Array 1 66315-66498 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014142.1 Thermus parvatiensis strain RL plasmid pTP143, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 66315 36 100.0 39 .................................... TCCTCTGGGACTTCAGCCGGCACCTTCCCCTGGACCCTC 66390 36 100.0 37 .................................... GTTCGGGCCTCTGCCGTTTTGAGGAGAGGAGGAGGAG 66463 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 100.0 38 CTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Left flank : TCCCCCGTCCCCAGGTAGGGGTAGTGCCACAGCCTCAGGGGAAGCCGCTTCCCCAGGGCCGCCGCCCTCGGAAGGACCTCCACGGGGTCCAGGAGCCTCCGGCCCCTGAGCAACTCCCCGTAGCGCCGGGCCGCCCGGGCCACCCGGGCAAGCCGGGGGAGGCCCCCTTCGCCAGGCGGGCAAGCGCCTCCTCCCCCTGGCCGGAGGCCTGGGCGAGCAGGAGGAGGGTCCTCACCGGGCCCTCGAGGGCCGCGGCCAGCCCCTGGGGGTCCTTCGGGGCGAGGGCCTCCCGCACCGCCTGCACCAGCAGGCGGCGGGCCCGGTAGGGGGAGGCCACCAGGAGCCCCCCGTCCCTTAGGAGCTCCCGGGCCAGCCCGGCCAGGGTGCGGTAGGGAACCCCCAGCCTGCGGGCCACCGCCCGGTTGGGGGTGACGTGTATCAGTCCTGGGTCCTCGGCGCGCACACCTTACCTCCTTTCTTCGCTATTTTCGCCTGCCTTC # Right flank : CGGCCCAGCGCCCAGGCGAAAACCCCTTGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACAGGGGTTGACCAAGGGGAGGTCCTGAGGGGGGCCGGGGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACGGTAAGCGGTGTACGTCTTCTGTGCCTCCTGGGGAGGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACGAGCCTTCCCTCCTCGTCCGTGCGGGGCCAGAGGGTGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACCGGACTGCCTGGAGGGTGTTCACGGGCCGAAAGTAGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACCTCGGCTCTCTCCCGGGAGAGCACACCCCCTTTGGGGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAACCCCCCTCGGGCTTGGCCTCCTCCTCCAGGGAGCGGAGGTTTCAATCCTCACCGGCCCTTTCGGGCCGGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 67227-66526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014142.1 Thermus parvatiensis strain RL plasmid pTP143, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 67226 37 100.0 37 ..................................... CCCATGACTGAGGTTGATGCCCTCTTGCGGGCGCTTA 67152 37 100.0 40 ..................................... CTGGAAGAGACCTGCTGGGCGCAGTCCATGCTCGTCTGGG 67075 37 100.0 37 ..................................... CTCAAGAAGGACGCGCCCCTCGCGGTTTAGCTCCCTG 67001 37 100.0 37 ..................................... CTCCGCTCCCTGGAGGAGGAGGCCAAGCCCGAGGGGG 66927 37 100.0 36 ..................................... CCCAAAGGGGGTGTGCTCTCCCGGGAGAGAGCCGAG 66854 37 100.0 35 ..................................... TACTTTCGGCCCGTGAACACCCTCCAGGCAGTCCG 66782 37 100.0 36 ..................................... ACCCTCTGGCCCCGCACGGACGAGGAGGGAAGGCTC 66709 37 100.0 36 ..................................... CTCCCCAGGAGGCACAGAAGACGTACACCGCTTACC 66636 37 100.0 37 ..................................... CCCGGCCCCCCTCAGGACCTCCCCTTGGTCAACCCCT 66562 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 100.0 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : AGCTTTGCGGAAGGCGGCGAGGTGGTAGGGGTTGACCAGGGCCACGGGGAGGCCCTTTTCGGCCAGGAGGCGGAGGAGGGGGAGGTGGTAGGGGCCCGTGGGCTCCAGGGCGACCCAGGCGGGGTTGTGGTGGGCGAGGGCGGCGAGGAGGGCTTGACGGCCTTCGGGGGTGTTGGGGAAGCGGAGGCGGGTGGGTTTGGGGGAGTTGGAGACCAGGGCCAGGTCCAGGTGGGGTTTGCTGACGTCAATACCGGCGAAGGTCATGGGCTCTCTCCTTTTTGGTAACCTGAGGGAGGTGGCCACCCGACCCTGTGGGCCTTCCATGTGGATGCGGTCTTTCACGACCGGGATACTGTGCGGCGGGGAGGCCGGGGCGGGTGGCTACCCATCAATCCCGCGGGCGTGGGTGCCCGGCAACCAGGGCGGTAGGGCCTCCCTCAGGGGGCAAGATACATGAAACAAGGCCATCCCGCTTGAGGCATACTGGGCGACCAGCTGGA # Right flank : AAGGGGTTTTCGCCTGGGCGCTGGGCCGTTACATCCAAGCTTCACAGCTTGGCTACGTTGCAGCTCCTCCTCCTCTCCTCAAAACGGCAGAGGCCCGAACGTTACATCCAAGCTTCACAGCTTGGCTACGTTGCAGGAGGGTCCAGGGGAAGGTGCCGGCTGAAGTCCCAGAGGAGTTACATCCAAGCTTCACAGCTTGGCTACGTTGCAGGAAGGCAGGCGAAAATAGCGAAGAAAGGAGGTAAGGTGTGCGCGCCGAGGACCCAGGACTGATACACGTCACCCCCAACCGGGCGGTGGCCCGCAGGCTGGGGGTTCCCTACCGCACCCTGGCCGGGCTGGCCCGGGAGCTCCTAAGGGACGGGGGGCTCCTGGTGGCCTCCCCCTACCGGGCCCGCCGCCTGCTGGTGCAGGCGGTGCGGGAGGCCCTCGCCCCGAAGGACCCCCAGGGGCTGGCCGCGGCCCTCGAGGGCCCGGTGAGGACCCTCCTCCTGCTCGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA //