Array 1 61004-61887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOA010000027.1 Cronobacter malonaticus strain MOD1_GK1510 cmalGK1510_contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61004 29 100.0 32 ............................. ATTACCAGGGGGGATATTGGGAGTATCTTCAG 61065 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 61126 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 61187 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 61248 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 61309 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 61370 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 61431 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 61492 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 61553 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 61614 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 61675 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 61736 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 61797 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 61858 29 93.1 0 ...........TT................ | G [61875] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGTTCTTCACGCCTGTCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40-1047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOA010000044.1 Cronobacter malonaticus strain MOD1_GK1510 cmalGK1510_contig_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 101 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 162 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 223 29 93.1 32 ..........T.T................ CACCGCATCGACACGCCGACTGCGCAAAAAGA 284 29 93.1 32 ............T.....A.......... GACGAATTATGGAACGTAAGTTTCTCGACTGG 345 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 406 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 467 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 528 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 590 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 652 29 100.0 32 ............................. CCGCTGACGAATACGCCGTTATTTATGTAACC C [661] 714 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 775 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 836 29 96.6 32 ............T................ ACTACACCCGAATCTACCCGAAATGACGCCGA 897 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 958 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 1019 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TAAACCGAATCTCCTTAAGCGCGGCCATGTACATCAGGTG # Right flank : ATGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 905-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOA010000061.1 Cronobacter malonaticus strain MOD1_GK1510 cmalGK1510_contig_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 904 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 843 29 100.0 32 ............................. CCTGCCGCGCAGCACCGACAGCGCCGGTACAC 782 29 100.0 32 ............................. CATTACCGTATTGACGGCGACGCATTAATCGC 721 29 100.0 32 ............................. GACTCGCCCACCCATTTGGCCACCGCAACCAG 660 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 599 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 538 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 477 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 416 29 100.0 32 ............................. CACGAGGACGAATACGTCTGCTACGTGTACGT 355 29 96.6 32 ..A.......................... GCCGATATCTCTGATTGTTACTCGTCGCTGAA 294 29 100.0 32 ............................. TCCGTCCTGTGTGTGGGCGTTGACACTGGCGG 233 29 100.0 32 ............................. AATCTCCTTAAGCGCGGCCATGTACATCAGGT 172 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGGGAAAAAAATCA 111 29 100.0 32 ............................. TCCAGGACATGAAAACTGACGCGCAGAAAAAA 50 29 82.8 0 .A.G.....C...........GG...... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GCCGGAGGCTACGGCGCGGGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //