Array 1 461139-462691 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWF01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5242 NODE_3_length_725697_cov_76.599005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461139 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461200 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461261 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461322 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461383 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461444 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461505 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461566 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461627 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461688 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461749 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461810 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461871 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461932 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 461993 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 462054 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 462115 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 462176 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462237 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462298 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462359 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462420 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462481 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462542 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462603 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462664 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 479006-479523 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWF01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5242 NODE_3_length_725697_cov_76.599005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479006 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 479067 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 479128 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 479189 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 479250 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479311 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479372 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479433 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479494 29 93.1 0 ............TC............... | A [479521] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //