Array 1 3222412-3220369 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN890520.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462413 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3222411 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 3222350 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 3222289 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 3222228 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 3222167 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 3222106 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 3222045 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 3221984 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 3221923 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 3221862 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 3221801 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 3221740 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 3221679 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 3221618 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 3221557 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 3221496 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 3221435 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 3221374 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 3221313 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 3221252 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 3221191 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 3221130 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 3221069 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 3221008 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 3220947 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 3220886 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 3220825 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 3220764 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 3220703 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 3220642 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 3220581 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 3220520 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3220459 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3220398 29 93.1 0 A...........T................ | A [3220371] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3240779-3238919 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN890520.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462413 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3240778 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 3240717 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 3240656 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 3240595 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 3240534 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 3240473 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 3240412 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 3240351 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 3240290 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 3240229 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 3240168 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 3240107 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 3240046 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 3239985 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 3239924 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 3239863 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 3239802 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 3239741 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 3239679 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 3239618 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 3239557 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 3239496 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 3239435 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 3239373 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 3239312 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 3239251 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 3239190 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 3239129 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 3239068 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 3239007 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 3238946 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //