Array 1 26365-26096 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQT01000013.1 Pseudomonas aeruginosa strain PA_151345 NODE_18_length_109633_cov_32.1823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26364 28 100.0 32 ............................ ACAGCGATAACAGACACCAGGGAAACGATTTC 26304 28 100.0 32 ............................ GGACTGGGGCGACAGCATCGTCGAGCGCCTGA 26244 28 100.0 32 ............................ AATGGGCGACCGGGTCGTCGCGATATCCGTAT 26184 28 100.0 33 ............................ ATGAACGCTGCCGTCGAAATTCCCATCCGTGAC 26123 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTTGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCAGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCAGACGATTTCTTACGCCCTTATAAATCAGCAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCAAGAAAGAACAGAATGGCCAGCCTGCGCCGTTTATTGCCGTGTAGTCCCGTAGAGCGAATACCGCCACAGGCGATATCCGCCGATACCCCGGATACGCGGCGGATAACCGCAGGCGGTTATTCGCCCTACGGATCAGGGCTTCGGCATATGGAGGTCAGGCCTGCACGAAGTCATGCCTGACCTCCAAGTGACAGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGCGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAGGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGGACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACGAAAAACAGCTTGACCAGCAACCATGAAGCCCGCTCGAACATCCCTTAGGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 108492-109419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQT01000013.1 Pseudomonas aeruginosa strain PA_151345 NODE_18_length_109633_cov_32.1823, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 108492 28 100.0 32 ............................ TCGCCGCGGGATTCTCCGAGCTGACGATTGGC 108552 28 100.0 32 ............................ TTGGGCTCGGCTGGAAGGATCGCCGCAGTGCG 108612 28 100.0 32 ............................ AGTCGGGAACGTGATCTTGGCCAGCGCCTGAC 108672 28 100.0 32 ............................ TGGAACACCAGCCGGACCCGGACGACCCGACC 108732 28 100.0 32 ............................ ATGCCCCACAGCACAGCTCGGGCGACGTACGC 108792 28 100.0 32 ............................ CTGCCCTCTGACCCTCTGGCGAAGAGCGGGAT 108852 28 100.0 32 ............................ TTTCTCCGGGCAATAAAAAAGCCGGGGCGGAC 108912 28 100.0 32 ............................ ACATGCATCGCCCGCTCACCTTCACCGCCCTT 108972 28 100.0 32 ............................ ATTGCAACCGTCAACTCACAGAGTGCATGACC 109032 28 100.0 32 ............................ CTTCTGCGAGAGAACGAAGGCCTGATCAAGCA 109092 28 100.0 32 ............................ ATCGAGCAGTGCATTGCCGTCTACAACCAGCT 109152 28 100.0 32 ............................ AAGTACTGCGCTTCTGTCAGCACTTTGCCCTG 109212 28 100.0 32 ............................ TGCAGCAGCCGGTTGCGGTGCGCCCACGACAC 109272 28 100.0 32 ............................ ATCGGTTACTTGTACCCGGACGGCGGCACCGT 109332 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 109392 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGCGAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTTAAAATCAATAACTTACCAAGACACGAAAAAAGAGGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : GCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATAAAAGTTAAAGAATCGTGCGGCCTCGTATCTACGACAGCGGTAGTCGAAGTGCACAGGAAGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 501288-499487 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQT01000015.1 Pseudomonas aeruginosa strain PA_151345 NODE_1_length_850283_cov_31.0486, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 501287 29 100.0 33 ............................. GACGGTTGGCTCGACAATGTCGGCACTGCTCAG 501225 29 100.0 32 ............................. CCGGATGCGATCACGCAGGTATCGTCGTCAGG 501164 29 100.0 32 ............................. CTCGGCTCTTCCTGCATCAGGGCCGGGGGCGG 501103 29 100.0 32 ............................. ACGCCTGACAGGCAGGAGGACAGAATGAGCAA 501042 29 100.0 33 ............................. GCGTACAGGCTGCGTTTCGGATGCTCATGCCGC 500980 29 100.0 32 ............................. ACGAGTCTCGCATCACAGCTTCGGTGATCGCT 500919 29 100.0 32 ............................. ACCATCAAGCGCGGCGTGATCTCTGCGGCCCG 500858 29 100.0 32 ............................. TCGGACCTGCAGACGCAGAAAACCCGCAGCTG 500797 29 100.0 33 ............................. CTGGATACGACCCGCTCGAGGGTGGTGATCCGC 500735 29 100.0 32 ............................. GTGTAACTGTCCGGTAGGGTCTTCATCGCCAT 500674 29 100.0 32 ............................. AATCGGGGAAGAGTTCCGCGTACTTCTCTTCG 500613 29 100.0 32 ............................. CCCCCTGCAGTGCCGCCTTCCGAGCCAAGAAT 500552 29 100.0 32 ............................. CGGGGCTGGCGCGCCGATCATGCCGATGAACT 500491 29 100.0 32 ............................. GCGACAGATGCCCCTGCTCGTCCAGTTTGAGA 500430 29 100.0 32 ............................. GTGGATGGCGTAGCGGGTTGGATCGCTGCGTC 500369 29 100.0 32 ............................. GAGGTAGGTCATGAGTGAGCTTCAGCGATACA 500308 29 100.0 32 ............................. GGGGTTCGCAAGAACCGCGAGACGCCGCGCGA 500247 29 100.0 32 ............................. ACGGGCGGCTGCTGACGTTCATCGCCGGTGCG 500186 29 100.0 32 ............................. TTGGCCAGGCTTCTCCCCGCTGAACTCCAGCA 500125 29 100.0 32 ............................. CGCTTCACCATGATCGTAATGGACGACAGCGA 500064 29 100.0 32 ............................. CGGTTGATGGACTGCGACATCCTCGCGTTGCT 500003 29 100.0 32 ............................. GACGTCCCGAGGCAGTGCGTTTTCGCGGGTAC 499942 29 100.0 32 ............................. CGGTTGGGTACAGGCTCGACCGCATGTTGGCG 499881 29 100.0 32 ............................. CCGTTACCGCTGTATACCGAGGCGACCTTGCT 499820 29 100.0 32 ............................. TGATGGATCAGTCTCATTGACCAACTCGGCGC 499759 29 100.0 32 ............................. CCGGCGATAGAACTGCCGCTGCCCACACCCTG 499698 29 100.0 32 ............................. CAGATGATCAAGGACGGCGACCTGAAGCGCGC 499637 29 100.0 32 ............................. ATGCAGCCGGGCCGCTCCTCGAAGGGCGTTGC 499576 29 96.6 32 ..............T.............. GCACCGCGAAACGCGCCGACGCCTGGAAAGTC 499515 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.9 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTTCTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGTCGTAGTGATGGAAAACGTCCCGTCGCGCTTGCGTGGACGTCTGGCAATCTGGTTACTGGAGGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGAGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 510979-510461 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQT01000015.1 Pseudomonas aeruginosa strain PA_151345 NODE_1_length_850283_cov_31.0486, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 510978 29 100.0 32 ............................. AGGGCGGGGAGCGTGACCTCTGGTTCTTCGAG 510917 29 100.0 32 ............................. TCGTCGCCGCCGATCAGCACGCCGAAGATGCA 510856 29 100.0 33 ............................. GCTGGGTTGACGGTCGCACTGGCAGATTCTTCC 510794 29 100.0 32 ............................. CGTGGAAGGAAAAGGAAATGGGCGTGAATCCG 510733 29 100.0 32 ............................. GAGGAGATGCTGCCCCACGGCGAGGCCAACAT 510672 29 100.0 32 ............................. TACTGTCCGCGCTGGCGGACCTGCCCTTACCA 510611 29 93.1 32 ........T....A............... AACGCGGCGTGCGAACGCCCATCTTCCAGAAG 510550 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 510489 28 79.3 0 A..........A..C.....-..A....T | C [510480] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGATGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTTAAAACAATGGGATACGGTAAGGG # Right flank : GTCTACGCTCCTGCGGTTCGACCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTTCGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGTCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGCGCGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAACAGATTGTGAACGGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCAGGTCCATATCCCTCCTGCGGTCCTTCGCTTGCTAAACGGGGGTGAGCAGGCGTATCCCTCGCAGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 117696-117128 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQT01000004.1 Pseudomonas aeruginosa strain PA_151345 NODE_10_length_261290_cov_29.2826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 117695 28 100.0 32 ............................ ATCGTGCCGGACAGCAGCAGGATGCCTAGGAC 117635 28 100.0 32 ............................ GTCAGCGGGACCGTGGAATACCGCAGCGCCCG 117575 28 100.0 32 ............................ TCGATATCAGCCGAGCTGTACTCGGTGCGCTC 117515 28 100.0 32 ............................ TGCTCGCCAATGAAATCGGCCATCTCCGCACT 117455 28 100.0 32 ............................ AATGTCGCGGGTGACGTTGGTGTTGACCGCAT 117395 28 100.0 32 ............................ GCTGCGCAGATGGCCGAGCGGTTCGGCAAAGA 117335 28 100.0 32 ............................ ATCAGGACGTGCCAGATGACTCCACCGACTGA 117275 28 100.0 32 ............................ CGCTGTCCTCGTCGAATACCGGTAACGTCGCG 117215 28 100.0 32 ............................ GAGGAAAACGAGCGCTCCACCTTCAAGATCGA 117155 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTTGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCAGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGTCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGGCTCTGGCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGACAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 122031-122599 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQT01000006.1 Pseudomonas aeruginosa strain PA_151345 NODE_11_length_180310_cov_39.8102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 122031 28 100.0 32 ............................ TTCTGCCGCATGTAGTAGTTCGTCACAGCCTC 122091 28 100.0 32 ............................ AGCGAGATAAGCACCGCCTTCTGTGCGGGGCT 122151 28 100.0 32 ............................ TTGCGGATATAGCGATCATTGGTGCCGAAAGC 122211 28 100.0 32 ............................ AGGTCGAGCAGCAGCTCGTGGAGATACTCCGC 122271 28 100.0 32 ............................ TCAACTCGGGATGGGAGCCGACGGAGCGGTAA 122331 28 100.0 32 ............................ AGTACGGGCTGAAGGATCGCGCCGAGCGTGGC 122391 28 100.0 32 ............................ ACGATATGGACAAGCAGTGCCGCGATGACGTA 122451 28 100.0 32 ............................ GCGTGCGACACTGCGATATGCAGCCGAATTGT 122511 28 100.0 32 ............................ AGGAACGTCGCCGGGCGGCTCATGACGTTGTA 122571 28 82.1 0 ......................G.CTTC | C [122591] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCCAACTCGCAGGCCAACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCACCCGGCCAGTTGTTCGAAAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGTCTGCTCGACGGAAACCCTCGCCTATATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGAGGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGCGAAGCTCACCGCCCGTCCCGCCCATCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTGAGAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : CCACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37702-38509 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQT01000036.1 Pseudomonas aeruginosa strain PA_151345 NODE_31_length_47764_cov_29.3819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37702 28 100.0 32 ............................ ACCCGCTGAGCGAGCGATTCTCCACCCTTGCA 37762 28 100.0 32 ............................ TGGACAATCGGGAACGGGCCCCAGCCGTCCCG 37822 28 100.0 32 ............................ AATCATCCCGGCGCCGGCGTCGGTCGCGAGCA 37882 28 100.0 32 ............................ GTTGCGCGGCGACCCTGACCATTTCCGCAACA 37942 28 100.0 32 ............................ ATTACCCACCGGAATCCACTTCTCTTCCGGGT 38002 28 100.0 32 ............................ GTGACCTGGCGCGCAGAGGCCCGCAGTTGCGC 38062 28 100.0 32 ............................ GCTGGAACCTCACCTGAGACCTTGTCGAGCAC 38122 28 100.0 32 ............................ TGTCCAAGGGAGCCCCCGAGGGGAGAGCCAGC 38182 28 100.0 32 ............................ GTTGTGCGCGCCGTTGGACCGGCGGGCGCTCG 38242 28 100.0 32 ............................ TTGCGGAGTAAATCGACTGGTGCGCGCTTCAT 38302 28 100.0 32 ............................ TTCATCCTGCAGATCCTGCCGCACGGCCAGAG 38362 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCTTTTTAG 38422 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38482 28 78.6 0 T.........AC.....TC..C...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTA # Right flank : ACGGCCAGCAGACCTGAAGTATCGATTGATGTGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47666-47038 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQT01000036.1 Pseudomonas aeruginosa strain PA_151345 NODE_31_length_47764_cov_29.3819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47665 28 100.0 32 ............................ GTCTTGCCGTTGAGGCGCGCCAGTTCGTCGAG 47605 28 100.0 32 ............................ AGCGTCGGGTGGAATGCTGCGTATCGCCTATC 47545 28 100.0 32 ............................ ATCAGGACGTGCCAGATGACTCCACCGACTGA 47485 28 100.0 32 ............................ AATGCGGTCAGACCATTCACGCCGCACTTGCT 47425 28 100.0 32 ............................ ATGACCAGCCGGTAGCGCTCTGTGACGGACTG 47365 28 100.0 32 ............................ TGCCGACACCCCCCTGGAGTTCGCCGAGGGCG 47305 28 100.0 32 ............................ ATTCCGGTAGAGGCTCCGGTAATGCGGCTATT 47245 28 100.0 32 ............................ GTGGACAACGAAAACGAAACCCTGGTCGCGCT 47185 28 100.0 32 ............................ GGACAGGCGGGGGGCTATGTCGATAAACACAA 47125 28 100.0 32 ............................ TGTATGACGACAGCGAGACAGGACGCTGCCGC 47065 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGGCTCTGGCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAGCCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCCAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCGGTATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //