Array 1 108050-106556 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTU01000017.1 Streptomyces pilosus strain JCM 4403 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108049 29 100.0 32 ............................. TCGGCAGCGATATACGCGACCATCGCCTCATC 107988 29 100.0 33 ............................. TGATCCCTGGGCGACAGCAGCGCTAGTTGCGCA 107926 29 100.0 32 ............................. TTCGCACGCCGCGTGCGCCGGGCCGCCGAGCC 107865 29 100.0 32 ............................. TCATCGCCGCCCACGTCGATCGTTGCGGACGC 107804 29 100.0 32 ............................. CCCCATTTCGGCGGTGATGATGATGACGATGA 107743 29 96.6 32 ............................T GCCACTTGGGGAGCGCCCGGACCACCGACACC 107682 29 100.0 32 ............................. GCGAGGCGGTATGGAAAAGGGAGAGGGGTGCT 107621 29 100.0 32 ............................. GCCGGCCGGACCGGTAGCGGGACCGAGCGGCC 107560 29 100.0 32 ............................. GCCCGCATCGTCCGCGTCCTCATCGAGACACG 107499 29 100.0 32 ............................. CGGTCCGCGGACTGGCCAGCGGGCAGCGTGTA 107438 29 100.0 32 ............................. GCCCCGACCACGCGGCCCGACCTGCGGCGGCT 107377 29 100.0 32 ............................. TCATGACGTTCTGGCGCGTCCTGCGTGACCGG 107316 29 96.6 32 ............................A TACACCTCCAGGCGGCCGTCGACCTTGCGGGT 107255 29 100.0 32 ............................. ATCCGTTCGAGGTTGGCCCGGACCGCCGGATT 107194 29 100.0 32 ............................. CATCCAGACCACCGGCGGACCCGCAGACGCCT 107133 29 100.0 32 ............................. GCCTCGTACTCGAACGCCGTGTACCGGCGGGA 107072 29 100.0 32 ............................. CAGGCGCAGCTACGGATGTGGTGGGTGGGCGG 107011 29 100.0 32 ............................. TACCCGCACCCGTCCGACCAGATCATCGGCAC 106950 29 100.0 32 ............................. CCCGATTCCGAAGACACCGTGAAAGAAGTGAA 106889 29 100.0 32 ............................. GCGGGCGTGGGCGGCTGCTCAGGCCCTGTGGT 106828 29 96.6 32 .....................G....... AGGGACGCACCGGTAGCGAGGGTGGACGAGGC 106767 29 100.0 32 ............................. ATGCCGCAGCGCGCGCATAGGCCGCTGTCTTT 106706 29 100.0 32 ............................. GCCCCGGAGGCGATGCCACCGCCGGCCACGTT 106645 29 100.0 32 ............................. TTGGCTTCCTCGACCTCTGCCCCGAGTGGTAC 106584 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCCGGAGTGGCCTTGCCGATGTCATGCACTCCGGCGAGCCATACGGCGAGGGCACGGCCGTCCGGCTCGCCGTGCGGCAACGCCTCGGCGACCAGCCTCCGTACCCCTATGGGGAGCCACTGGTCCCACAACAGGCCGGCCACTGCGGCACTGTCCTCCATATGCCGCCACAACGGCAACCAGCTGTCGCTACGGCAATCGTGCTTGGCCCACACGGACCGAGCCGACTCCCCAAGCCGACTCAACAGATCCGGACGAGCACTCCCCCCAACGCTCATGTGCGATTCATACAGGGAAAGGTCGGCTCCGCACGCCAATATGAGCAGATAGGACTGTTCGCAGAAGAAGCTGCGTCCCCAAGACGTATGATGATCGGCTTGCTGTTGAACTGGTGAGAGATGCCCTACGAGATTAATTGCCGCTACATGTCCCATTTGTCGAAATCTGCAAACGTTACTGTAAGTGCGCTGCGGCGGCGATAAACATGCAGGTCAAACAGT # Right flank : CCCGAGACCGGCCAGTACGACGAGGAGGCCAAGGCCGCCGGCGACGACCCGGCCCCCGCGGACTGCGACCTGGAGGTCGGCGTGCTCGCGCAGATGGGTGATGTCGTCGATCGGGTGACCGTAGGCGCGGGTGGCGAGCTGCTCCGGCTGCGATCGATCACCCTGAGTACGCCACGCCGCATCGGCTACGTGTACCAGGAGACCATCGAAAATCCTGCGGTCTGGCCGCTAAGCGACCCTCCGACCTCGCTACGTGGGTCGGAGGGTCTGTCCGTGCTGCTACGTCAGGTCCCCCAACGTGGCCAAGCGTGCCTCGCTGACGTGCTCTCGTGGTGCGCCAGTTTCCGTCTTCCACTGCACCCACTCTTCAATGGTGTGGCTTCGAAAGTAGATCGAGTTGTCGCTGGCGCTCATGAAGGAGTATGGGCGCGTGTTACGCGTTCGTTCCCGTTCCCGATACTCCAGGCGTTCTGCCTGCAAGTTGCGTAGCGCCTGGGGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117783-120615 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTU01000017.1 Streptomyces pilosus strain JCM 4403 sequence17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 117783 29 100.0 32 ............................. GGCTGAACCACCCCGCCTCGTGGAGTCCCGGT 117844 29 100.0 32 ............................. AGGTCCCAGCTGCTGCCGCTGTTGCGCCACAG 117905 29 100.0 32 ............................. GGCACCCCCCTCCCCGCCGGCACCGTCACCGG 117966 29 100.0 32 ............................. GACGACCAGGAGGCGGCCTCCAGCCGGTACTC 118027 29 100.0 32 ............................. TCAGCGAGGGCCTCGGTGACCTCTTCGGTGAG 118088 29 100.0 32 ............................. GACGCGGACCGCGCCTCCGACGCGCTTACCGA 118149 29 100.0 32 ............................. GGGTGGACCTTCAGGCACCGCGCGGGGTCCTC 118210 29 100.0 32 ............................. AGGGCTAGCCCCGCCTGGGCGAGGTTGACGAT 118271 29 100.0 32 ............................. CACACGTCCCGCACGTCGGCGGCGGCGTAGTC 118332 29 100.0 32 ............................. CGGTCCCGCGGGACCAGTCTCACCGACTGCCG 118393 29 100.0 32 ............................. CTCGCCCCGCTCCCCGGGGCGTTCGGTGCCGC 118454 29 100.0 32 ............................. ACGGGCACGGCGCCCCAGGGCTCGCCCGCAGC 118515 29 100.0 32 ............................. GGCTGGGCGGGCCCCCAGGAGTCGAAGTACTG 118576 29 100.0 32 ............................. AACCGATTGGCGCGCACGAGTTGCTGCCGAGG 118637 29 100.0 32 ............................. CCAGGGGGGTTCCCAAGGGGTTCCCAAGACGG 118698 29 100.0 32 ............................. CCCTACCAAGGCGACTGGACCGGCGGCGGGAA 118759 29 100.0 32 ............................. ACGGTCGCCACGCGGGTGCGGCTGTGGCAGGG 118820 29 100.0 32 ............................. CTCCGTCGTGTCGGTACGGCTCCCCGCAGGGT 118881 29 100.0 32 ............................. GGGCGCTTCACCAGGGTGTCGAGTTGGCCGAG 118942 29 100.0 32 ............................. GCGTCCGGTCTCCGTGCCGTGCCGGTGCGGGA 119003 29 100.0 32 ............................. CTCAAGCACCGGCCGCCGTCCACGGTCGCGAC 119064 29 100.0 32 ............................. TCGCCCAGGTCGACGCCTGCCCGGCGCAGCGC 119125 29 100.0 32 ............................. AAGGCATCACCGACTGGTGCAGCCTCGCTTCC 119186 29 100.0 32 ............................. CAATGGACGTCCTTTACCGGCTGGTGCCGGGT 119247 29 96.6 32 ...............C............. AGTTCGGTGAGGTCGGCGATGTACTTGCGGGC 119308 29 100.0 32 ............................. GAGCTGTTTCGCGGCCTGGACTCCACCGTCGT 119369 29 100.0 32 ............................. GGGCGCTGGGACCTCGAAGTGGTCAACGGCTC 119430 29 96.6 32 .........T................... GTCGCCCGCGCCGAGCTGTCGCCGCGAAGCAG 119491 29 100.0 32 ............................. CCGTCGGCGACGACGTCGGCGCACGCCTCGGC 119552 29 100.0 32 ............................. TGCCGCGAGTGCTAGGCCGTGACCGACCACGA 119613 29 100.0 32 ............................. ACGAAGCCGTCGAGTCCCCAGAAGGCGAGGGC 119674 29 96.6 32 ..........................A.. TCCATGTCGAGGGGCACGTAGCCGTGGATGAC 119735 29 100.0 32 ............................. ACGAAGCCGTCGAGTCCCCAGAAGGCGAGGGC 119796 29 100.0 32 ............................. GAGATCGAGCGCTCCGCGCTGGACACGGCCGT 119857 28 96.6 32 ........-.................... TTCATAGCGTGCCGAACCGGTTGGGGTCACCT 119917 29 100.0 32 ............................. GACGACACCGCCGGTGCGATGGCCCAGAAGCT 119978 29 100.0 32 ............................. CCGAGGAGTGACCCCGTGAGCGCCCTCCCCGC 120039 29 100.0 32 ............................. GGCGCCCGGCCGACGGGCGTCGTCTACCTCGG 120100 29 100.0 32 ............................. ATGCTGCCCGACTGGAAGGGCCCGGCATCGAA 120161 29 93.1 32 ...............A.........C... CTCAACGTGCTTGGCCCGCTCTCCGACTGGAC 120222 29 100.0 32 ............................. TCACCCAGGCTCTCGTGGAACCACCAGACCTC 120283 29 100.0 32 ............................. TACGCCAAGGCCGCCGACCTCCGCGCCCTCGG 120344 29 100.0 32 ............................. GCCCTCAGCGTCTGGCACGACAAGACCGGCGG 120405 29 96.6 32 .............G............... CCACGACGAATGCGCGGACCTGGCCAAGCAAG 120466 28 93.1 32 ........-...................T TGCCGGACGGACGTGCAACCGCCGGGGACGGA 120526 29 93.1 32 .C..G........................ CGGTGCGACACCGGATCCATGGCGTACCACCA 120587 29 93.1 0 .C............A.............. | ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGTCAACTACGACGGCCCCGACCAGGACTACGGAGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCTGGATTACGCGGCTTCCTCACGCGCTGGCTGCTGGAGATCTCCGCAGGCGTGTTCGTGGGCAACCCCTCGGCCCGCATCCGCGACGTGCTCTGGGAAGAGGTCCAGCAGTACGCAGGCCAGGGCCGCGCCCTACTGGCCCACACCACGGACAACGAGCAGGGCTTCACCTTCCGCACTCACGACCACGCCTGGCACCCGACCGACCACGAAGGCGTCACTCTGATCCATCGCCCCGCCCCGAATGCACCGCCACCCGGGCCGGCCCCCCAAAGCGGCCCACCCTCCGGCTGGAGCAGGGCTGCCAAACGCCGACGCTTCGGAAGAAGCTGATGCACATGAAACCCCTTACACCCCATATGCCGGAATCAGAGAAAGTACTCGAAAACCGCTGCCGGCCCAAGTAAAACAGCAGGTCACCCAGT # Right flank : CGATGCGTCCTGGCGCATCGTCTCGAACGAACTTTGTACGGCACCGCCCGGTCGGCAGCATGCACGGTTACCGCCGCCAAGCGAGGCGTCATCGGACCAGTGCCGGCCACCCGAACCGTGGTGCGCTCCCATATGGCCCTCGCCGCCGATGCCCGCCGGCTCGAGAACGACTCAGGGCCTGCTCAGCCATCTGAATGCCGACCTGCGCAGCGGCAGTCGCCCCGGCCTCCGCCAGCATGGCCTTGACCCGGTTTGTGAACTGCCGCGTCCGACCCGGCTCGGGAGTTCGACGACGTGGCTTCGTCGTGGAGCTCCTGGGCGACGCGCTCCAGTTCCACGCGATCCGCCTCGGGCATGCCCGAGGTGTTGCTGATCTGGCCAACGTAACCGGCCAGCTGGACAAAGGCGCTCGGGTCGATGCCGGCGGTGTCGTTCTGCGTGACGTTCTGCTGCTCGCCGATGATGACGCCCTGCGCGTTCAGCCGATCCCGCCGGTGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //