTTTCTAATAAATTCCCGCTTGATTTATT 11035 37 100.0 41 ..................................... ATTGATTATTTGCCATCAATTTCCATTAAGAGAATTCAATC 10957 37 100.0 35 ..................................... CGAGCTAAGAACAGCGATTAAAACATATTGGGAGC 10885 37 100.0 41 ..................................... TTGGGGGCGATGCTACCAACGCTGCAGCAAGCAATTGTATC 10807 37 100.0 36 ..................................... GATGCTCAGGGCGAATGGGCCCGGTTTTTGTGGTAT 10734 37 100.0 37 ..................................... AATTTGGTTAATTTGTTTGCTGTAGGTAATTGGCTAC 10660 37 100.0 38 ..................................... TAAATCAAAAAAAGCGGGAGTTGGCGCTGGCGATCGAA 10585 37 100.0 40 ..................................... ATTGCATATCAAAGACAATCTTCTGACTACGAGAAAGAAC 10508 37 100.0 38 ..................................... CCTGTGCTCTAGTTGAAAGCTATTCTCGTACTACTTTG 10433 37 100.0 36 ..................................... AACGAACCGCGCCCAGAACCAAAAGACGAAGCCGAA 10360 37 100.0 36 ..................................... TTTCATTTACTTAGATGACGGCGGCGAGATTGCAGT 10287 37 100.0 36 ..................................... CCAGCAAAACTTTGACAGCTTAGGATTGATGCTAGA 10214 37 100.0 37 ..................................... ATGCATTATCCAGCCACGCGATACCAGTCGGCAGGAA 10140 37 100.0 36 ..................................... TGGATATATGGAGTCATTGCTGCCTATGGTCTTCGG 10067 37 100.0 40 ..................................... CCGAGTTGTCTAGCTACATTTATCAAGTTTTCTCTTTCGT 9990 37 100.0 34 ..................................... TTTGCGGCGACTTTCATCGTGTAACGCACGAATT 9919 37 100.0 39 ..................................... CGTCTTTGTGCCACTTTAAGGCACTAAAGAATCTTTGAT 9843 37 100.0 37 ..................................... ATGCGTCCCACAAAACGCATATTGTTCAATAATTTTA 9769 37 100.0 37 ..................................... CTGACCCTGTTACTTGTGTTTCTTTTATTAATGCTAA 9695 37 100.0 36 ..................................... TTGGGGCGCTTGCCTTATGAAAAGAATGCTCGAATT 9622 37 100.0 37 ..................................... TTTCCCCCAGTCAGTCCACCACCTAGAGTCCTTACTG 9548 37 100.0 37 ..................................... TGAGCGCCTTTTTTATCTCCTCATCTGCTCTTCGCAC 9474 37 100.0 38 ..................................... GTCTAAATCTCCTTCTTCAAGCCAGTAAGCAATGTATT 9399 37 100.0 35 ..................................... CAGATTGGAGAGTCAGTTGCATCAATTGGGCTTAA 9327 37 100.0 39 ..................................... GTCGATCGCACAGTCTCACCCCAAAGCATTAATTTTAGT 9251 37 100.0 37 ..................................... AAAAAGTTCATAGTCGAACCGGAGCCAGACAGTACAA 9177 37 100.0 37 ..................................... AGTTAATCAATAAATACAACAATATTACAGTTGTAAA 9103 37 100.0 42 ..................................... TTTTAAAGATTCTTCAGCATCAATGATTGATTCAGCGCTAAA 9024 37 100.0 36 ..................................... TGTTGAGGCATTTTGTGAAAAAAACCCAAGTGCAAA 8951 37 100.0 36 ..................................... GTCGATCTGACTTTCTTTCCAGATTCTAAAATCGTG 8878 37 100.0 35 ..................................... TGTTACGCGCATCTCATGCAGTTTTTAAAGTTCCA 8806 37 100.0 37 ..................................... TTTTAGCGCCTCCAACTGTTTGAGCGCCCGTTAATGT 8732 37 100.0 38 ..................................... ACCTGCAATACTCCGAAGGTGCTGTATTGCTTCAAAAG 8657 37 100.0 39 ..................................... ATCGCGCCGATGGGTGCGTGATGTGAGGATGTGGGACAT 8581 37 100.0 36 ..................................... ATTTGGGTGGCAAATTTACGATCGCCCAAATTAACC 8508 37 100.0 38 ..................................... TGGTGCCGCAACATCTGGCTTTGGAATTACTATATCCC 8433 37 100.0 34 ..................................... CTAGCGTCCCATTGAACGGCCAATAGGTTGTCAA 8362 37 100.0 37 ..................................... CGGGTTCGGGTGTAGACACTGCGGGTTCGGGTGTAGA 8288 37 100.0 36 ..................................... CTGAAGCAGCAGGCGCATACTTAATCCCTATCCAAC 8215 37 100.0 38 ..................................... TCACCTTCATTGGCTCGTCATACATTTCCTGATAGGTA 8140 37 100.0 38 ..................................... TCAGCCACCGAAACAGCATCCGACTGGAATTATCCAAG 8065 37 100.0 39 ..................................... ACATGATCGTCTTACCGTTTTCGAGAGGCAGTTATACTG 7989 37 100.0 38 ..................................... ACCGTGGTGGCCATTGTGCAAGACAAAGGTGCAACAAT 7914 37 100.0 39 ..................................... TCGAGGTGGAATACTTGCCGACCAAATGGGGCTGGGTAA 7838 37 100.0 36 ..................................... AGTCGCGATCGGATTCTTTAGGCGAATTGATTTCTA 7765 37 100.0 35 ..................................... TTTTACTTTGAGAGCAGCCGGAAACTCTGAGAAAA 7693 37 100.0 37 ..................................... CAGGCGGGGGATTTTTAAATAATGTACTTGGGATTTT 7619 37 100.0 39 ..................................... ATTGCCTGCATAGCAATTCGCTTGTATCCCCGCACCATG 7543 37 100.0 35 ..................................... TTTATGACATTAAAACATGGATTGCAGATAGGTTG 7471 37 100.0 38 ..................................... TTAATTGTTGTAAACGTTGTTCCCAAGTCATAATTTAT 7396 37 100.0 39 ..................................... TTTCCCGAATTCTGACTCGGTGTTGTCAACAGAAATTTG 7320 37 100.0 37 ..................................... GTAACTCCAACACCCATCTATATCAGCTCCATATCTA 7246 37 100.0 36 ..................................... CTCATTCTATTTAAGGGTTCGGTGCAATTATCACAA 7173 37 100.0 36 ..................................... CTAACATTTTTTTTATTGCTATCTCTCTGTTGTCTG 7100 37 100.0 36 ..................................... CAGCGATGGCAAGCCCAATGCAACATCAGCCTCTGC 7027 37 100.0 41 ..................................... TTTTGCGCCGCTTGTTCGGATTTATCGGTAGCCGTTTTGTT 6949 37 100.0 42 ..................................... CTGGAACTTTGCCCACCAATTTTGGAAATCTGCCGATTTTTC 6870 37 100.0 40 ..................................... CTTTTTACTGTCACGCGCAAGTTTTGACACCCAACGTAGT 6793 37 100.0 40 ..................................... GTTGTTGGTGAATCCTCTGCCGCCCCCAACTCCCAATCGT 6716 37 100.0 35 ..................................... AACCCCTCCATCATTGACAATAAATGGCGGGGGAC 6644 37 100.0 37 ..................................... TCTGCGTCCTGTTCGATGTCGCCAGAGTCTTTTAAAT 6570 37 100.0 36 ..................................... TCGATTCGCCATTCGCACCCTCAAAAGTCCACCAAT 6497 37 100.0 38 ..................................... TTCGGTAGTAGCTTCCCAACCTCCCTGGATCACAGGTT 6422 37 100.0 34 ..................................... AAAATGCGATCGGTTAATTCTTCAATCTCGAATT 6351 37 100.0 39 ..................................... ACCTAGAAAAAGAAGGTGCAATGTGCGCCACTGTTCAGG 6275 37 100.0 35 ..................................... CTACACCTAAATGGACGGTCAAAGTGGCTCGTAAG 6203 37 100.0 38 ..................................... AGCACCTTGCCAGCAAAGGCTGTAATTTCCTCGATAAA 6128 37 100.0 36 ..................................... TTTTCCTGGAAAAAAGATTTGGACAGAGATGTAACC 6055 37 100.0 35 ..................................... CACTCATCTCTGGTGCAAACTCCATTGCAAAAAAT 5983 37 100.0 35 ..................................... ATTAAAAAGTGCTAGTGATCCTGATAAAGCTCAGG 5911 37 100.0 37 ..................................... TAACGCCGGCAACGAGCGGGCAAGAGGCGATTCTATA 5837 37 100.0 36 ..................................... TTTTGCTGTTGCGAGCTTCTATTTTTCGAGTGAATA 5764 37 100.0 37 ..................................... GTGCACGACGCGGCCAGAATCGCAAAAGTGATGGAGT 5690 37 100.0 36 ..................................... TATTGAGTTCTAAGAAGAGACAAATGACAAACTGGA 5617 37 100.0 34 ..................................... ACTGGTAGTAAACCGAATCAAGGCGCAATCGGAT 5546 37 100.0 39 ..................................... TAGCAGTTTGTGCCGTCGCGCTCTTTGGCAGTGGATATT 5470 37 100.0 40 ..................................... GCTTAGGGAAGCGTAGAGCAAGACTGCCTTTATCTGAGTA 5393 37 100.0 37 ..................................... CAAGCCCGATCGCTGGTTGTTTAGTTTGAGAAGCGAA 5319 37 100.0 39 ..................................... TCAGGCGGACAACAGCGGAAACATGAAACTCTTTGGTTT 5243 37 100.0 37 ..................................... ATGCGGTGCTGCCCTCAACGATTCCTCACCCGTTCAT 5169 37 100.0 36 ..................................... AACGGGGAAGAATGGACGCGGCATCTATATTTTCAA 5096 37 100.0 34 ..................................... AAAGCTTTATTGAGTTGTGCAGGTGATAAATCAG 5025 37 100.0 38 ..................................... TCTTCCTCTTTGTAACTAGCGTTAAAGTGCCCCCAAAT 4950 37 100.0 35 ..................................... CATTCCTCTTTTGCTGATACACCGCTACCAATAAT 4878 37 100.0 36 ..................................... CGAAAAACCGTTCATGGTTGATGACTTGCGAGTGTT 4805 37 100.0 39 ..................................... CCAGCGCCTTCAAAGCTTGAGTGTTTGCTCTGTGATCGG 4729 37 100.0 40 ..................................... CTTTCATGAGCAATGGAGAATCAGCTAAAGCCCCTAGCTA 4652 37 100.0 36 ..................................... CTCCAACGCCTGATTTACCAGGCACAAATGGATTAG 4579 37 100.0 36 ..................................... GCAAGCCAGGCTGCTTTGTTCGCTTGAAAAACTTGA 4506 37 100.0 34 ..................................... TGGAGTTGTATCGTAATTCCGACTTCTTGGATAA 4435 37 100.0 37 ..................................... ACATCTACAGGCGATCGCAAAAACTCTCTGGGCTGAA 4361 37 100.0 35 ..................................... TGTCCGCGCTTCCTCGTTTAACGCCCTAAATACGA 4289 37 100.0 41 ..................................... CCTGCGACCGAAGCGAGGTGACAAACGGTACGGCAATTAGT 4211 37 100.0 41 ..................................... TTCTCGCAGTCGCTCATTTTCTATCATCAATTCGCCTATAT 4133 37 100.0 37 ..................................... TTGGCCTTTTATCAAACTAACGGTAAGCACTTGCGTT 4059 37 100.0 42 ..................................... CTGTCTTGCCTTCTAGCCCCCTAGTAAAAATGCGAACCTTGT 3980 37 100.0 35 ..................................... TTAATAATGTTGATGGGGAGGGAATATATTGATTG 3908 37 100.0 37 ..................................... TCGAAAACTCGGTCATTGGTCGAGATGTGGAAGTTGT 3834 37 100.0 39 ..................................... ACTGTAAAAACTGTATTCGCAGTGCGTTTAACTTGGTAA 3758 37 100.0 37 ..................................... CTAATTTATCTGCCGTGGCTAATTCTGTTTCTGTATT 3684 37 100.0 38 ..................................... GCTTGAGAAGCTTCGTCGATCGCGGTAATGAGGATTGT 3609 37 100.0 35 ..................................... AAGAGAAGCTGAAGTCAGTTAAATTAGTTTTCAAA 3537 37 100.0 43 ..................................... CTGGATCGTCGTCCGTTTCGTCTGTTAAAGGCGGAATTCCTAG 3457 37 100.0 37 ..................................... CTCCTCAGACTATACAGACTTATACAAACTTATTACA 3383 37 100.0 37 ..................................... TCTGGCTTATCAATTTTGAGCGAAATTCCAAGACGAA 3309 37 100.0 39 ..................................... ACCGCTCAAACTAAAGCCAGTAATAAAACGATACTTAGG 3233 37 100.0 36 ..................................... TATAGAGCTACGTTACCATGTAGCTAGAATAACAAA 3160 37 100.0 36 ..................................... ACCGTCTAAAAAGTTGACCTGATAACTGACCGACAT 3087 37 100.0 38 ..................................... TTGAGATATTTTTCTGCTATCTCAGTACCAACACTTAG 3012 37 100.0 41 ..................................... TCATCGGCGACGGGGATTATCATCTTGCGAACCGGATTTGC 2934 37 100.0 36 ..................................... GTTGTAGGCAGTTCGTAGCTGTTTCTGCAAATCAAG 2861 37 100.0 36 ..................................... TGGGGCGCTGCTCTTGAGGCTCAACGAACAGCAAGA 2788 37 100.0 37 ..................................... AGTGGGCCGCGTCGGAGAATTGGGCAATGATGGCAAT 2714 37 100.0 37 ..................................... CGCGGTTAAAGGAAGCGACTTCGACTGTGTGTTGATT 2640 37 100.0 37 ..................................... TCTTCCACGCCATTAAAACGAACTTCTGCACTATTCA 2566 37 100.0 36 ..................................... CTTGAGTTTGTGCAGTGGACAAAGCAGTGGACAAGT 2493 37 100.0 35 ..................................... TTCAATAGTTCGCCTTGCTGAGTGGACATTTGGAT 2421 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 121 37 99.9 37 GTTTCAGTCCCGTTGCCGGGATTCTATTAATTGAAAG # Left flank : CGGGAAAACACTTTGCAAAGGGGCCGACAAAAACTTTGTGTTCGATGCCCGAAACTGTTGTCAGCAAAATATACTTAACTTCGCCGTGCTCTGCGACTAACTCGTTTAGCAAGCGGATGCACTCGGGAGTCGGTGCGACGGGGGCGTAGACTAGGAGGCCTTGAGGTTCTAGTTTAATTACTGTCATCCGCACCGGCACAATTACGTAGAAAATGCCTTGGAGTTGGTCAAAAGTCCAGATGGTGTCTTTGACTATTTCTTTGCGGATGGTGCGCCGCTTGCTGTAGGGATAGATTGGGACAAGAGGCCACAAGGGCCAGGAAAAGTCCCTGGAGTTTGCTGCTTCTGATGTTGGTGTGCTTTCGCCGTGTGCCACTTGGCGCTCCCTTTCCGAGTTTTTGTGCGATCGAACTGTTTTTATATTATTTCAGGCTGGGGCGCGGATTGGTTGAGTTGAATTTTAGATCCCGAATTCGGTGAAGAAAATTTTTCTTAGTTTG # Right flank : CCCGATCGCCCAAACCCTGTCAGGGAGAGGCTTCTGAAAACGGTTTTCGTCAACCTCATTTTGAGCTTCATTACAGCCCAGCTTATTGCCACAAATTCGCAACAATTCCGACTGCCCAAACGTTGAAACTATTGATTTGTCAAGGTTCTGGCGTTTTTCGTCAACCCCCGCAAGATTTGCCCTCACTTCGGTTCACGAAAATCATCATAGATCGATCGCCATTATCTGTCAATCAATTTCAGATGAAAAATTGTAGAATCGACCCCAGCAGAAAAACCCAATTCCCAGACAGCGATCGGGTTTTTCTATTTGAGGTCGATCGCCCCTACCTATATATAGCGGTTCTCAAGCTTGGTGAGGTATGCCCAATGCCCCATGCCCCATCCCTCCGCAACGCTAGAGCCCCATGCCCAATTGCCCTGTTTGGCCAATGCCCAATGCCCAATGCCCACTCCTAGCACCTCATATGAGAGCTTGAAAGGCTATATATTAATAAACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTTGCCGGGATTCTATTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 5678-15112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXD010000116.1 Tychonema sp. LEGE 07203 NODE_142_length_21350_cov_5.970692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 5678 37 100.0 36 ..................................... AGAAGATGTTGAAATCATTTATTATACCGCTTTAAA 5751 37 100.0 34 ..................................... GTCCGCAAACATTGCTATATATTCTTGAGATGTT 5822 37 100.0 34 ..................................... ATAAATATCTTTGAACAATTTTCTATTTCTATAA 5893 37 100.0 36 ..................................... TTCAGTTCGTTTTTCATGATTTTGCTCCTAAGTTAG 5966 37 100.0 33 ..................................... TTGATAATATTTTGTACCTCAGATTTTTTCCAA 6036 37 100.0 41 ..................................... TCAAGACCCGCGATTCCTCCTAACACGGCAGCATAATTGAA 6114 37 100.0 36 ..................................... AACGCAACTACTTTTGTTGTCATTTGATCTGTCTGA 6187 37 100.0 36 ..................................... GTAATAGTTTAACCTACTAACTCTTAACCAATATTA 6260 37 100.0 37 ..................................... CATTCTTATATAAAAGCGCCTTCATAGACGATTTAGG 6334 37 100.0 33 ..................................... TAGCTGTAGAATTGCTCTACCTTTAAAGAGTAA 6404 37 100.0 34 ..................................... TAGCTGAATTAGAAGAATCATTAGCCGATTTAAC 6475 37 100.0 33 ..................................... TGATGTTGAGATATACACAAGTAAGCTACCTGT 6545 37 100.0 36 ..................................... GGAGATAGGTACGACGGGTGGCTGAATAAGCCTCAA 6618 37 100.0 38 ..................................... CTGTAACTCCTTTAGACTAGGTTTGACGTTCTTAAAGT 6693 37 100.0 34 ..................................... GGCAAGTGATTTGATGGCAGAAGGGCTGCCAAAA 6764 37 100.0 40 ..................................... GCGCAGAGGAAGATATCTAGTTTCTACTACTCTAAAATTA 6841 37 100.0 34 ..................................... GAATCACAATAATATTCCTTTAACTTATTGTTCT 6912 37 100.0 33 ..................................... ACCTTTCCCTTATCATTTTAGTGACCGTGACGA 6982 37 100.0 33 ..................................... CTATGTTATCCTGCGATCCTATCTTGCTAGAGA 7052 37 100.0 37 ..................................... GTATGCAGATACAATAATCATTGTGCTACCTCAATTA 7126 37 100.0 33 ..................................... CAACCGGATTGAGGATTATGAACTGTGTGTGCG 7196 37 100.0 36 ..................................... TAAAGGCGCATACTCAACCTCATCTCTGCCAATTAC 7269 37 100.0 35 ..................................... TTGATGCTCCCCAAAATTGTTGAAGTGTATCAGTG 7341 37 100.0 34 ..................................... GCAAACTATAATTTCCCTGCCCAATATGGGAATT 7412 37 100.0 34 ..................................... GAACACCGCTGCCATAGGCTCGGCAATTTGCCTT 7483 37 100.0 33 ..................................... GCAAAATCAGAGAAGCTTTGAGGGCGCTCTAAG 7553 37 100.0 33 ..................................... TAATTTAGGGTTATTTTTCCCTCCACCCATCAT 7623 37 100.0 33 ..................................... TGGTAAGTTAGCGGGAACGTTAATCGAGCTGTT 7693 37 100.0 33 ..................................... CAATCATCAGCCTCCAAACCCTCCATCATAAGG 7763 37 100.0 33 ..................................... CGCCTGCATTGACCTAGTACACACGCGGGACGC 7833 37 100.0 37 ..................................... ATTACTAACATCGAATGGCGAACCGGAAAGGGTCACG 7907 37 100.0 33 ..................................... AGAAATTAAGGCAGATTGAGCGATACGATCGCC 7977 37 100.0 34 ..................................... CCGCAAGAGTTTATAGACAGCCTGACAAAACACG 8048 37 100.0 42 ..................................... GCATATTGCACCTGTTTTTGCCCTAGCTTAGCTGCCGCAATA 8127 37 100.0 38 ..................................... TATTTTCTGCCTAATTTCTAACTCTAACCTGTAGTTAA 8202 37 100.0 34 ..................................... AAATTTATACCCAATAGGTGTTATTACTTCAAAC 8273 37 100.0 35 ..................................... TGGGGATGCTGCTACTCTCAAATATTCATCTTTCT 8345 37 100.0 36 ..................................... TGCTAACTAAAATTGCAGAGATTAACTCCAAAGTTG 8418 37 100.0 40 ..................................... CTCTTGAACTCGAACCAAAATAACTTGTCGGGTATCTAAG 8495 37 100.0 35 ..................................... CTAGTGACCCTCTGCACTCCCCATTAAACTTTTTA 8567 37 100.0 37 ..................................... TTGAAGAATATCCGAAGTTTTAGAAATATCCTCAAAC 8641 37 100.0 37 ..................................... CATTAGTATTAGGACATTTATTAGCTGTTGGGTTAGT 8715 37 100.0 36 ..................................... GTAACCTATCTCTGGTAAGCATTATAACTATCATCC 8788 37 100.0 33 ..................................... TAGTACCTCATCTTCGAGAAATTCTTGGTTAGT 8858 37 100.0 36 ..................................... TACTTCTTTCTTGTTTTCTGGACTGATGTAGTTAGG 8931 37 100.0 35 ..................................... CAGTAAGGTCTTTATTGTATAAACCTGCATCTATT 9003 37 100.0 38 ..................................... TTTTCAATTCTAATAAGATAGATAATCCTTCTATTTCA 9078 37 100.0 37 ..................................... GTATAAAAGTAGTATTAAAAGTAACATATCAAAACCC 9152 37 100.0 37 ..................................... CTCAGCTATCTTGATGATTAAATTCTCTAAATCCTGA 9226 37 100.0 33 ..................................... AACCGGGGTAATCTTTCGCCTTGGACTGGAACT 9296 37 100.0 35 ..................................... AAATCGTATTCTTGATTTACTCAAGTCGATCGCTA 9368 37 100.0 34 ..................................... GTGGGATAGCATAATGCTTCTCCATCAAATCCAA 9439 37 100.0 35 ..................................... GTAACCCCAACAATGCTCGCACTGTGAACACTTGT 9511 37 100.0 38 ..................................... ATTGCCAAAGCTTTATTGGGTGCAGCCGAAATTGCTGC 9586 37 100.0 36 ..................................... AAAGGGAGAGCCGATTAGCAGCGAACTCTCCCTTCT 9659 37 100.0 32 ..................................... CAGAAAACCCCCGGATGGAATTCTATCCAGAA 9728 37 100.0 34 ..................................... TAGCACAACCAATGCCCCGGCAATTTCCGGTGCT 9799 37 100.0 33 ..................................... GAAAAGTTCTTCATCTCCCCAACGCCTTCCCAG 9869 37 100.0 34 ..................................... GGTATGTGAACCGATAGCCTGGAGCGTGTGGCTT 9940 37 100.0 31 ..................................... TAGTTCTCCTATATAAAACCAGACAGTTACC 10008 37 100.0 41 ..................................... TTCGCTGTGGATATTGCTCATTCTCGGCAGTATGCGGAAGC 10086 37 100.0 33 ..................................... GTGCCGACCGAACTTCAGAAACTGCGGTGAACA 10156 37 100.0 33 ..................................... GAGAAGTTTGACGATCGGCGGAGTTCTCCAGAA 10226 37 100.0 34 ..................................... AGGGACTTGGCGGTATTTAGGCGAAAAACTTGGC 10297 37 100.0 34 ..................................... TCGCAGTCCGTCGGCAAATGATTTTATCTCTACC 10368 37 100.0 33 ..................................... TAAAGTTTTTGCCAAGCCCGTAAAAACCCCTTA 10438 37 100.0 33 ..................................... ATGTAAAGGATTTGAAGATTTATTTTAGTGGAT 10508 37 100.0 32 ..................................... CAGAGAATAATGCTATGGCTGCTGAGATTATT 10577 37 100.0 38 ..................................... AGAACTGGAAGATTTTCATAATTGATTTGACTTGCTCC 10652 37 100.0 39 ..................................... CAAATTTAACGCAACGATAGAGCAAGTTAAACGGCATTT 10728 37 100.0 33 ..................................... GCCATTTTTGAAATCTGTATTCTAAGCTCATCT 10798 37 100.0 39 ..................................... TTCGATTTTTGTCGCAATTGCCGCTACTAAATTTCTGTC 10874 37 100.0 35 ..................................... AAGATTCGGACGACGAATTTAAGAAATCCTGTCCG 10946 37 100.0 33 ..................................... TTCGATTTTTGTCGCAATTGCCGCTACTAAATT 11016 37 100.0 42 ..................................... TAACAATATCGACCCCCCTGAATACTTCTAATAGCCTTGCTA 11095 37 100.0 34 ..................................... AAGGTGTTAGCCGCCAATTGCAGGTTATCTACAA 11166 37 100.0 33 ..................................... TCTTGTCTTTCTGGAAGGATAGAAGCACCTAAA 11236 37 100.0 36 ..................................... GATAAATTAATAGAGTCTGCTAAATTTAAGGTGCAG 11309 37 100.0 44 ..................................... ATTGCGGCGATGTCGCACCAGTGAAGCCCTCGGTCTTTGTTGGA 11390 37 100.0 33 ..................................... CCCGGAGTGCCGTGAGGCAATGATGCCTGTACT 11460 37 100.0 33 ..................................... CTTCAATCTTTTTCTTGCAGCCCATAATCTTTT 11530 37 100.0 43 ..................................... TTCTGGATTGTTTGGAATATTAAGTGCTATATTGGGCCGCAAT 11610 37 100.0 36 ..................................... CTTCAATTTGAAGGAACGCCAAATGCTCCATTTCAA 11683 37 100.0 34 ..................................... TTCAATAATGCCACCTCGCAATCCGAGAGACTCT 11754 37 100.0 34 ..................................... CCGCTTTGCTTTCACTTGCGGGGCGATTTCTTGA 11825 37 100.0 49 ..................................... CTCAATGAAAGCTACCAGTGAGGCGATCGATTGAGCGTTTAGATCCTGT 11911 37 100.0 36 ..................................... GCTATAAAAACTACTTGATCGAGACTGCACAGACGC 11984 37 100.0 38 ..................................... CTATCTGGCGCGAGTATAAGCACATTGTTGACATACAA 12059 37 100.0 33 ..................................... GGATGATCGGCGATCGCCCTGAAGATCAAACTT 12129 37 100.0 33 ..................................... TTCCATCAACTGAGAAAGGCTGACAGGGAGGAC 12199 37 100.0 38 ..................................... TTCTCGGCTACGATTCAAATACTTGTGATTTGCCTCAT 12274 37 100.0 37 ..................................... TGTAAAATCAGCCATTTGTCATCCTCCTTTTTATTTC 12348 37 100.0 33 ..................................... GGAACAAGTTCGCAAAAAGCATCAAGCTCGCCG 12418 37 100.0 37 ..................................... AATTTTTTCCGCCCAAACTCCCCAAGAGGAATCGTAA 12492 37 100.0 43 ..................................... TCGTCTAGGTTGATAAGTGACCCTTGCCGAACTTCGGCAACAA 12572 37 100.0 39 ..................................... GACACAAGCTTTTTACCGTCAAGAGTTTGACCTTGATGA 12648 37 100.0 34 ..................................... TGCACCTGATGGAGAAATAGAAAAAACTGGAATT 12719 37 100.0 37 ..................................... TAGTTACCCAATTAGTCACCGAAGGCAAAATAAGTTG 12793 37 100.0 38 ..................................... TGAATGCACATATTTTTGTTTGTTGGTAGTGGCTCCCA 12868 37 100.0 35 ..................................... GGTCTACGGAACATTTTCTCCCCAATCATCCTGAA 12940 37 100.0 34 ..................................... TGAGTTTTTCACCACCAAGACTGAACATTCGGAG 13011 37 100.0 38 ..................................... AGGGCGTATGTGATTTTTGGCGGCGAGAGCGATCGGCT 13086 37 100.0 40 ..................................... ATGGCTAGCCCCCGCACCCGCAAACATTAAGTGTTGCGAT 13163 37 100.0 34 ..................................... CGGAACCTCCCTGTCGGGTTAAAAAAAAGAATTC 13234 37 100.0 39 ..................................... AAAGAAAAACACAATGTAACTTGATATTTAGTTCTCAAA 13310 37 100.0 33 ..................................... ACCGTATCGGATATTATTGTGATTGAATTTATT 13380 37 100.0 39 ..................................... GTAAAGGATGCTATCGATTCCCATCTCCAATGCGAGCCG 13456 37 100.0 40 ..................................... GTTAATTCTTGCTATTATTTCTCCGGTTTCGCCTCTATTT 13533 37 100.0 33 ..................................... CTAAATTGGTATTTTTCTCTGCCTAGAACTAAG 13603 37 100.0 36 ..................................... AAAAGCTTTACCCTCAAGTCAATTCAGCGATATTTG 13676 37 100.0 43 ..................................... TTTAGGTACTGCGATCGCACAAAAGCCTCGAACTCGCCCCTTA 13756 37 100.0 34 ..................................... AAAAGATGGACAATTACAACATCGAGCCAAGCTT 13827 37 100.0 34 ..................................... AGAAATCATTCGCACTTCGCACCCCCAGTCCGCG 13898 37 100.0 36 ..................................... TTTAGAGCCATCAGCAGCCCTTATTTGCCCTTCTGA 13971 37 100.0 33 ..................................... CAAGAATATAGTTATGGGGAATTCATGGAAGAA 14041 37 100.0 40 ..................................... CACGTAAACGCCCTGCCCGCAGCATCTGAAATCTAATGCC 14118 37 100.0 45 ..................................... TATCAATTTGAAACCATTTAGCCAGCCGAGGCATGAGCCAATCCC 14200 37 100.0 37 ..................................... CTAAATCCTTAAAGTAATGGAGATTACCCCCATCAAA 14274 37 97.3 34 ......................A.............. TTTATCAGAGGAGAGATACCAAGCATCGTAATAA 14345 37 97.3 33 ......................A.............. TACTCCTAGTGGAACTCTTGGTACTACTGAAAC 14415 37 97.3 38 ......................A.............. GCAAGCAATTGATAAGCGAATCAAGAATGCAGCACAAG 14490 37 97.3 31 ......................A.............. GCTAAGAAATCGTTGATCACATCCATCTCGT 14558 37 97.3 35 ......................A.............. TTGTCTAGCGTTACGCCGTAAGTTTTGATTTTTGA 14630 37 97.3 39 ......................A.............. GTCTGGGAGTTTACCGGGGAAATAAACTAACGTGACCAC 14706 37 97.3 33 ......................A.............. ACTTGATTGCGCGTCACTGGGCTTATGTGATGC 14776 37 97.3 38 ......................A.............. GCCCAACTTCATCAATGAAATTATCGTGAAGTCTCCTA 14851 37 97.3 38 ......................A.............. AGGATTTAGAACTTGCGCGTGACAATAAAATGTCCAAT 14926 37 97.3 42 ......................A.............. CATGAATTGAGCAACCTCCACATACTCGCCACAGAAATAGAA 15005 37 97.3 34 ......................A.............. TTTAAGCCAATTTTCGAGGTACTTTCAGCCTTGA 15076 37 94.6 0 ..............T.......A.............. | ========== ====== ====== ====== ===================================== ================================================= ================== 130 37 99.7 36 GCCGCAATCAACTCCACTCCCTTCTAGGGATTGAAAC # Left flank : AGTGCCGTCAAAGTCGAAAATAATTAACTTGTACTGATTCATTTTAGTCAAAAAATCCTATAATTAGAATATGTGCGAATAAATCTTACCTAGGAAGGCGAGTTTTGCCGCAGTCCTAAACTCCCTTTTATTAAAGTTTACAGCCTAAACCAGCCCTTTGTTTTTTCCCTTGTGTGCTTGCTGTCAGGGTAAAATTGAGGGTATTGGCGGGGTAGTCCGGGGCGATCGAACTATTTTCTTTGTTTGAAAATTCGCCAACCTGTAGGTGTAAAAATTGGGGGGTCAAATTTTTCGGCTCTAATCTATATAGAGTAAGGGTTTGATGCCCCCTCTCTGAAAAATAGGTTGGCGAAATGGCTAGGATTGTTGCTGGATAAGGATTTTAGGTTAAAGTGCGAGCTATGGTATTGACAGAACGGAGACTGAAATGGTATTTTGGGATGAGGTTGGCGAAACTGAACCTTGAAAACCAAATAGAGCAACGGTTTCAAACATCGGCG # Right flank : CTTAGAGCTTCCTATGCCCAAATACTCGCCCAAAACGATCGCTCTCGTAAAAAACCGGGTTTCTTGATTGAGAGTGTATAAGTCCGACTGCTGCAAAAAGCCCGATCGACCACCAGCCTCACAAACAAGATAAACATCCGCTATAATCCAGAGTTTGCGTGTATTAATTGGTTAAGAGTAAAGTATTGCATCACTTTTGTGTAAAGTCCTATGGCACTAATTGTTCAGAAATACGGCGGAACATCGGTTGGTACAGTCGATCGCATTTTGGAAGTAGCGCGACGAGCAGTCAAAACAGTAAAGCTGGGAAACTCCTTAGTTGTCGTACTTTCGGCGATGGGAAAAACGACTGACGGTTTAGTGAAACTGGCTAAGGAAATTTCCGCAAATCCCAGCAAGCGGGAAATGGATATGTTGCTCTCCACCGGGGAGCAAGTCTCGATCGCGCTTTTGAGCATGGCACTGCAAGAAATGGGACAGCCCGCAATTTCCTTTACAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATCAACTCCACTCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //