Array 1 1772-157 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPKS01000046.1 Micrococcus flavus strain BCRC 80069 Scaffold46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1771 29 100.0 32 ............................. CGGGGGAGACGTGCGTGAAATAGCCACGTTGC 1710 29 96.6 32 ............................A CGCGCGCGCATAGTGTCAAGTGGTTCACGAAC 1649 29 96.6 32 ............................G CTGGGCCGGCCACATTCCATCGAGCACGACCA 1588 29 100.0 32 ............................. GCGGTGCACACGCCGCGGATCAGACGGGCCGG 1527 29 96.6 32 ............................G AGTGCCGCCCATGCAGACCAAGCCCCTGTCCT 1466 29 96.6 32 ..........A.................. GGGTCGATCACGGCCACCGTGACGGTGCGTGG 1405 29 100.0 32 ............................. GATCAGCCACCAACCGAAGACCTTGGCGGCAA 1344 29 100.0 32 ............................. TGCCGGCTCAGCGCGAGGCCATGAAGCGCGCA 1283 29 100.0 32 ............................. GAGGTGCGGCCGACGGCCGCCGAGATCGTCCG 1222 29 100.0 32 ............................. AACCCCGGCCCCGGTGACGTCCTGATTCAGCG 1161 29 96.6 32 ...................A......... TGCAGCGCGTTGTCCAGCCGCAGGTGCAGGCG 1100 29 96.6 32 ............................G TTCCGGCGCCGGTCTGCATGGCCTGGATCATC 1039 29 96.6 32 ............................G ACGCGTGCGTGACGTTCGGCCCACGCAGGGCC 978 29 100.0 32 ............................. GGCGGCATCGGGTAGCCCTGCGTCAGGCTGTC 917 29 96.6 32 .........A................... GATCCGATGGTGACGCCCACGGCAGCCGCGCC 856 29 96.6 32 ............................G CGGTACGTCGCCACCACGGACGTGAACCGTCG 795 29 100.0 32 ............................. CGGTGGGCCCCCGGCATGGCCGCCGATGCGGT 734 29 96.6 32 ............................G GCACCGGACCCGTCGCAGCCGCTGCAGTACGC 673 29 96.6 32 ............................G GCCGCGAAGTTATGCGACGCCATGCCCGGGGT 612 29 100.0 32 ............................. GACGCGCCGACCCGCCGCGAGCAGGCGGCCGC 551 29 100.0 32 ............................. AGGGTGGGGGACAGGGCCCCCTGCGCGGTCGC 490 29 96.6 32 ............................G TCAGCGGGTGCATGAGGTGATCCTCTCGAGGT 429 29 100.0 32 ............................. CGCGACATGCTCGCGCTCGTCTACATGGCGAA 368 29 96.6 32 ............................G GGGTACGTGGACACGGCGGTGGGCGGCCGCGC 307 29 96.6 32 ............................T ACGTGGTGCCGGCCGCCGCCGGAGCGGCGCCC 246 29 96.6 32 ..A.......................... ACGGTGTGCGAGGACTCGTCGCCGTCCACGAG 185 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.0 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : | # Right flank : GCGCACCCAGCGCGGCCATAGAGGGACTGGTGCACGTGTAGGTGACAGCCATCTTCACGCCGCGTCTGCGGGCGTGTGGTCCATGATCAACTCGTACTCAACCGGCGTCAATCGGTCCAGGCGCACCTGCCGGCGGCGGCGGTGGTAGGTCCGCTCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48314-53656 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPKS01000013.1 Micrococcus flavus strain BCRC 80069 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 48314 29 96.6 32 ............................G TTCGCCTTGTCGACGCCGGCCGGGTAGTCGAA 48375 29 100.0 32 ............................. ATGTGCACGGTGTTGCCGGCGGACCCGTAGCA 48436 29 100.0 32 ............................. TCGCCAGGCTTGCGGCCGAGGGGGTCGTTGTG 48497 29 100.0 32 ............................. GTCACGGCCACGAGGCGGCCCCACCGGAACAC 48558 29 100.0 32 ............................. TCCTTGACCGCGTCACCGGCCTTATCCATGCC 48619 29 100.0 32 ............................. TCGTGCTCTCCGATCCGGACGATCATGGTCCG 48680 29 96.6 32 ............................G GTGACGGCCTCCAAGGCCCTGTTCGCGGACGC 48741 29 96.6 32 ............................G CTCACACCCTGCCCGGGCCCGTTCGAGGTGAC 48802 29 100.0 32 ............................. CGTCTCGTCCAGGTGTCGCCGCCGTCCATGGA 48863 29 100.0 32 ............................. GTGCAGATCACGAACTTCCGCACGGAGGACGC 48924 29 100.0 32 ............................. CGGAGTAGTCAACCCGCTTGAGGGTCCGCCAG 48985 29 100.0 32 ............................. CCCGGCGGCGTCGGGCACCTGTGGGTCAAGGC 49046 29 96.6 32 ............................G GTGTCCCACGGCTCCATCCGCTCCGCCAAGAC 49107 29 96.6 32 ............................G ATGTCCTTGACGGTCAGGCCCCACCAGGTCTC 49168 29 96.6 32 ............................T CCCCGTGCCAACCGATGGGAATGGAGAAACCG 49229 29 100.0 32 ............................. AGGATCCAGGGCAAGACCGTGGACCTCACCGC 49290 29 96.6 32 ............................G AAGCGAGCGCCGGTGGCGTCCCGGTAGCAGAT 49351 29 100.0 32 ............................. CCGTCCTGCTGCAGGACCAGCAGCCGGTCCCC 49412 29 96.6 32 ............................G TTGGCGCCGTCGTGGAACTCCACCTGGCACCT 49473 29 100.0 32 ............................. CATCCGCCCCCGAAGCACGGCTCCCCGTCAGC 49534 29 96.6 32 ....................A........ TGGAATCTGGTGCTCAAGGGCATCATCGAGGG 49595 29 100.0 32 ............................. CAGCGCTACACCCACTTCGACCACCCCGCGTT 49656 29 100.0 32 ............................. CGATCGCTCGACGCGTCCCGCTGGGCGATGAA 49717 29 96.6 32 ............................G GAGGGCATGACCCCGCAGGTCGACGTGTGGGA 49778 29 96.6 32 ............................G TTCGAGCCGAGCACCCGGAGACCGTTGTCGTA 49839 29 100.0 32 ............................. TACGTGGAGCGGGCCCGGTACCTGCTGGACCG 49900 29 96.6 32 ............................G TCCCGGACCATGCCGAGGACTGGCAGGATGAC 49961 29 100.0 32 ............................. CTGCCGTGGACGTCCGTGACCGGGAAGCCGTC 50022 29 100.0 32 ............................. TGGCAGATCGCCCGGCTCTGAACCGGGAGGTT 50083 29 100.0 32 ............................. CACCAGCGGGGAAAGTGCTCGACCCACTCGCC 50144 29 100.0 32 ............................. GCCGTATCCGTGAGCTCAAACGCCGGGAGATC 50205 29 96.6 32 ............................G AGCGGGCATGGAAGAACGCACGTCAGCGGGAC 50266 29 96.6 32 ............................G GCGTACCTCGGCGCGGACGGCGCCTGGCACGT 50327 29 100.0 32 ............................. TCGTCGATGACACCGTGGGCGCCGGAGACGAG 50388 29 96.6 32 ............................G GAGCTCGTCGACCGGCTCACCACCCACACCCC 50449 29 96.6 32 ............................G AACGTGGGCGGGAGTGGGTTCAAGACGCTGGC 50510 29 100.0 32 ............................. TTGATGAACTGCCGTCCACCGGCTTCCCAGTC 50571 29 100.0 32 ............................. CCCTCCGTGCGAGTGCGCCGTAGGTCATCCTC 50632 29 96.6 32 ............................G CGCTGGGCCACGTGCCACTCGGCCGCGTCGAT 50693 29 100.0 32 ............................. ATCTCGGTCAACGTGCCGGGCGTGGACTTCTT 50754 29 96.6 32 ............................G GCGGTGACGTAGTGCGGCCTCCAGTCGCGGAG 50815 29 96.6 32 ............................T ACCGGCCCGGGCAGACCAACGCCCGCGGCACC 50876 29 96.6 32 ............................G TGGGCCGTACGTGCCAGCGACGGTGAGATGTA 50937 29 100.0 32 ............................. AAGTGGTGGACCGTCCGCGCCGTGAGCGACCG 50998 29 96.6 32 ............................G GCCCGGCGCGAGCGGAGCCGAGACAACATCGC 51059 29 100.0 32 ............................. ATACACGCCTATGGGGGAGGGGGCAACCCCCG 51120 29 96.6 32 ............................G GAACTCCCACATGCGCCACCAGGAGAACCGCC 51181 29 96.6 32 ............................G CACGCCCTCACCGGCGCCTTTGATGGCCGCAT 51242 29 96.6 32 ............................G CCCTGGTGGCTGAGGCCCGCGTGCGCTCCACC 51303 29 96.6 32 ............................G CCACGACACTTGCCCCGTGAACCATAGAGCGC 51364 29 100.0 32 ............................. AGGGCGCGGCGCAGCTCCGGCCCCGCGTCCAC 51425 29 96.6 32 ............................G CATGAGCACCGAGAACGTGGAAGTCCCCAAGC 51486 29 100.0 32 ............................. AACGGCGGGGCGCCGGTGGCGATGCTCGGCTC 51547 29 96.6 32 ............................G GGCCTGTGACCATGAGCGTGGACGAGCTGACC 51608 29 100.0 32 ............................. GCGCGGCGGGCGAGCCCGCTGCTGTCGGTGAG 51669 29 100.0 32 ............................. CAGAACACGTTCATCGGCGGGCGCTGGCACCT 51730 29 100.0 32 ............................. ACCCGCCAGTCGTGGCCGTTCGACCGGACGGA 51791 29 96.6 32 ............................G GTGGAGGGACACGGTCACGTCCGCCTTGATAT 51852 29 100.0 32 ............................. CACGATGACCACCCAGACCCGCCCCCAGACGA 51913 29 93.1 32 .........................A..G TGCTGCTGATCAACACCCCGCCCGGTGACCCG 51974 29 96.6 33 ............................G ACCTCGCCCTGCTTGGTGATGCGGTAGTGCCCG 52036 29 96.6 32 ........T.................... GTCCCCCGCGGCCGCGGCCCGGCTGCCCGCGA 52097 29 96.6 32 ............................G TACCGGACGACCGGGACGGTGACCCTGCGGGG 52158 29 100.0 32 ............................. TCCGTGGCCGCACGACTGGGAGAGGTGGGGGC 52219 29 96.6 32 ............................G CCGTCACCTTCCAGGCCGGCCTGCCGCTAGGC 52280 29 100.0 32 ............................. AGATAGGAGCCCTGAGATGGCCAAGGCTGACG 52341 29 100.0 32 ............................. AGAAGTTCCACTACGGCCTGGACATGGCCGAC 52402 29 96.6 32 ............................T GCCGTGTCGTAGAGGGTGAAAAGCTCACTGTC 52463 29 96.6 32 ............................G CGGCCCCGCTCCGAGGTCGCCATGCAGACCGC 52524 29 96.6 32 ............................G GGCTTGCCGGATCCCTCCCACCTGCAGCCGAT 52585 29 100.0 32 ............................. TCACGAACGTAGGGGACGACGAGGGTGCAGGC 52646 29 96.6 32 ............................T ACCGCCGGGCGTCCCGGCTGGAGATGTTCCGA 52707 29 96.6 32 ............................G GTGCGGGTCTGCTCGCGGCCGGACCCGTCCGT 52768 29 100.0 32 ............................. ACCACCGCCCGCGACCGCGCCAGAGCCCTAGT 52829 29 100.0 32 ............................. CACGGGGTCACCGTCCTCAACGCCCCCGGGAC 52890 29 96.6 32 ............................A CACTCAAGGGACCGGGTAGTACCGGCAGCTGG 52951 29 96.6 32 ............................T CGGGGCTCGCCGTTGGCGTGCTCCCCGCCGCG 53012 29 96.6 32 ............................G GTGCGGACCGTGTAGGCGTTGAAGCCGGGGTC 53073 29 100.0 32 ............................. GGCTCCACGTTCATGGACAAGAAGACCGGGAC 53134 29 96.6 32 ............................T TGCAGCGCGACCACGCGGGCGGTCACCCGGGC 53195 29 100.0 38 ............................. CCCCCCCCCCACACGAGGTTCGTGTAGGGGTCGGACAG 53262 29 96.6 32 ............................G GCGGGCGAGAACCTGGCCCGCCTCATGGGGAG 53323 29 96.6 32 ............................G CCGCCCGTCACCGCGGACACGATGCCCGCCCA 53384 29 96.6 32 ............................G GCCGCAGCAGCAGCCGAGGCCGCCGACGCCGA 53445 29 96.6 32 ............................G TCGCTGGGGCCTGCCCGCCCGGCCTCGCGGAC 53506 29 96.6 32 ............................G TGGGGGTGCGCGGCGAGGTCGAAGTCGTCGGG 53567 29 96.6 32 ............................G CCGGTGCCGCCACGGGACAACTCGAAGCCAGT 53628 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 88 29 98.1 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : TCCCTGTGGAGCGGGCGAGGCCAGCAGACCGTCCCCGGCGGCGTGAGCTACGGAGAGCGCGCATGATGGTCCTGGTCCTCACGGCGGCGCCTGCCGGCCTGCGCGGAGAGCTGACTCGCTGGCTGATGGAGATCGACGCGGGCGTGTTCGTGGGGAACCCGTCGGCGCGAATCCGTGACGAACTCTGGGCGAAGACGAAGCAGGACGTCAGGGAGGGGCGTGCCCTGCTCGTCTACACGGCAGCGACAGAACAGAGAATGCGCGTCGAGACGCACCGGCATCATTGGCAGCCCGTCGACGTGGAAGGACTGACCCTGATGCGGCGCCCGCTTCCGGAAGGATCCCGGCAGGATGGCCCGCAACGACGTACTGGATGGAGCGCTGCGCGGATGCGGCAACGCTCGTTGAGGCCGTCGTGGCGGCGCCAGCAAGACGGCCAAAGTGAATGAAACGCACGCCGAGGCGTGCGGCTAGGCTTGGAACCGGGCCAATTTTCAAGT # Right flank : AGCGGCGAACACCACGGGCCGTTCCCCACC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //