Array 1 30028-30660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHGF010000012.1 Rhabdobacter roseus strain DSM 105074 Ga0415339_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 30028 37 100.0 37 ..................................... CATTCTGAGTACCACCGCCCCGGCCAGGCCCAGTAGT 30102 37 100.0 37 ..................................... AGCGCCGATGCGTGACGGTACCCGGTACCGTGGCAAA 30176 37 100.0 38 ..................................... GCGTTATTGTGTAAGTACTCCCAGCATTGCGAAGCGAA 30251 37 100.0 38 ..................................... CTAAAGGTCGGTAGTAATCTGTGAAATGTCAAGGGGTA 30326 37 100.0 38 ..................................... GAAAACCTGAAAACCCTACGACTATGAACGCGGAAAAT 30401 37 100.0 38 ..................................... CTTACATGGCCGTAAAGTGCGATTCCGTGGAGCAGAAA 30476 37 100.0 37 ..................................... ACAAAGACAACAACCCGATTGCCGATACCTCCGTAAA 30550 37 97.3 37 ...................G................. TAGATGCGGTTGTAACTAGTTTCGTAGTTATTACCCG 30624 37 94.6 0 ...................G................G | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.1 38 CTTCCAAAGTACCTTCCAAATCAAGATGGATTGAAAC # Left flank : CCCCGCTCGACTACAAATTTGCCGAGTACAACGACCGCGTGTATGACACCTACCGCACGCAACTTTACTGCTACGCCTGGCTCATCGAGGAGCATTTTGGCAAACCCGTCCACAAGGGTTTCCTGGTGTACACCCGCAGTCGGAACAAGGTAGTAGAGGTACCCATCACCGACGCCGACAAGGAGCACGTGCGCGCGGCGGCGCGCGCCATTTTTCAGATTATCGACGAAAATCGCTTTCCAAAAGCTACCAAATACAAGGCCCGTTGCGTAACTTGCACGTACCGCAATATGTGTATCCGATGAGTGTTTCCGGCTGTGAATTTATGGAGGTAGTTGTCGAAATCAGAGGTAATTCGCTGTTGGTCAGCAATTTATACTTCCGGAAAAGGGGCCAAAATCAACCCTTTCCAAGCTCTTTGACGTATTGTGTAATGAAAAATAGGGCTAAGCAAAAAGCAAATAAACAATTAGTATTCAGCACTTTGGAGCTCCCGACGA # Right flank : GAGTATTGAATGCAGGAATCTTTGCTCCTTGAGTGTTTCTGTTAGGAGGCGAGATGGTTATTTAGAAACAGCGTAGGGTACTTTATAGGTAGTATAAGGCAAAAAAAACCTCCCGGCTGTCGGGCGCGGGAGGTGGAAAACGGGTGGAGTGGGAGTCGTTTAGGTTTTGTCGCGCAGGAGCTGGGTTACGGCGGCCGCGACGAGGCCGCCCACCAGGTACCAGGCTACAGTCAGGACCTGGGTTTTGGAAGTGCGGTTGCTGGGGGCTTCGTCGAGGCCGAGGGGCTGGGGCAGCAACACCGCACCAACTCCGGCGGCCAGCCCGAACAGCGCGCCGCGCAGCAGCAGGTTTTTGTCCTTATCGGCCCCGATGAGGCTGTAGTAGGTGGCGTTGCTGACCAGGTCTCCGGCGAGCGTGAGGTTATAGAGCGTTTGGCCGGATGGTGGCTCAACGTTTATTTTTTTTAACGATTTTTCCAGCGCCTCTTCGCCGATCAGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAAAGTACCTTCCAAATCAAGATGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 49138-48294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHGF010000018.1 Rhabdobacter roseus strain DSM 105074 Ga0415339_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 49137 37 100.0 40 ..................................... GCTACACCGCCGATGTTCTTAGCGGTCGCTATACCGAATA 49060 37 100.0 37 ..................................... GAGGTTACTTGTTACCAGTACGTAGGCCAACACGATT 48986 37 100.0 37 ..................................... CAGAACCCGAAAAAATGGGCTGAGATCTACAATATCA 48912 37 100.0 37 ..................................... TTTCCTGGATGTACTGCTCGGCGCGCTCCCGGCGCTT 48838 37 100.0 35 ..................................... AGGGATGTACCTGGAAGATGGCGAAGCGATGCAGG 48766 37 100.0 34 ..................................... TGCGAAAAGACGACTATTGGATAGGACAAATCAA 48695 37 100.0 35 ..................................... AATCGTCCCGTTGAAGCATTCGCCGCCGCAACAGC 48623 37 100.0 37 ..................................... TGGCGCAAAGAGGTCTCTGTGCAGCTACAGGACCAGT 48549 37 100.0 38 ..................................... AAGCCGGATAATGGCGGTTTACGTGGGGATGTAGCAAG 48474 37 100.0 37 ..................................... TAGAAAGCGAGCCTGAGGTAACGGCAGAAACAATAGA 48400 37 100.0 33 ..................................... CTTAATTACTAACCAACCAAACCAGCCGAACGG 48330 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 100.0 36 GTCTTAATCCTTATTCTGTTGGAAGGTACTTTGCTGG # Left flank : TAGCCGCTGGGACTTCGACGCCCTCTTTTCCACCATTGTGGGTGTAACGCGCCCGGCCCTTCGGGAGCCAGAGCGGATCGTGCTGCGGGTGTACGGCGAGCGGGCCAACTACGTGCTCACCAAGCCCATTCACGCCCACCAGCAGCTCCTGGACGAAACCGACGACTACGTGGACCTGGAGTATTGGCTCATCCCGAACCCAGAGCTCACGGCCTGTATCCTGGAGCTAGGGCCCGACGCCGAGGTGTTGCTGCCCCTTAGCCTGCGGGCCGAGCTGGCCGCGCTGGCCCGCCAGCTGGTGGAGCGCTACGAGGGGCCCTCTCCGCTGTGTGAGTAGGTGAGCCAGCAAAGTACCTTCTATCTCAAGTCCTGCCTTACTCCCTATTCGCCGGGGCGCGTAGTCCGGGGCGCGCAGTCCGGGGCGCGTAGTTCGGGGCGCGTAGCCTGGAAGGTACTTTGCTGGCCCGAAAAGGTGTTCAGTAAGTCCGATCCCAGTAAAT # Right flank : AGCCGGTAAGGGCATGGGTTTAATAATGAGGTGGTTAAAAGGTTTAATATGGGTAAAGTCATATCAAGTATAGGAAATGTACCGATTAAAAAAATGGGCATAGCACTCCATGGCTTCAAAAATACGCATGGGGTGTGAATTAAAAAAACAGGGTGTGTCTTGAGGCCGTCAATACTTCCCACTCAAAGTCCTTCCCGATGCAGTTGAGCTTGTTGAGCATGTCTTCGCCCACGGGCAAGATCAGGATGGAGTCGTGGTTTTGGTAGGCTTCCTGGATCTGCCGGAGCGTGTCGGCGATGTCGCGGTGCAGGTGTCGGTGGAGCCGGGCAAAAAACACCGATTTCTGCACGCGCTGGCAGCCTTTTTTTTCGAGGTACTTCGCTACCAGGCGGCGTACCTTGTTGCTTTCGATGTCGTACATAATGAAGCAGTACATTTCTTCGGGGCGTTTGGAGGTAGTGTGTAGGGTTTTATACAGCAGGCGAATCCCTTCGGGCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTCTGTTGGAAGGTACTTTGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //