Array 1 4628-5653 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJNF01000003.1 Streptococcus salivarius strain BCC42 D8867_contig003, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      4628	    36	 100.0	    30	....................................	GCTACCACGAACCAAAGCAAGACTAATCGA	
      4694	    36	 100.0	    30	....................................	CAACAAGGTTGAGTTGAAAGCCGAAAATGA	
      4760	    36	 100.0	    30	....................................	TTAACAATGAAAAAACTATTTAGCTGGCTA	
      4826	    36	 100.0	    30	....................................	CTTGCCAGTTGTTATTGAACCAATCTCTTA	
      4892	    36	 100.0	    30	....................................	GAACGGTATGCGTTCTATCGCTCGAAGGTG	
      4958	    36	 100.0	    30	....................................	TACTGGTCTTCAACCCATTGCGCACTGTCA	
      5024	    36	 100.0	    30	....................................	TCAGAGACAAGAATGGCAAAGAAATCTTTG	
      5090	    36	 100.0	    30	....................................	CGTCAGAACGTATCTGTCCATAATGGATGC	
      5156	    36	 100.0	    30	....................................	AGAAAATCAATGATCAATAATGTCGAAGAA	
      5222	    36	 100.0	    30	....................................	GCATCAAACCAATTGATGGTGTACCAGCTC	
      5288	    36	 100.0	    30	....................................	CCATTGACCCACCGAACTATTTGGGCACAG	
      5354	    36	 100.0	    30	....................................	AGACACACGTGTGTCAATTGTTTCATTGTC	
      5420	    36	 100.0	    30	....................................	CAAAAAACGCACCAGACCCCGTAGAGCTGC	
      5486	    36	 100.0	    30	....................................	CGGTCTAGGTGCTGAAATCGTGGCAGTCTA	
      5552	    36	 100.0	    30	....................................	TGAACTAATTAAGACGATTGGAGAACACAA	
      5618	    36	  80.6	     0	............CC...............T..CCCT	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  98.8	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   AAGAGAATTTTGGTGTTCGTCAATAGTTTGTCGTATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGAAAGATTAAAGGTATTCAACAATTTATTTTGGATAAGGATTACATTTTGATGCCTTACAATAACTAGTAATTTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTACATGAAGTTGAGTGGAAGAATCATTTTGTTAGAGAGTAGGTTATAAGCTATCTGATAGGTGAGAAGGTAAGTTGATTGGAAAAAGATTTCTAAAATTTTTTCGATATAGCGACAGCTCTATTTGTTAAAACGTTGTTATATAAGGCTTTTTAAGGTATAATAAACATAAAAATGGAATCATTTTGAAGCTGAAGTCAGGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAGAAAAATGACCTACGAG
# Right flank :  TCTCTTTGTAACGATTTTGGGTTGACTTCTCCTTAAACTCATCCTATCATAGAGGAGTCTAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGACTTTGGCCGTAGCATTAGGGCAGATTCTTTGCCTCTTGCCATGACGAAAGCATCTGTGTTTTTATCACATATTATTAAAAGGTATGGAGATAAGCCTTTACCAGAGCCGACTGCGGTTAGCAGTATTCCTAATGAGGAAGAACTCGTCGTTTTGATTCAAACAGAGCTTGATTAAGACTAAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAGGACGACTAAAATGCCTGCAAAAATTTGTAGCTGCGAGAAGGGTTCTCCTAAGACGACAACAGCAGCTAGAATTGAGATAATGGTCGAAATCCCAATAAAGGATGCTGTTC

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//