Array 1 24883-23522 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGI01000018.1 Lactobacillus helveticus strain IMAU30120 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 24882 32 100.0 35 ................................ AATTCATTACTGGCACTACTCCATCTACTACTCAA 24815 32 100.0 34 ................................ AATAAATCTATCACGTACTGCTAAACGTAAACTT 24749 32 100.0 34 ................................ TTTCATGGCTCCAGTTAAACCGTTAACTGCACTA 24683 32 100.0 35 ................................ ACATGAGTAGTAGATATATCTGGTGAGGGATGCAC 24616 32 100.0 34 ................................ TGATGGCAAGACCCACATTGACAATGCTGATCAA 24550 32 100.0 34 ................................ TCAAAATTATTGTAAAAAAGACCGGCAAAACAAT 24484 32 100.0 34 ................................ TTACTGCGATGCCATAAATATTGCCTCCGTTGGC 24418 32 100.0 36 ................................ AGCTAGAAGCTCATCGGTTGTCTCATAGGCCATTGA 24350 32 100.0 34 ................................ AAAGACATAATTTGAAAGTCGTCTTTTTTGGTTA 24284 32 100.0 35 ................................ AAATGCACCACCACCAATATTAGTTGGAGTAACTG 24217 32 100.0 35 ................................ TATCACAGAAAGCAACACTGCTACTTGGCATTCAA 24150 32 100.0 34 ................................ TTTGACCGACTGCATACGCATCGGCTGCCGAATC 24084 32 100.0 34 ................................ AAAAGGTGAACCACATCAAGAATCCAAACAAGAT 24018 32 100.0 34 ................................ ATAAAGGTCTTTAAGACCAGTACCATTAGCAAAG 23952 32 100.0 34 ................................ TTGGTTACGACTCTGACAAAAGCAAGAAATCAGA 23886 32 100.0 34 ................................ CTTTCGCTTTGCAACCAGGCATGGAGGTTTTTTA 23820 32 100.0 35 ................................ TATTGAAAGTCTGACTAAGCAGCAACAAATTCAAG 23753 32 100.0 36 ................................ TTACAGATTCCTGCTTCGACTGAAAGTGTTGCTTTC 23685 32 100.0 34 ................................ TTGCATGTTATGTTTGATCATAAACAATGCAATG 23619 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 23553 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 100.0 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4231-3775 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGI01000083.1 Lactobacillus helveticus strain IMAU30120 Scaffold83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4230 29 96.6 32 ............................T GTAAGCCTGTTATCATAAGTCATTGATAGTGA 4169 29 100.0 32 ............................. CACAATCCCTGAGTCTTTACCAGCTTGCAAGG 4108 29 96.6 32 ............................T AGCTGTATTTGTCTTTTGCTTGAAGCGTGGAT 4047 29 100.0 32 ............................. ATGGCATTAAATAGCTCGTCAAAACTATCTGC 3986 29 100.0 32 ............................. AACTGGTGTGTTTTTGAAATGCTTAATCTTTT 3925 29 100.0 32 ............................. TGGTATAATTAGTTTGTAGGTAAATTCCTACA 3864 29 86.2 32 ...............A..........TTT CGCGCTCAATGTGTTCAAGTGCGTCATTGGCA 3803 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : ATTTAAGGAATCATTCATCCTTACACAAACTATTTTACAGTCTCATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGGTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTAC # Right flank : ATTTTTGCTATAAAACTGCTGCAAAAATATTGTGTGGAAAATGAAATCTATTTTGATACTTGGTATAAATTTGCAAAATGTTTTGGAATACCTAAAGAGTGTCACTACTTACTAGAATTGATTGCATGAGGTAAGAACCATGAGTAGGCTAATACGCCGCAGATCTATCACAAAATCTATTAAGGCTGAAACAACCGCAAAATATAAAAGGGAATTAAAAAGAAAATTTTGCCTGGATACGGTAAAAAAGGAGCTGGGGTTGTAAAAGATCCTAAAAGAAGTATACGAAATGCTATTTACAATAGGACAACTTTAGATACAAGAAAAATTAGCAAATCTAAAAAGAAAGATTCAACCGATGATAATAAGCTAGGTTGTGGGTGTGCTACAGCTCTAGTTTTCTTCGGTGCTTTTGTTGGTCAAATGATTGGTGGCAATGTAGGTGGAGTAATTGGTGTAGTTCTTATGCTTATAATTGCTATTTGGGGAATGATATAGGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //