Array 1 6421-7794 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRA01000411.1 Streptococcus sp. GMD2S Contig_411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 6421 28 100.0 33 ............................ TACCACTGCTCTTGCGATATTCTTTGCCAATCT 6482 28 96.4 33 ............T............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 6543 28 96.4 33 A........................... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 6604 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 6665 28 96.4 33 ....................A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 6726 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 6787 28 92.9 33 A....................A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 6848 28 96.4 33 ..........................T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 6909 28 89.3 33 ............T.T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 6970 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 7031 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 7092 28 92.9 33 ..............T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 7153 28 100.0 33 ............................ CATGATTATGACTATCAATGACCATGAGGGTGA 7214 28 96.4 33 ............T............... TACGCAAGACGTTTCAAGTGCTGCAATCCTTAC 7275 28 100.0 33 ............................ TGATAGAAGCCGATTGGGTTTGACTGCTCCACT 7336 28 96.4 33 ............G............... TTAAGTTCACTTCTTAAAAAAGATGAAGAATTG 7397 28 100.0 33 ............................ CAGTATTTTTAGCAACTTTAGCTTATCAATGGA 7458 28 96.4 37 .....................A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 7523 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 7584 28 96.4 33 ............G............... TGTAGACACATCCACAAGCTGGACAATCCCTCT 7645 28 96.4 33 ............G............... TACAGATGCTTGTATTCGCTTTATGGAAGTTAT 7706 28 92.9 33 ............G.A............. CTGATTATCTAGCCCCATCTCATAGATGGCCCA 7767 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 23 28 95.0 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : TCCACCAATTTTTCCTTTGTAGCCATCAAGCAAGTTTTTCCCGCAGACGCGGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4340-15 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRA01000599.1 Streptococcus sp. GMD2S Contig_599, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4339 36 100.0 30 .................................... CCATTGTTGAGGACGAAGTGTTCAATCAAG 4273 36 100.0 30 .................................... TTCCACAACTGAGTAACCGATAAAAAAGCA 4207 36 100.0 30 .................................... AGTTCTTGACTGTGATATTTGCTCCTGAAC 4141 36 100.0 30 .................................... CTCGTTCCCATTAGATGTTTCAAACACCTT 4075 36 100.0 30 .................................... AACATTGATATTTCAACCTTTCTAAGCATT 4009 36 100.0 30 .................................... ATCACCCCTTTCATGGTGTAAAATAGGGTA 3943 36 100.0 30 .................................... CGCCCGCTGGGAAGAAGACCCACGCATCAT 3877 36 100.0 30 .................................... CCCAGTCATAATTATCCCAACCAAAAACTC 3811 36 100.0 30 .................................... CATTATCAAATAATCTTAGTCAGATTGAAC 3745 36 100.0 30 .................................... AACTTCGTGCTAAAGGTTACATCAAGGGTA 3679 36 100.0 30 .................................... CTGTTTCAGACGATGGAGATATTTCAACAG 3613 36 100.0 30 .................................... TTCTATTTCTATAATCATTATAACACAATT 3547 36 100.0 30 .................................... TAACAGGTTTACTTGATGGATTGGCGCTGG 3481 36 100.0 30 .................................... AAAGCCCCATCTTTACTCACCTCCTTTCTA 3415 36 100.0 29 .................................... AGAGTATCATACGAGCCTTGGGATCAAAA 3350 36 100.0 30 .................................... TAGCCCGTCACTTTATTATATCAAACGCAC 3284 36 100.0 30 .................................... CTTTTGCTAGCTTGTACGATATTTCACTAA 3218 36 100.0 30 .................................... CCATCATCAGAATAAGTAAAATCCTGAAAG 3152 36 100.0 29 .................................... ACTGAAAAAGCTGTCAAGCTTACTGCTCC 3087 36 100.0 30 .................................... GATAAGCTCATCCACATTGTTAAAACTTCC 3021 36 100.0 30 .................................... CTAAAGCATGGTACGGGGATAAGTTTTCTG 2955 36 100.0 30 .................................... AACGCATTAGATTTCTGGAAGATGAACTGT 2889 36 100.0 30 .................................... CATATTCCTATCATTTAGAAGTTAAACGTA 2823 36 100.0 30 .................................... GAGAACATCGTGGAGGAAGGAGAATAACAT 2757 36 100.0 30 .................................... TTAAGGGCGCTGGTATGACACCAGAGATAA 2691 36 100.0 30 .................................... AATGTGTCAACTCATTCACAAGCGGGATAC 2625 36 100.0 30 .................................... TGAAGGATGATGGCAAATGGTACTACCTAA 2559 36 100.0 30 .................................... GGTTTTTAAATTGTACTTTTCCATAAAGAC 2493 36 100.0 31 .................................... AAGCGATATAGATAATGCTGAGCAGATCAGG 2426 36 100.0 30 .................................... TTTTGGTAAAAAGCACTCTGAAGAAACAAA 2360 36 100.0 30 .................................... CTTTCCTATAATGTAAACCAACATTTAGGC 2294 36 100.0 30 .................................... ACCCTGACGGGTCTTATCCAAAAGAAGAAT 2228 36 100.0 30 .................................... AAATCAGCAGTCTAACAATTAAGTTTCTTA 2162 36 100.0 30 .................................... TGTTTCCATAAAATTCTCTTTGTTCTGGCC 2096 36 100.0 30 .................................... TACAACAAGACAAAGGACGTAGGGACATTG 2030 36 100.0 30 .................................... TAACACGAGAGTTAAATAATTGCTTTGGTT 1964 36 100.0 30 .................................... TGGTGACACTACAATCAGCAGATGGGTCAC 1898 36 100.0 30 .................................... GTCCTTGTGAAACAGCTCCATCAGCAGCTT 1832 36 100.0 30 .................................... ATAAAACCGTTACAATTCCATCTGCAATAA 1766 36 100.0 30 .................................... ATCGATGAAAGACTGGCTCAGCTTGCGTCT 1700 36 100.0 30 .................................... ATGACCGTTTTAATTGGGCGATGGACATTG 1634 36 100.0 30 .................................... TTGGTCCTCAATTGGCTGAACTGGAAATGC 1568 36 100.0 30 .................................... TAAATCCTGCGAAGCCTATAATCGACCTGC 1502 36 100.0 30 .................................... AGCCATGTTATTCATGCCATCCAAAGCCGA 1436 36 100.0 30 .................................... TTATCCATGATACTGAAGCGTTCCATCACG 1370 36 100.0 30 .................................... GCCACCACATCTATAAAAGATTTCGTTCCT 1304 36 100.0 30 .................................... GTAATTTTGTAAGTTTCTTATCCGGTCTTT 1238 36 100.0 30 .................................... ATCTTCGATTGTTCTCATTGCTCCATAAAC 1172 36 100.0 30 .................................... TTCAGAGCGACCGGACGGGTTGTATGGTCA 1106 36 100.0 30 .................................... AAATTAAGTTAGAGATAGGCAATGTACCTA 1040 36 100.0 30 .................................... CGGTCATACGTGAAGCATTGCCAAGATTGA 974 36 100.0 30 .................................... CTTTCAAAATTCCTAGGTTCTTCTCATACG 908 36 100.0 30 .................................... CAGGCGCCTATTACACTCATAACCATCAAG 842 36 100.0 30 .................................... TCCTTTCTTCTAAATTTGCTTTTTACATTT 776 36 100.0 30 .................................... AGAAAATTGGAAATTTAGATAAATTTTATG 710 36 100.0 30 .................................... TAGACCTCAACCAATCGCTGATTGAGACGC 644 36 100.0 30 .................................... CCTGTACCATGGTTATCCGTCGGATGATGT 578 36 100.0 30 .................................... AGTTGCTGATGTGTTTTTCATATCCAGCCA 512 36 100.0 30 .................................... TAAATCTAAAAATTAGAAAAACCACCAAGC 446 36 100.0 30 .................................... TAAAATATCGAGAAACCTGGTATTTCATGG 380 36 100.0 30 .................................... AAGATAGCCACAATAGCATCCCAAATGCTT 314 36 100.0 30 .................................... AGGTGATACAACAGGAATCTGAGGCGCTGG 248 36 100.0 30 .................................... TCAAAAGAGAGTCGCTCTTGGTACCAAGTA 182 36 100.0 30 .................................... TTATGTGGCAAGCGCTAACTACTACAGATA 116 36 100.0 30 .................................... CCGTGAAATTAGTAGTGTTCAAAGGTGCTA 50 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 66 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAATATGAAATGAAAAAAAAATTCTGTATTGGATCAATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : CATGCTTGTATTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //