Array 1 81801-76734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAQ010000003.1 Shewanella algae strain LC2016-3 NODE_3_length_120087_cov_188.972482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 81800 28 100.0 32 ............................ ATTTTACTGAGCCTAACACGCAGTATGTTGCT 81740 28 100.0 32 ............................ TGATCTGTCAGTTCGGCCACGTTTATACATCC 81680 28 100.0 32 ............................ AGTGTAGGCATCAAGTCCAGCTGCCGAGAACC 81620 28 100.0 32 ............................ AATTGCAAATTTACCAGTTGATATCTCATTAG 81560 28 100.0 32 ............................ AATAGGATGGGTGGATCACCATTACACGGATG 81500 28 100.0 32 ............................ AGTGGGACAATGTTGGATCGGGTACTGCTTTA 81440 28 100.0 32 ............................ ACTACACCGACGGCATCATGCACCAGTGGGAC 81380 28 100.0 32 ............................ TGCTGATAAAGATGCCGAGTTGCACCGTTGGA 81320 28 100.0 32 ............................ AACTATGCGCTCAGACGCTTTACGCTCAACCC 81260 28 100.0 32 ............................ GACTTGGTTGAGTGCCAGCCGCTGAGTTACAC 81200 28 100.0 32 ............................ TCTTTAACGAGCCTATGTCCCATCGTATATTC 81140 28 100.0 32 ............................ CAGCACCAGCGCCCCAGTTTGGCGGTCAGGCC 81080 28 100.0 32 ............................ TAATCAAAGGTGAAAATAAAGAGGCATTTCAA 81020 28 100.0 32 ............................ ACAAGCTCATCGTGCATGTTGATTGCTAACTC 80960 28 100.0 32 ............................ TGCTCAATCGTGTCACTCAGCTTGCGCATCTT 80900 28 100.0 32 ............................ TATACGATGGCGGCGCGCTTGGCGGTGCTTAT 80840 28 100.0 32 ............................ TTTGATGAATGCCCACATGTTAACCTCTACTT 80780 28 100.0 32 ............................ ATCCATGTCGGAAATATCCGTCTTGCATATAT 80720 28 100.0 32 ............................ ACTAAATGACGAGCTGTTAGCCCACCATATCC 80660 28 100.0 32 ............................ GCTATTGATGCGGTACATGCCTTGCCTGGCGA 80600 28 100.0 32 ............................ TTGTCAACGTGGCTGTCCTAACTACAGGCTTT 80540 28 100.0 32 ............................ TTCATGTTGTTTTCCATGGATAACCGCATCAT 80480 28 100.0 32 ............................ TCTTGCTAACTTCCGTCACCTTGAGCGTGCGG 80420 28 100.0 32 ............................ TCATCAACGTGCGGCTCGTGCTGCTGAGAATG 80360 28 100.0 32 ............................ TGAAGAACCCAGCAACACCGGTGTCGTACAGT 80300 28 100.0 32 ............................ AATGCAACATATTTTGAAGTATTTTACAGAAT 80240 28 100.0 32 ............................ GTTATCGACGTGTTTCCAGTGAGGCTTAGTGT 80180 28 100.0 32 ............................ ATCGATAGCTCGTCAGCTACTTATGACACTAT 80120 28 100.0 32 ............................ ACTCAGCATACGTACAGTTATTGTTGTCAATA 80060 28 100.0 32 ............................ TTCACCCCGGCGTCGTAGATGCAGAACGCCCC 80000 28 100.0 32 ............................ ATCAAGACAAGAGGAAGCGCAAAGAAAGCGGC 79940 28 100.0 32 ............................ CAATGGGGATTTTCAGTGTGCTGTTTGTGAAG 79880 28 100.0 32 ............................ ATGTAGCGACGGTTATATTCGTCTTCGATGGT 79820 28 100.0 32 ............................ TAATAGGGGGCAATATGAAAGGGCTGTTTTCG 79760 28 100.0 32 ............................ CAGACAGGCGGTCAGGCATTAGGGGTCAGAGA 79700 28 100.0 32 ............................ TTGCCGAAAAAGAGCAGCGAATGCGCCAAACA 79640 28 100.0 32 ............................ ACATAGCCGTCAGGGACACCGCTGGTTTGGCT 79580 28 100.0 32 ............................ CAGATGAAATGGCCGCCGATAGCTCATTAACA 79520 28 100.0 32 ............................ GCAACGCGCGACAAGTGCGCCTTGATTCGATA 79460 28 100.0 32 ............................ TTAACTGCTCAAGATATGCCTCGGCTTGTTTT 79400 28 100.0 32 ............................ GCAGACTAGACAGACTGGCCATTCCAATCCTT 79340 28 100.0 32 ............................ GCTAATCATGGCGCTGAACTCTGCATACAGCT 79280 28 100.0 32 ............................ TTATCGCAATTCCAAGGACGATGGCGCGACAC 79220 28 100.0 32 ............................ AACAGCCGCTTGCGAGAGTATGTGGCGAAGAA 79160 28 100.0 32 ............................ AGTTTCAGGGATTTTTATGGTTTCGCGGATGT 79100 28 100.0 32 ............................ GCACTCGCCAAATTCATCCTTATTTTGTGGAT 79040 28 100.0 32 ............................ TTCATGGTTCCAGTAGAGCACATTTACCTTGA 78980 28 100.0 32 ............................ ACCTGCGACAGTGCCTAGTGAGCCAACTTATC 78920 28 100.0 32 ............................ AGTAAGCCTGCTGGTAATTGCGAACGCCTTTG 78860 28 100.0 32 ............................ TGTGGTATCGGCTGTGCTTTGAACCTGTCCGG 78800 28 100.0 32 ............................ TGGAATGCGGCGACCCGATACCGGATGCCAGA 78740 28 100.0 32 ............................ GCCCAGCCAGTACCCCGGCGTTGTTGCCGTGC 78680 28 100.0 32 ............................ TGTTGACCTATTGTAATACGGCAATTTCCTTG 78620 28 100.0 32 ............................ TACGCGAAATGAAGAGCAATCAGATATTGAGG 78560 28 100.0 32 ............................ CGCGGCACGTAAAGCCACAGCAGCCACGGCCA 78500 28 100.0 32 ............................ TATCATCGCTCAGCGGCTCAGGAACAAGAGAT 78440 28 100.0 32 ............................ GTCAATATCGAGCATGGCTTTGCAGTTCGTAG 78380 28 100.0 32 ............................ TTTTCGATGTTGCAATCACTTGGCAGCTGAGC 78320 28 100.0 32 ............................ AGGCATGCTTCCCACCTGAAAATATTGCCCAA 78260 28 100.0 32 ............................ TTATTGCAGTATTATTAGAAAAATAATTAATA 78200 28 100.0 32 ............................ TAACAGGGTGCCAAAGTGATGAGCAGGCAGAA 78140 28 100.0 32 ............................ TATGTATAGTTTTCTTTACGTTTGCAGGAAGT 78080 28 100.0 32 ............................ TCATCCCACGCCATGCCAATGTCGTTAGATTG 78020 28 100.0 32 ............................ ACCGAAGTGACAGTTACTGAACATACAGTCAG 77960 28 100.0 32 ............................ ACCAATAACGAACGGTACGGGGTTTTACACAA 77900 28 100.0 32 ............................ TGACGATGATGAAGAAGTACTGGCTCCAAGCA 77840 28 96.4 32 .............T.............. CGGACTTTGTTCGCATCGACGGCGTGCCGTAT 77780 28 100.0 32 ............................ TATACGGGCATGCTCGCTGGCCTCGTTGAAAC 77720 28 100.0 32 ............................ TTTCTGGTTTCCCTGGCCAACTCTGAAAACTC 77660 28 100.0 32 ............................ TGTGAAGAGCGCTGGCTATCAGTCGAAGGCTC 77600 28 100.0 32 ............................ CTGTTTGAGAACATGGCGCGCTGGTGTGATGA 77540 28 100.0 32 ............................ GCTTGGTGTGGAGCCTGACGGTTTTAAACCCC 77480 28 100.0 32 ............................ TGGGGCATTGGTTTCAGTCACCATGGCGTAAT 77420 28 100.0 32 ............................ ATTAGTCTTCCTGTTGGTTGGCTATTAATGTT 77360 28 100.0 32 ............................ TCATTGCGAAGAACGATGACGCCATGGCTATT 77300 28 100.0 32 ............................ GAATTGCCAACCTCGCTCCCTAACCCCCCAGA 77240 28 100.0 32 ............................ TTATATTCTGTTGCGACGAAGCAAAAATATTC 77180 28 100.0 32 ............................ ATGAAGATGATTCAATACATTTTGGGCGCTAC 77120 28 100.0 32 ............................ ATGCTGTGTGATAGTCAGTGCCTCGGTAGTAT 77060 28 100.0 32 ............................ CTTCATTGATGTTTAGGTCCATGAACGCGCTA 77000 28 100.0 31 ............................ TCAGCGTCCTTCGGCATTTTTTGAGCTTTGC 76941 28 100.0 32 ............................ TTTCTCAGGCCGAACTGGCGGCGCTACTTGGC 76881 28 100.0 32 ............................ CTACTTTGGTGAAACGATAGCGATCCATAGCT 76821 28 96.4 32 ..........A................. TGGCGCAGATAACGTGGGTCCACCCATTTGTA 76761 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 85 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCAGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGAACTTTTAAGTATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGACTGAAGAGGCCGAAACTGAAGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGACCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGACGGGCGCCACTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGTCATGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTAACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30665-31472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAQ010000008.1 Shewanella algae strain LC2016-3 NODE_8_length_104589_cov_215.113877, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30665 28 100.0 32 ............................ CATCGAATGACTGCGGCAATAGCCCCACCAAT 30725 28 100.0 32 ............................ GACAACTGTAAGGGAAAGCACTGTAACAATGA 30785 28 100.0 32 ............................ TGTTGAAGCGCCACTTTTGATAACCCTGAAAT 30845 28 100.0 32 ............................ GCATAGGTGAGATGCATGAGTGGCTAGAGCAG 30905 28 100.0 32 ............................ GCAGACGGCGGCAAAGCGCAGGGATATTTCCG 30965 28 100.0 32 ............................ ATAGTGCCGCTTCTTTGTGCGACTGCAAACCG 31025 28 100.0 32 ............................ ACGAACAATAGCGCCAGCGCGCCCAAAGATAG 31085 28 100.0 32 ............................ GTCTATGATCGGCAACTCATCTAATCGTGATT 31145 28 100.0 32 ............................ TTTAACTTGGCGCATCCTGGCTTCGTGGAATT 31205 28 100.0 32 ............................ AATAACCCGGCTTGGGTTTGGTATGACTTGGT 31265 28 100.0 32 ............................ TTTAAAAATGACTATCAAGAATGGAGCAAAGA 31325 28 100.0 32 ............................ TTTATGAACCAAGCCATGCTGGCATTCAAAAT 31385 28 100.0 32 ............................ AACACGCATGGACTCAATTTGAAGCTATTTTA 31445 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTGAACTGCCGAATAGGCAGCTGAAGAT # Left flank : TTTTCACACTCAGTGACATTTCAGAAGTCCCAGATACGTGTAAAGAAGTACGGTTTAAACGAAACCAAACCATCGCCAAGATATTTGCCGGGGACAGTAGAAGGCGATTAGCCCGTTTGAAAAGAAGAGCTGAAGCCAGAGGTAAGCATTTCACGCCTCCTATCCGGAACCAAGCCAAAGAGCTAGGCCCATTTCACTGCGTGGCGGTCAGCAGTGCAAGCACAAGCCAAGACTTTTTACTTCACATACAAAAAGAGACAGTGAATCAGGCGACATCGATTGAATTCAATCAATACGGACTCTCGACTAACCAAAAGTTCACCGGAACAGTGCCAGATCTGAGCCCATTCAAGCCGAACGATACCCGTTAACCCTTTTTTGTGAGCAACGCTTAACCGCCTGAATTTATGCCATTTTCTTCCGCATCTTTTTTAGATGGTAAAAATAGGATAAATTCATCAACCTATTGAACACTAGTGAAATTTTAAATAGTGCTCATA # Right flank : TAAAAACAATCGTTTCGATGTTTAAGTTAATGCAAACAACTGCCGAATAGGCAGGGCTTGTTCTACTTACATGACAAGTGAAAGATGCCCCCTTAAGAGGGCATCTTTTTTTATGGGGTAGGCTAGGACAGGTTCTCCAGATCGTTCGTCGTTCAGGCGAATTATGGTTACACTGAGCTAGTACACACGCAGGTATAGAGCAAAGCGAATGGATACGGTACTGCGGCACAAAGTTTGGGAAGTCTATGTAAAAGAGAAAAGGCACCCGATCATTGCCTCGAAAATTACACAACCCAGCAGCGATGGGGTGCAACTACACGATGAAGCACTACTCAAACGCACCATAGCCGAACACACCCACGGTAACGAAACCTACATCACATGCTCTCAATGTGGCTGCGGGCTATTTTATCGCTCCGGCAACAACGCCCAACGCCGGGCAGCCCACCTTTATCACAACACCAAGTTCGCAAAAGACTTGTCACTCACAGAAAACTGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAATAGGCAGCTGAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //