Array 1 426688-427813 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNL01000002.1 Salmonella enterica strain BCW_4935 NODE_2_length_552584_cov_0.44049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 426688 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 426749 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 426810 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 426871 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 426932 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 426993 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 427054 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 427115 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 427176 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 427237 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 427298 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 427359 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 427420 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 427481 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 427542 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 427603 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 427664 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 427725 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 427786 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 444072-446178 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNL01000002.1 Salmonella enterica strain BCW_4935 NODE_2_length_552584_cov_0.44049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 444072 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 444133 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 444194 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 444255 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 444317 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 444378 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 444439 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 444500 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 444561 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 444622 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 444683 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 444744 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 444805 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 444866 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 444927 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 444988 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 445050 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 445111 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 445173 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 445234 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 445295 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 445356 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 445417 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 445478 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 445539 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 445600 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 445661 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 445722 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 445783 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 445844 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 445905 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 445966 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 446027 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 446088 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 446149 29 89.7 0 A...........TC............... | A [446175] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //