Array 1 187044-185368 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPVE01000004.1 Trueperella pyogenes strain SH01 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 187043 29 100.0 32 ............................. CCCAACTGACATCGGATCCGGACGGTAAAGAG 186982 29 96.6 32 ......................C...... GGGCTGGTCTCCACCGGCCACGTAGGCGTCGA 186921 29 96.6 32 ............................G ACCGCAAGAGAAACATCCAGGCTTGAAATAGA 186860 29 100.0 32 ............................. TCCACGCCGAGCACCCAAGCTGGGAAATCCGC 186799 29 100.0 32 ............................. GATACGATGTGACGGTGTGGGTGGTGGACACA 186738 29 96.6 32 ............................T TTTGGTTGCCTTGCATGAGTGCATCATGCATA 186677 29 100.0 32 ............................. TGTGCATCCACTAGGCGCCGCGCCGTAGCCTC 186616 29 100.0 32 ............................. CGTTAACGGCACATCCGATACCACCGTGACAT 186555 29 96.6 32 ............................G TTTCTGCGAGTTCCCGCCCCGAACACAAGAGT 186494 29 96.6 32 ............................G CAGACAGGGCACGCGCCTCGGTGCGTTACACA 186433 29 96.6 32 ............................G GATTTCGCGGCTAATGCCGGAGGGGGTCACTA 186372 29 100.0 32 ............................. CGGCTAGGCAGCTGACCAAAAACGTCCAGGAA 186311 29 100.0 32 ............................. CCACAGCTTACTAATCACGTTCTCGTGTACTG 186250 29 100.0 32 ............................. AAGGCGACCGGGTTTGTGGTCCCGGAAGGCGA 186189 29 100.0 32 ............................. ATTCCACCGACCCTCGCGTTAAGCCTACCACG 186128 29 93.1 32 .....................G......G TGGGCAGACACCAGCATTTCTCGATAGCATGG 186067 29 100.0 32 ............................. GGGTACGATTTCCTCGGATATGGCGGAAATTG 186006 29 96.6 32 ...........................T. CAACAACCCTTCGATTACAGTGAAAGCGATGG 185945 29 100.0 32 ............................. GGGTACGATTTCCTCGGATATGGCGGAAATTG 185884 29 96.6 32 ...........................T. CAACAACCCTTCGATTACAGTGAAAGCGATGG 185823 29 100.0 32 ............................. GGGTACGATTTCCTCGGATATGGCGGAAATTG 185762 29 96.6 32 ...........................T. CAACAACCCTTCGATTACAGTGAAAGCGATGG 185701 29 100.0 32 ............................. GGGTACGATTTCCTCGGATATGGCGGAAATTG 185640 29 96.6 32 ...........................T. CAACAACCCTTCGATTACAGTGAAAGCGATGG 185579 29 96.6 32 ............................G GCTGACCAGAGCACCGATGATTATGTGGAACT 185518 29 100.0 32 ............................. AAAGTGGGAACGTGTCCTTCATGGTGGGGCTA 185457 29 96.6 31 ............................G GGTGGTAAATCGTTCAGTCCCGGGATGGGGA 185397 29 93.1 0 ..........................T.A | C [185372] ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.0 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : GTGGCGCGCCCATGTGGTCCCCGCGCAGGCGGGGATGAGCCCTCGCTTCCGACATGCTCTCGCCCCGTGCACGGGTGGTCCCCGCGCAGGCGGGGATGAGCCCCTGCCAACGCAGTCGTCTGAAACCATTATCGAGTGGTCCCCGCGCAGGCGGGGATGAGCCGGGCACGATCCACCTGCGCAGAGCTAAGAAGGCGTGGTCCCCGCGCAGGCGGGGATGAGCCCACAAAACCCCCGACACGAGCCGCGCCCATGCAGTGGTCCCCGCGCAGGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATTGTCAGGTGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTGACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGTC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189902-187258 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPVE01000004.1 Trueperella pyogenes strain SH01 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189901 29 96.6 32 ............................G TCTCCCTAGTCACTTTCCCCGCATATCAGTCC 189840 29 100.0 32 ............................. CTCGTGCCCAATAAGCAATACGACGTCACCGT 189779 29 100.0 32 ............................. GATCCCCGCGGCCGCGAGCGCGGCGCCTCCTA 189718 29 96.6 32 ............................T AAAGTCCTTCGCCTCCACCACGTGGGAATCGA 189657 29 100.0 32 ............................. TTCTGCCGCAGAAACTTCTATATCCACACTGA 189596 29 96.6 32 ............................G CAGCGCCAAGAAATGAACAGCGCCGCCCGCGA 189535 29 96.6 32 ............................G CCCCGGCCAAAAGGTCAGAAAGGACCACGACA 189474 29 100.0 32 ............................. ATCATCACTGCAACAGTAAGTCCAACATAGAA 189413 29 96.6 32 ............................G GTCATACTCCGGCACGCCGGCGTCCATGCATA 189352 29 100.0 32 ............................. GGTAAACGCGATTGGCCTTTAGACGATGTCGC 189291 29 96.6 32 ............................G GATTTCGGCGCGTGTAGAGACAGATTCTCTCC 189230 29 96.6 32 ............................G GTCATACTCCGGCACGCCGGCGTCCATGCATA 189169 29 100.0 32 ............................. GGTAAACGCGATTGGCCTTTAGACGATGTCGC 189108 29 96.6 32 ............................G TCGGGAGGCACGCAGTGTGTCCCCCGACTTAG 189047 29 100.0 32 ............................. ACGATGGGAGGGATCTGGGTGCGTGAATCTTG 188986 29 96.6 32 ............................G TCTTGGACCGCGTAAATGATGCCCGCGTAAGT 188925 29 100.0 32 ............................. TCGCCGGATACTCACCCAACACGCTACGCTCC 188864 29 96.6 32 ............................T CACCGAAAGCGGCGAATACGCCACCGGGGGAC 188803 29 96.6 32 ............................T GACCTCCACACGTCTCACAGGAGCTGCTCTAT 188742 29 96.6 32 ............................G TACCCGGCCTTTCTGTGTCGTCCTGAATGTGG 188681 29 96.6 32 ............................T TATGGACGCTCTGGGAATGATGAAAGACGGCG 188620 29 100.0 32 ............................. CCGGCGCGGGCGTGAGCTCCCTTGCTATGCTC 188559 29 96.6 32 ............................G CTCATCATTCCGCGCGCCCCTGAACTTGGTGG 188498 29 100.0 32 ............................. CGGCCGTAACCGCTACGACTACAACGGTCACG 188437 29 96.6 32 ............................G CATGTTCAGTCATTTTTCCTCCTGATTTGGTG 188376 29 100.0 32 ............................. GATGTCATATGGGAGCGCGGGGCGGGCACGCA 188315 29 96.6 32 ............................G AATACGTGAAGATCCTGGTGGAGCATATTAAT 188254 29 96.6 32 ............................G CCAGCCAGTGAAGAGCGGATAGGACGCTCCGA 188193 29 96.6 32 ............................G TTTTCTGGAATGTTGCGATTCACCGGATTTAG 188132 29 100.0 23 ............................. GAAGCAGTTCCGGCGCGAAATGC Deletion [188081] 188080 29 86.2 32 .CAAN........................ TCGCCGCACTCCAAGGCGTCCGCCTCGCCGTC C [188076] 188018 29 100.0 32 ............................. CTGCTTCCACCCTGCGGCCGCAACCTTGATCA 187957 29 100.0 32 ............................. TCGCTTCCGACATGCTCTCGCCCCGTGCACTG 187896 29 96.6 32 ............................G CTCGCCGCCCGATTCAAGAATGATGCGCTGCC 187835 29 100.0 32 ............................. CTCGGGGAGTAGCGCATGATCCCGCTCAATGT 187774 29 96.6 32 ............................T TTGGCGAAGACACACTAGCAGTCGCCAAGCAG 187713 29 100.0 32 ............................. AAGACGACATCGTATTTTTGCGGTACACCCTG 187652 29 100.0 32 ............................. CGCAACACCCCTTGTTTTTCACCGTCTGGGGC 187591 29 100.0 32 ............................. GCCGGGAGCTGCTCCGGCGGTGGCGCGCCCAT 187530 29 100.0 32 ............................. TCGCTTCCGACATGCTCTCGCCCCGTGCACGG 187469 29 100.0 32 ............................. CTGCCAACGCAGTCGTCTGAAACCATTATCGA 187408 29 96.6 32 ............................G GGCACGATCCACCTGCGCAGAGCTAAGAAGGC 187347 29 100.0 32 ............................. ACAAAACCCCCGACACGAGCCGCGCCCATGCA 187286 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 98.1 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCAGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTATCCAGATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCGTCAGGTAGGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAATGCTGGTCAGCAACA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTCCCCGCGCAGGCGGGGATGAGCCCCCCAACTGACATCGGATCCGGACGGTAAAGAGGTGGTCCCCGCGCAGGCGGGGACGAGCCCGGGCTGGTCTCCACCGGCCACGTAGGCGTCGAGTGGTCCCCGCGCAGGCGGGGATGAGCCGACCGCAAGAGAAACATCCAGGCTTGAAATAGAGTGGTCCCCGCGCAGGCGGGGATGAGCCCTCCACGCCGAGCACCCAAGCTGGGAAATCCGCGTGGTCCCCGCGCAGGCGGGGATGAGCCCGATACGATGTGAC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //