Array 1 455286-456778 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLI01000001.1 Salmonella sp. S075_02071 NODE_1_length_635675_cov_198.883, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455286 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455347 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455408 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455469 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455530 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455591 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455652 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455713 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455774 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455835 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 455896 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455957 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 456018 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456079 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456140 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456201 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456263 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456324 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456385 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456446 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456507 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456568 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456629 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456690 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456751 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472910-474874 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLI01000001.1 Salmonella sp. S075_02071 NODE_1_length_635675_cov_198.883, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 472910 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472971 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473032 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473093 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473154 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473215 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473276 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473338 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473399 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473460 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473521 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473582 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473643 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473704 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473765 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473826 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473887 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473948 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 474009 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 474070 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474131 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474193 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 474254 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [474296] 474296 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474357 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474418 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474479 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474540 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474601 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474662 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474723 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474784 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474845 29 96.6 0 A............................ | A [474871] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //