Array 1 114769-115197 **** Predicted by CRISPRDetect 2.4 *** >NC_017294.1 Candidatus Arthromitus sp. SFB-mouse-Yit, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 114769 32 100.0 34 ................................ ATCAATATATAAATTTATATTTTTATAGCCATAG 114835 32 100.0 34 ................................ ATAAAAGAACTATCTAATTTATTAAAAAAATAAG 114901 32 100.0 34 ................................ ATTAAGTCCAAATTTTAAACTTATAAGATTTCCT 114967 32 100.0 34 ................................ CAGCCTGTTCGGCAAAGGCTAAATGACGTTATGA 115033 32 100.0 34 ................................ CTCAAGTTTAACAACACTATAATTGCGGTCATAT 115099 32 100.0 35 ................................ GTAACGTTGATATGATCGTGCTCTTACATCGATAT 115166 32 90.6 0 .............T................GG | ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.7 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : TACGTTATTGGATACGGATGATAAAGAAAAAGAAATAAACTTGATAAAATATTTGAATAAAGAAATGTTTAAAGAGCATCATCTTTATGATCATATAGTACCTATTTATAATACTCCTAATTTAGAAAGTGTTTTTGAAGAAATTGGTCATGTATTTAAGAATAAAGGCGAGGCAAGAAAAAGAGAGTATAAAGATTTATTGAAACCATATCCAACCCCTAAACTTGCTCGGAATTATTTAAAAGATTTATCGGGAAAATTTGAAAAGAGCAAAAACACTAATCTTAATCATGTTATTAATTTTCTCCTTAATATATAACCCTTAAATAATTGCGAAATATAAGCTTACATTAAATTTATAAGTGCTTCGCGAAGCTATATTAATACTTGATTGTAGTAGAATACTTGGTATTGCTATTCATAGATGAATTATGTAGAATATTAGTGTTCGCAAAAATAGTATGTCTATTTATGATTAGCAGCTGTTTTTAAATTTAACG # Right flank : GTGCCAGACATATAATAAAACCCCACTTGAAATTAATCAGGTGGGGTTTTAAAATCTCCGTCTAAGTTCTACGACCTTTCCGATTATGTGTATGGGTTTATCTGCAATGTCATTTTTATCGTAGTACATTGGTTCGTACTTTGAGTTTAATGATACGAGGCTTATACCGTCCTTGTGTTTTATTATTTTTTTACAAGTGGCTTCATCTCCATTAATGCAAACTATAGCTATATCCCCTGAACTAATGTCATTCTGTTTTTTAACTATCACAATGTCATTTTCATCCATTGTGGGAGACATCGAATCACCCTTGATTACGAGAGCAAAATACTATCCTTGAGATGCAAGTTTAGGTGATATCTCTTCCCATCCGATAATCTCCTCAATCGCCGATATGGGTATACCAGCTATAACAGTACCTAGTATGGGTATTTTAATAGCTTTATTGGATTGATCAGATCTGGAATCATTTATTATATCTCCTTTTTTGATTTAATTTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 116969-117262 **** Predicted by CRISPRDetect 2.4 *** >NC_017294.1 Candidatus Arthromitus sp. SFB-mouse-Yit, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 116969 32 100.0 33 ................................ ATCATCTATTTTTAAAACAACAACAGATCCCAT 117034 32 100.0 33 ................................ CACCGTGGTGTTTAATGCTTTTGCCATTGCTAT 117099 32 100.0 35 ................................ TTTTCAATATTATTATCCATATCTAAATTATAGTA 117166 32 100.0 33 ................................ AGTCCTTTCTTATTTGTGAATTATTTGATATAA 117231 32 93.8 0 .............................GT. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 98.8 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : CCATCTTATAGATATTCATCAAGAGTTTTAAATTTTATCGTAGGATTGATACAAAAAAATCCTAACAATATTAAAGAAGTCTTAAAGAATAAAATAAAAAAATAAGCTAACCCCAGGGGCAAAGGAATTCTTGGTTTAATTTATTAAATTAAACCTACTCCTATTTAGGAACCCAGCCTTATCCATCCCAAGTTAGCTTACATTTATATAATATGTACATATCGTGTATATTATTCATATACACTTACATTGTACAATAAGTAATTTATAAAATCAATATTTTGTAGGTAAAAATCTGTTTAACTAGGCTTATTTAAGCTGGTTATTTTACTCGGAAATATAAGTTTACATAGAATTTTTAGATGTTTTGCGAAGCTATATTAATACTCGATTGTAGTAGAATAATTGGTATTGCTATTCATAGATGAATTATGTAGAATATTAGTGTTCGCAAAAATAGTGTGTCTATTTATGATTAGCAGCTGTTTTTAAATTTAACG # Right flank : TTGTTAGATAAATAATAAACCGCTTGATTAATTGTCAAGCGGTTTATTTATATTTTAATCGAAATAACTTGAATCAAACGTTATATAAACATAGTTATAAGTTTTATCGCTTTTATTTAAATGATAAATTTCAACTTCTTCAACAGCATCAGATATATTTAAAAATTTTAGGTACTTGTTATTTTTTTGTTCAGCAGGTTTTATGTTCGATTTAACATCCATTCCGAATTGCTTAAAAATATCTAAATAATTATTTTCGAATTTAAACGTATTTGTCTCATTTGGGAATGCATGGATTTTAACGACAATATCTTCAAATGTTGTAATTTCTAAATATAAATTATCTATAAAATATGTATGATTTGTTAGTCTAAAATCACCTTTACTTGTTTTGTTTGTCCATTCATCTGCATATTTAGGTTCACCTAATTTTTGGTATAATTGATCTTTCGTAATTTTAGCATATTCTGGGGCATTAAAAATAACAGCTACTTCCTTGT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 737971-738598 **** Predicted by CRISPRDetect 2.4 *** >NC_017294.1 Candidatus Arthromitus sp. SFB-mouse-Yit, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 737971 32 100.0 34 ................................ CTTTTGTTGAGGGACTCTCTAAACGCTCTTATAC 738037 32 100.0 35 ................................ TAAGTATATTAGACAACCATTTAATTATACAAAAG 738104 32 100.0 33 ................................ AATCTCTGGTTCGTTGAATAATAGTTTTAATAT 738169 32 100.0 33 ................................ ATTAAATAACAGTATTAAGGATGGTTTTTACTC 738234 32 100.0 34 ................................ TTCATCTATACAAGATAAAATTTTATTTTCTATT 738300 32 100.0 36 ................................ ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT 738368 32 100.0 34 ................................ GACACAATTGGAACAGAAACAACACAAGTAAAAA 738434 32 100.0 33 ................................ TTGTGCCAAGTTATAAAACTTTTTAAAAATAAG 738499 32 96.9 35 ...........T.................... GTATAAATCTGCCCTAATTAAAAATCTTATAGTTG 738566 32 96.9 0 ...............................A | G [738595] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.4 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : GAATATCCTCCATATTTAATGAAGTAGTGAGGTGATTCAATGCTTATTTTAGTTACATATGATGTGGGATTGAATTTTGATGATGGCGCAAAAAGACTTAGAAAAGTATCAAAAATTTGTGAGAATTATGGGATTAGAGTTCAAAATTCTGTTTTTGAATGTGTAGTTGATAATTTACAATTTGAGATGCTTAAGTCAGATATAGATAAAGTTATAGATAAAGAACGAGATAGTGTAAGATATTATAATTTAGGTAATTCTGGAAGAAAAAAGGTAATTCATATAGGCAATAAACATTCCATTGATGTTGAAGATGTTATTATAATTTGATTGCGAAGTATAAGCTTACATTAAATTTATAAGTGCTTCGCGAAGCTATATTAATACTTGATTGTAGCAGAATAATTGGTATTGATATTTATAGATAAATTATGTAGAATATTAGTGTTCGCATAAGTAGTATGTCTATTTATGATTATCAGCTATTTTTAAATTTAACG # Right flank : ATTAGCTTAAAATAGTTACGAATTATTTGGTATAGATCCGTTGAGATAAACGGTTCTATAGGAGGAATAATATGGATAAAAAAATAAAGTATTATCTTGATAGAGGCATGGATTATGATATGGCTAAATATTTTGCAACAGCTGAAAGAACAATTATAGAAGTTATTCCAAATAATGATTATACATTGACTCTTAAATTTGATAATGATGAGATACGGAAATATGATTGCAATGATTTAATAGAAAAAGGAACTGTATTTGAATTTTTAAGTGATTATGATAACTTTAAAAGAGTATATCTGGATGAAAGTAACGTAGTATCTTGGGATAAAGATCCAAATATTGATAGTAATTTAAATTGGAGTAATAAAGTTGATTTAAGTTCTGACACTTTGTATGTTAAAAGTATTCCTCAAGATCTGGGCAAAATGAAATTGTAGACTATTTTTATAATCAGTTATACTTTGAACTCTGAAAATTATTTGGAAATGTAAATAGTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //