Array 1 127633-126996 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHW01000017.1 Cylindrospermopsis raciborskii S10 NODE_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 127632 37 100.0 41 ..................................... AGAAAATTCCACTTTGACGCAGAAGAAACATACTACGGTTC 127554 37 100.0 38 ..................................... TTTGGTATCGTCTATTGGGACAATACCCAAATTTTCGC 127479 37 100.0 37 ..................................... TTATCGTTTTTACTCGTAGTTGTTTTTGCCTTGCCGT 127405 37 100.0 39 ..................................... TAAAGGAGAGTTTTTCAACATTTTCAATATCAACTATTT 127329 37 100.0 35 ..................................... AAAATATAACTACATTGCGTAGGTATATTCCAACT 127257 37 100.0 36 ..................................... TCCAGAATTGAAAAAGTTTGCGGTTGAAAATGATTT 127184 37 100.0 38 ..................................... TCCATTACTGTTGGTTTTTTTGTATCTTTGGGGGATGA 127109 37 100.0 40 ..................................... AAATAGATAGGGGTGGGATACCCGTGGTATCCCCCCTATT 127032 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : ATGCTTTCAGGGTATTCATTTAGTTGAATATAACAATGAAAAACAAGTCTCTAATTGGACTAAAGATAGAGATTTTATCTTGAATCTTTTGCCAAATGATTGTTTACGTTATTATCGATTAGTAACTTAATTATTCTATCTACCAATTTAATTTATCATGTTTAAATGAGCTATTTGATTTACAGCTCCATTTTGCTATGTCTATAATCTTGTTTTTACCCTGGAAAAATTAGTCTATTTTATGATTTTACCTTGAATATCTTAATTTTATTTATTTGTTCACCTCTCTGGGTAATGTGAATTCTTATTGCTGCTTATTGAGAATAGATTTTGATGACATTTTTGCTGATTTACTGTTTCTCGAATGCTTTTTTCACTCTCTATGTTTATTTTTATGCTAACTTTGATTTTTATCTTAGTAATTTCCCTCCCTGATAGTTGAGGGTGCGGAATGTGGGTTGAAACACAAAAATCATAGATTGCATCATTAGATACAATGA # Right flank : TTTTTTCTTTTAAACGAGGTATCTTGTGCTACTGCAATCAAACTCAAATAGATATCAATGTGAGGTTCAAATACTAAACAAGCAAGACTAATCACTTTAAGTCGGAAGAATTTCAAGTTTCTTATTATTTCCAGAGATTGAAGAATAATAGTAAAATTGTTAATGAATTAGCAATGAGATAAAGAAATGAAATTAAAAATTAAACCGGTATATTATCAAACCAAGCTAAGAACATCAGTTCCATTTCCAGAACTGGGAAACAACATATCACCCTATCAACATCAAATACAAACATATTGTGCCATAGCTAGGAATCAAAATTATAAAACAGCATCGCAATGGTGCAATAACTGCGAGTTAGTTGAGAGATGTGACATTAATAAATTTCAGCCTTCAGACACCCATAATAGTCTTTGTATTATTAATTCAGCTATTACAGGCGGTGGCAAAACATTAGCTAACTATGCCTACTCTGTGGAACACTGTTTAAATACATCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 4720-588 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHW01000002.1 Cylindrospermopsis raciborskii S10 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4719 37 100.0 36 ..................................... TAGACTTGACAAGACTAAGCGCTCTAAATTGTTAAC 4646 37 100.0 38 ..................................... GGAGGTAACTTCGATGGGAACACATCAGATATCGATAT 4571 37 100.0 35 ..................................... GTGTTTTTTAGAACATACAGCAGAATAACTGATGG 4499 37 100.0 43 ..................................... TCTACCTAAGTAGAATTCTGCAAAGCCAGGAGCATAGGCAATT 4419 37 100.0 39 ..................................... TTTGCAATCCGCACTCAAAAGCGCATACATCAATCTCTC 4343 37 100.0 37 ..................................... GAGAATATCCAGGAGGTGATTACTCCCCTCCTAGCCC 4269 37 100.0 37 ..................................... CCATTCATGAATTATTTCTGAGTGGCTCATATCTTCG 4195 37 100.0 36 ..................................... CCTGACAAAAATTGACCCAAGCATGTCATTAAACTG 4122 37 100.0 41 ..................................... AATCTCAGATAAAGCTTTTTGAGACTTCAACTCATTTACTT 4044 37 100.0 36 ..................................... GTGGAACTAAATCTCTATTAACTGGTGCTTCCCCTG 3971 37 100.0 37 ..................................... GAATATTGGTGATGAGTAACTGGACACAGTCCAGTTA 3897 37 100.0 33 ..................................... CTCAACCAACCCTGACTCAGGGTTAACAGCAAT 3827 37 100.0 38 ..................................... ATGGTAGCATGATTGCATCTATTGTAATAGGTGACTAT 3752 37 100.0 35 ..................................... AAAAATTCAGATTCTTTCTCGAACCACTTGACAAT 3680 37 100.0 39 ..................................... AAGAAGAAGAGGAGGAGATATACCAAAATGAACATTACA 3604 37 100.0 34 ..................................... TTTTTTGGCTATCCCGCTTCAATTCGTTAATACA 3533 37 100.0 37 ..................................... TTTTTTGCGTCTTCTTTCCGCTTTCCCTAGCGGTGAC 3459 37 100.0 37 ..................................... CCTGTTTTTGGGGATAGAGTGTTGTCGGTTGACAGTT 3385 37 100.0 36 ..................................... AAAAGACCATTTCATTAACAAATGTTAATGTGTCTG 3312 37 100.0 37 ..................................... TAATAACTGCCGGATGTATTTCTGTAGGCTTTCTTTG 3238 37 100.0 40 ..................................... TAGTGTATCCTTAACATCATCTATAAGCCCATTTGCTAAC 3161 37 100.0 38 ..................................... AGATAGCCATAAAAACCGGGTATTAGACAGCTTAATCC 3086 37 100.0 38 ..................................... TTGCCATCTTTGTTGTCTCTTATTACCAGTACTTACAT 3011 37 100.0 40 ..................................... CACTTTATCCACAAATAGAGATTTAATAGACTTTATTTGT 2934 37 100.0 36 ..................................... AACACAAATCAATAAGATCTGAGACTAACCAGACGG 2861 37 100.0 38 ..................................... GCGGTTTTAGGTCGTGGCACGAGCTAAAACCCATGTCC 2786 37 100.0 37 ..................................... CCGGTAAAGGTGTTATCTCTAATACTGGTTGATTATC 2712 37 100.0 41 ..................................... AATGGCTATATTAATGTCCCCTAGTGTCGCACTCGACCCGG 2634 37 100.0 39 ..................................... GATATGTAGTACCGTTTAGATATCCTGGTTCGATATTTT 2558 37 100.0 40 ..................................... CAGCGCTATAAGGATTAAAACTGTGAATGCACATTACAAC 2481 37 100.0 35 ..................................... GGAAAACTGATCACACTGTGCTTAAACATTTATTT 2409 37 100.0 38 ..................................... CCTAACACCGCAATCAGTCCTCACCACGCCCGATAATC 2334 37 100.0 37 ..................................... TCTATGATGGTTTCCTTAGCGGCGGGTGCATCCCGCG 2260 37 100.0 36 ..................................... TAGTCATTTTAGGAGCTGTATAGTAGTCCTCTATAT 2187 37 100.0 37 ..................................... CCAGTGGTTTAACAGTTTTATTGCCGAATAGTAGCCA 2113 37 100.0 37 ..................................... AAAAACTCTTGCAACATCTTTTTGTTAAGTTATCAGG 2039 37 100.0 41 ..................................... ATCGTGCCAAACTCTATTACTTCTGCTAACAAAATTATCAC 1961 37 100.0 35 ..................................... TAGAAGGATACATAACGTTTTCAATCAATGATTGG 1889 37 100.0 38 ..................................... ATCTTGTAAACACAGGATAAGGGTTGAGGGGTGGATAG 1814 37 100.0 37 ..................................... CACAAATAAAGTCTATTAAATCTTTGTTTGTGGATAA 1740 37 100.0 37 ..................................... GAGGCTTACTTTAGTTTATGTAAGTCTCAACCAAAGT 1666 37 100.0 37 ..................................... ACACTATAATTAATAGTGGTAACAGAAAAAAATCTAA 1592 37 100.0 34 ..................................... AGTGCGACATTATACATTTGACCGTTCCAATAGA 1521 37 100.0 36 ..................................... ATAACTTAGACAGCGTGATATCTCCGGTATTGATAG 1448 37 100.0 36 ..................................... TGTTGTCAATAAATAAGTTATATTTATCATTCAAAA 1375 37 100.0 41 ..................................... TTATATGGAGTTTTTTTCAACTTTCCTTATTTTGCAAGTGT 1297 37 100.0 35 ..................................... ATTTTGCAAGTGTTTCAGCCATTTTTGGGTTCCGT 1225 37 100.0 35 ..................................... TGAGGAAATCCATCACACTAACTACCGTAAATCAG 1153 37 100.0 42 ..................................... GCGCATAACTACCCATTGGCACTGGGTTCATTCCAATCACTC 1074 37 100.0 38 ..................................... TCACCCGTAAAATCTACTGGCAAAAAAAATCTAGTTTC 999 37 100.0 41 ..................................... TGTGGGTATTGATCCGTCTGGTCAGGGTAAAGATTACACTG 921 37 100.0 41 ..................................... CTCGAGAAAAAACAGGGATTAGACGCGGTACGCTCTAATTT 843 37 100.0 39 ..................................... TTTGCAAGCATTGTCATACCAAGATTTGTCATTCTACTG 767 37 100.0 35 ..................................... CTGTAGTTACGTTAGCACCACCTCCCGGTAAAGGT 695 37 100.0 34 ..................................... GCGTGTCTGTGTACCCGTTGCGACCAAACCAGAG 624 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 56 37 100.0 37 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAAAATTGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : TAGCGGTAACTAACAACAGAGGTGTAATTGAATCTCGTTCAAATTTCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACACTGGAGATATTGTTATTATTGATACAAGCTTATCGCCAAGTAAAACTGTCAAAATTGGCGAGTTTGTTTCCCCAACCAATTAAATATGAAAGCAGGAAACGTAATTTACAAAGATTTTTAGGAATAAATAAACTCTGCGTAAAATTATTATGGTTTCCCTTGATAAAATATTGGATTAGACAATCGTTAACACCACAACAATTGAATCGAGAACAGCGCCGCTATTTTCATAAAAAACAATAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 311-2614 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHW01000105.1 Cylindrospermopsis raciborskii S10 NODE_190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 311 36 83.3 35 T.....CCG..AG....................... TTCTCAAAAGGACACCAGTGTCTTGTGAGTGAGTG G,A,T [313,316,322] 385 36 100.0 38 .................................... GATTTTATAAGGTCTCGTTTTTCTCCTATAGGAGATAG 459 36 100.0 37 .................................... CTGGATTTTCGTCGAGGAATCTTTCTACTAAGTCCCC 532 36 100.0 37 .................................... TTAAAAAAGCAGCAAGAGAAAACTACGAAAGAGGAAA 605 36 100.0 36 .................................... TCACGCGTTAAATCACGCGCGACACATATCTCTTTG 677 36 100.0 40 .................................... TATCTGTTATCCAGTGGAGAGCTGGAGGAATGGTTAGGGG 753 36 100.0 38 .................................... CCAAAATGCACTTCCTCCACCTGACGGAGAAGGTAGTT 827 36 100.0 33 .................................... GGCGTCGGTTAACTTACGCTTCTCTTTTGTCTT 896 36 100.0 36 .................................... AATGACTCAGACGACCCCGCGCTTAAATCAGTAAAA 968 36 100.0 44 .................................... TCGTCAGTCGCAATCCCGAAAGGATATCGCGTAGTTACCACAAA 1048 36 100.0 37 .................................... GGTTGAGGTTAAGGTTAATGAGCTCACTCCCCAGGAG 1121 36 100.0 47 .................................... TAACCTTTCAGAGGACACACTCATTGAGGAGGAGTTGAGACTCCTCT 1204 36 100.0 73 .................................... GGTGTGAAAGTTGTAATACGTCCAACCATCTACAGAACTCCATTTAGCTGGATGAAACTCACCATCAATCTTA 1313 36 100.0 38 .................................... TTCATAACCCTATTGAGGTACATCCTCAAGCTCAACAA 1387 36 100.0 38 .................................... ATCATAACAGCGTAGGATGAAAAGCGCGGAGTTGACGA 1461 36 100.0 39 .................................... TAAAGAACAAAAAAACCCCATCGAAGCTCTTGCTTAGAT 1536 36 100.0 37 .................................... CTACTCTTAATGGTATATTAAACGTTCAAGTAGTGTT 1609 36 100.0 37 .................................... TGTCACGTGGATCCACGTGACACTACGGGTGGCTAGC 1682 36 100.0 42 .................................... TTTAAGTGGGGTTGACTCTCGCGCTATAGCTGCATTGCGCAG 1760 36 100.0 37 .................................... AAGAACAATCTCTTATCCAACTCCGCTACTCCACTCT 1833 36 100.0 37 .................................... TTTCTAGGAGTTCAAGAAAGGTAAGAGTATCAATCAT 1906 36 100.0 38 .................................... TCTTCCGCTACCCCTTCAAAGTAGTTCCAGCCAATCTT 1980 36 97.2 35 ...................T................ AAACTATCTCCCGCTACCGTGCTGAAGCACGCCCT 2051 36 100.0 40 .................................... CCTTGTCCAAAGCTTCTGTGGGGGTATTCAGATTGTCCTG 2127 36 100.0 48 .................................... GCCCGTCCGGGTCACCTACCCGACCGATTACGGCAAGTATAAAACCGA 2211 36 100.0 34 .................................... CTGCATACGAACTGCTCAAGTGAAAACAAAAAGG 2281 36 100.0 41 .................................... GTTGGAGCTTTTTCACAATATAACGTGATTGAAGCTCGTCA 2358 36 100.0 37 .................................... GCAGTATTAGAGTCTGTTTTGTTTTCCTTATCTTCTA 2431 36 100.0 37 .................................... GATCAGTGCAGGAGGGGCATCCTGTACGTTAAATATT 2504 36 100.0 39 .................................... TCGCGTGAGCGAAAGTCGCAGCAGAGCAGGGTTCAAAAA 2579 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 31 36 99.4 40 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : AAAGTAAATGAAACTCGTTTTTTAGCCTTAGTTTTATTAATTGTGATTGCTTATAGTTTAGCCACTATGTACGGTCAACGGATGAAAAAATTAGGGATAGAGACTTATGCCGGACGGATTCAACAACATCAGGACAATTACCCAAGTCAGAGTGATTTTAGCTTTGCTGTTTACGGACAATTATGGATTTACGGCATGGAATTATGGGCTGATTTAGCTCTGACCTTAATCGGTCTCAAACCTCATAAACGCCTCTTTTTCCAGCGTGGCTTTCAGGCTCTATCCCTTATTAAACAAGCTGTTTGACCACT # Right flank : CCCTCCATTTTAAGCCCTTGCTCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 45499-42538 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHW01000003.1 Cylindrospermopsis raciborskii S10 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 45498 36 100.0 38 .................................... TACTTAGAATTAGAATTAATCAACTTTGCTCCTTTCGA 45424 36 100.0 39 .................................... TTTTTCAAAAGTCCTAGCAGAAGCGCAAGAGCGTTATGC 45349 36 100.0 36 .................................... GAGGAACGGGAGTATGTTTACTCAAAATCTCTTTTA 45277 36 100.0 39 .................................... TGATGTTAATCCCCTAAAAGGGGAAAGGATAAAAGAGAT 45202 36 100.0 37 .................................... TTTATGAAGTACTTTGAAGTAATCATGTTTATGTTTA 45129 36 100.0 38 .................................... CTGAAACTCCACTTTTTCAAGTAGAATCCATCGAGCAA 45055 36 100.0 37 .................................... TTTAAACTTTTTTGTAAAAGCACTACTCTTACTCGTT 44982 36 100.0 40 .................................... AACGCTAAATACAACAAGTAGCAACACTTGATTTTATAGT 44906 36 100.0 36 .................................... TAAAAAACAGATACCAGACATCACAACAGATAGTGT 44834 36 100.0 37 .................................... TCATGTAATTGGCAGTCTTTGGAAGACATTAGCTCAA 44761 36 100.0 39 .................................... TACTGATATGTTAACTTGGTATGTTATAGGACAAAAATA 44686 36 100.0 36 .................................... GCAATCTCATTCGTAAGCTTAACAGAAGTATGATCT 44614 36 100.0 38 .................................... CCCACAACCTTGCGGACGTCCTCTAAAATCTTAGAATC 44540 36 100.0 44 .................................... CTATGGAATAAAGCCCATAGTGGCGTGCAAGACCCATTACCAGC 44460 36 100.0 40 .................................... GGACATCTGTTCAAGGGCAACATTAGTGTTAAAAATTTAG 44384 36 100.0 36 .................................... TGGTGACAAACCTTAATGGGACGGAGCCCTTTACTA 44312 36 100.0 36 .................................... CTGCGGAGGAGAAGAAGACTTTTCAAAATAATTAAT 44240 36 100.0 39 .................................... AGCTTCTATCACATTATACTGTGAAAAAGCTCCACCGAA 44165 36 100.0 37 .................................... CACCTTGTAGAGCCCTAGCTTAGAAGCTAGAAGACCT 44092 36 100.0 38 .................................... AAAACCAAATCAGAAACCTGGTTTCTGTTAACCAGGCA 44018 36 100.0 35 .................................... AGAAATAGCGGGGTTCTAAAGAAGCGCAGCGGTAG 43947 36 100.0 35 .................................... AGTATTTTGCTAACCCGTTGGCGGGTTATACCTAA 43876 36 100.0 39 .................................... ATTATTACTATTTATTTGATAGTATGTATCCTTATAATG 43801 36 100.0 37 .................................... GAAAAAGTAATAGAGCTATAGAGGGTGGGGTAGGGGG 43728 36 100.0 35 .................................... AATAAAATTATGAGAGTTCCAACAATAATCAACGT 43657 36 100.0 35 .................................... GGCTTGGAAACTTGAGGATAAGGACTGGTACGAGA 43586 36 100.0 35 .................................... GAGATTGATTATTGAAGGTAGCCGCGCGGCTACCT 43515 36 100.0 32 .................................... CAATGGGAGAAGTTAGCAGTGGGGAATTTAAC 43447 36 100.0 37 .................................... TATTACAGCCCTGTACCCGCTGCTGGTACCTACTATA 43374 36 100.0 39 .................................... GAGTTACCTCAAGAAGTAACTCCTCTTGAGGTAACTCCT 43299 36 100.0 39 .................................... CTATATTTCCTATAACTCCACCTGTAATAGAGATTGATT 43224 36 100.0 37 .................................... TGAATAATAACCCCACCAACACCACCAACCCCAACCT 43151 36 100.0 36 .................................... GTATTAGATAATCTAGATGATCCTAACTCTAACTGC 43079 36 100.0 37 .................................... TAAGGCTAAAGTAGATAGTAAACTAAAGACTTACGAG 43006 36 100.0 34 .................................... GTCTATATTATTAGTTATTAGACTTATTAGCTCT 42936 36 100.0 39 .................................... TAAGTTAAACCATGCGAGGTAGAGAAAGACTAGTAGGGG 42861 36 100.0 36 .................................... GTAAAGAGATAAAGAAAAAACCCCATCTAAGCAAGG 42789 36 100.0 35 .................................... GTAATCCTCCACTTCGATCCCTCCGTTATTTGCCC 42718 36 100.0 36 .................................... TTGAGAGGGACGGCCCTCATAAAGCCTTCCTCTTTA 42646 36 100.0 37 .................................... CAGGCGCATTGAGGCGATCGCGCAGGACAATTTGAAT 42573 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 41 36 100.0 37 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCCTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : ACCTCCATTTTAAGCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAATTTTCTCTGTTTTTCACCCCTACCACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATTCCCTTCGTTAATCACTGAATTTACTGTCTTTAATATCACTTTAACCATTAATCAATAATCTCAATACTAATCCTTAATTAATCCTTCCATTTATCCTATTATAACTGATTCATGCTCAAATAACTGGTATTCAAAAACAAAAAATTTATTGTATATTTTATTTTTGCTTAGACTAAAGTAAACAAATATCATATAGATTAAAACTTTACCTAACATGAATACTCAGATAATAATAGAATTGGGTAATTGCACTATGGGTACTCCCACTCCCCAAGCTTCTATTTGAGGAATGGTATGTTTAGACAAAGGATAAAATCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 68347-67500 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHW01000211.1 Cylindrospermopsis raciborskii S10 NODE_454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 68346 36 100.0 35 .................................... TCTGGGCCTCAGGATCCCTAGATATAAACACTTCT 68275 36 100.0 38 .................................... CAGTAAACCCTAGCCCAGAACACCTCCGGTGGCATCGA 68201 36 100.0 39 .................................... CTTCTTTCAACTTGGACAAGGTTTGGAAATCCAACAGTT 68126 36 100.0 42 .................................... GGATTTCCCTGTGGTTCCATCTCATATTCCCTCGGAGGAAGA 68048 36 100.0 40 .................................... CCTTTAGTTCCAGTAAACGATAGCCCCAAAAACCTCCGGT 67972 36 100.0 34 .................................... AAGAAGTCCACCACTGGAAACTCTGCGTCTGCGA 67902 36 100.0 36 .................................... TTAATTTAAGGAAATTACAGCAGAACTCTTCTAGTT 67830 36 100.0 36 .................................... AGGGGAAAAAAATGACTACAACAAATAAAAATACAG 67758 36 100.0 40 .................................... TACCAGGATTTATGGGTAGTACTCATAAATCCTGAATAAT 67682 36 100.0 37 .................................... TTATTTTCCGTGCCTCTACCCGACAAAATAAATGTTC 67609 36 100.0 38 .................................... CGGGGTTGTTTCCGGTCTACCCGGGGTTGTTTCCGGTC 67535 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 12 36 100.0 38 GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : TAACTCCTTTGCTGCTATTAAAATTCCTCTGATTGTGACAATCATTGTTTTACTTCTAAGTACAGGAGTTGATTTCCTTGCTGGTTATATTGGTGCGAAACAAGCGGGTGCTAGTAAGTGGGGACAAATTGGCGCATTTGTGGGTTTACTGATGGGATTTTTTGGACTATTACCCGCTTTACCTTTTGGTGGACCATTATTAGGTATTCTCTTTGGACCTCTATTAGGAGCAATTGTGGGTGAGTTCCTTTACCAAAGAAGATTATGGCCTGCGGTGAAAGCTGGTATTGGAATCACTGTGGGAACGCTGGTGGGAAACTTGATTCAAGGTGTCCTAGCCATCAGCGCAGTCATAGTATTTTTATTGACAACTTGGTCCCAAGTATACTGACCCACTTACTCCTGCTATATTATGACGATGATTGCAACTCTTGAAGAATTGCCTTTTTCAAGGTCAAGACTATATCGCTGCAATCCTCTTAGTCCCATAGCATTAGATA # Right flank : CCCTCCATTTTAACCCCTTACCCTGACTGGTGTCAAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCTACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTACTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCCATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2000-182 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHW01000260.1 Cylindrospermopsis raciborskii S10 NODE_600, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 1999 36 100.0 40 .................................... AGACAAAACTATCAAGGCTGTCTATAGCTATTCTAAAGAT 1923 36 100.0 34 .................................... TTTTCAACAGGCTCACAACCATCAACTGTTACAG 1853 36 100.0 39 .................................... TAAAACATCAAAATGAGTTGTAAATTTCATAGTAATAAA 1778 36 100.0 34 .................................... GTAATGAGTTGTATTTAAATGCACAGTTTTTGAA 1708 36 100.0 50 .................................... TTCTTGCGCAGCTGCCCAACCCGCATTTTTCTGTTCTTGACTCAAATAGT 1622 36 100.0 39 .................................... AATATTTGATTTAATTGACAAATCTTTAAAGGAGAATAG 1547 36 100.0 39 .................................... AATATGGGTTTTTTACAGAAGGGTTTTCTATTGTTAGAT 1472 36 100.0 37 .................................... TTACTGTAGATGCTGTCGCAGTTACGGTAACCACGCA 1399 36 100.0 39 .................................... AAATATTGTCTCAAAAGTATTGACAAACCAAAAAGACTA 1324 36 100.0 39 .................................... TTTTTAATTATTGGTTTTGTTTTACTATCATACTTTATA 1249 36 100.0 37 .................................... GAAACAGTGCTAGTGGTTAATCGGAGGGTTAATACCA 1176 36 100.0 39 .................................... AGTTTCCAGTGATCATTATTCGTTTGTAAGGCAGAGTCT 1101 36 100.0 46 .................................... TGTTGCAAACAGTGTTATATGTAGGTAAGAAAAATGATGCTTATAG 1019 36 100.0 37 .................................... TGGAGAGTTTAAGCTCCACCAAGGCGGCGCGGTACAA 946 36 100.0 35 .................................... AAGGAAAGGCGTTCGATTTCCCCAACCACCCTCTT 875 36 100.0 38 .................................... GAGCTGCGCACCATATAACTTGGGGTCACTCCCAATTG 801 36 100.0 39 .................................... GATGGTATTTAGTTTACATGTCTTGTAAGTGTTATTTAC 726 36 100.0 35 .................................... CTAAAAGATCATGTATTGCGTTTCTCTCGTTTCTG 655 36 100.0 37 .................................... AAGTAATCGATGACTGACTCTAATGAGTCGAAGTCAC 582 36 100.0 37 .................................... TCTGGGCGTTTTAGCGTTTTAGTAATCGCTTGTTCTA 509 36 100.0 42 .................................... GGCTACAATTAACAGGAAGTTATGTAAATGGTGTATTAGGTC 431 36 100.0 34 .................................... CTGAGGCGTTGCAGCGTTATCGGGGAAGAGCTTA 361 36 100.0 37 .................................... TAAAAGGACAGAAAATAACAAATCTTTTTTGAATTTA 288 36 100.0 35 .................................... AGAAGAGGAGGAAATATACCCAAATGAACATTACA 217 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 25 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TTGTGTTTTTCAGTTTTATCACACAGGCGATCGCATTGCACTCCCTACGGGAGATCGGACCTTGTAAGTTGTGATTATAACTTTTATATCACTGAAGAAAAAATAAACTTCATATAGTTAGTGGGGGGAGATGAGATAGACTTATCCCAATTAGTGAATAACTATCTGTTGTCTATATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : CGTGCTTATAAGGATCAAAGTTACAAAGGAGTGACAGAGACCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 154-1071 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHW01000344.1 Cylindrospermopsis raciborskii S10 NODE_811, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 154 36 100.0 37 .................................... GTGCGGCTTGGTGTGAATATAGTTTACAATTAAAACA 227 36 100.0 37 .................................... GTGTTAGTGGGGTTGGTGTTGGTGGTCATGGTGTTGG 300 36 100.0 37 .................................... AGCCAAATGAACTCTGATTCTTGCTGCCTTTTAGTGA 373 36 100.0 36 .................................... ATCTTCAATTACAGTGCCAGTACCACATCCCATCAT 445 36 100.0 39 .................................... CATCGGGTTGACTTCCTAGGTCGTTGCCAACTATTTTCT 520 36 100.0 36 .................................... TAAATAGATCTCTACCCGCTCTTAAGGATGTGGATT 592 36 100.0 37 .................................... TTATTAAATTACTGTCTAGATGAAGCACGAGAAGTTT 665 36 100.0 36 .................................... CAAAAAAGACAATCAGTCCATCTTGTTTGATCACAA 737 36 100.0 39 .................................... TTCTTCGATGAATTTGTTCTCGTTTATGTTTTTACCAAC 812 36 100.0 36 .................................... ACTTCTTAACCCGCTCATACCCCCCTATTCCCCTTT 884 36 100.0 42 .................................... AAATTGGAAGAAGGAGTGGAAGTGGAAGAAGGAGTTTCCTCC 962 36 100.0 38 .................................... AAACCTATTGACAAGGGAAACTTGACATGGTATATTGA 1036 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 100.0 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GGATTTATGGCATGGAACTATGGGCTGATTTAGCTCTAAGCTTAATTAGTCTTAAACCTCATAAACGCCTCTTTTTCAAGCGTGGCTTTCAGGCTCTATCCCTTATGAAACAAGCTGTTTGACCACTTTGTCACCCGGTAAGGACAGAGACTCG # Right flank : GCATTCAACAAGCAGTCATAATGTTAGGAGGAATGATGGAAGGGCAAGCTCCTGATCCATATAGAGCATCTACTTTTTATAGGCTTAAAACCCTTGATTTACATTTTGTACATAAACAAAGTAAAGATTTTCTGTTCCCAACTATTAATATCTATGATTCTTTAGCTAAAGATTATAACACAAAATCTCAAGAGTATGTCACAAAGTTTGAGGAAAAAGTCTTTGAGTTTATGTCTCTAGAACCTAAACTCCCAGAGCCAAACTATAGTAAAGCACCAAAACTTGTAGAGCTTGAAGAAAGTTTACTTTCAGCTAAAATAGTAAAAACTCCTGGAATGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 11269-9313 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHW01000420.1 Cylindrospermopsis raciborskii S10 NODE_981, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 11268 36 100.0 37 .................................... TAAAGGTATTACTTTCATAAGAGGTATAGAGAGATTT 11195 36 100.0 37 .................................... CTAGTAGACCACGTAGTAAGTGTAGGTTGTAAATCGT 11122 36 100.0 42 .................................... AATGAAAGTTCCCATCGGGTTGACTTCCTAGGTCGTTGCCAA 11044 36 100.0 35 .................................... CAAGAACAGCATTATCCATGTCCATTTCATTTTCT 10973 36 100.0 42 .................................... ACCTCTTCAAGTATTTCCTCGATTTCACTGATACAACAGCGA 10895 36 100.0 39 .................................... GTGGTGTTGGTGGTCATGGTGTGGGGTTGGGAGTTGGTG 10820 36 100.0 40 .................................... TAAACGATAATAAACGATTAATACAAAAACAACAAATAAT 10744 36 100.0 41 .................................... AAAATATTTTCCAGTAAGTATTATTATTTTGAAGTGCTTCA 10667 36 100.0 37 .................................... GAAAATAGCACTTCTTTTTTGAATTTACTGTTTGTTT 10594 36 100.0 38 .................................... AAATCCTTGAAGGGAATGAATTTGTGCTAATCATTCCT 10520 36 100.0 39 .................................... GAATAGCCGGAAACAACCCGGGTAGAACGGGAATAGCCG 10445 36 100.0 38 .................................... AACAGTACAATTAGTTGTTTTGTACATTCTCTTGTTTT 10371 36 100.0 34 .................................... CAACGTAAATCGATTAACCCTTTTTTAACACAAT 10301 36 100.0 38 .................................... CCTCAAAATATTTTTCCTGGCTTTTTGAAACCAACTTT 10227 36 100.0 35 .................................... TGTTGGTGGGCATGGTGGTGTTGGTGGTGTTGGTA 10156 36 100.0 37 .................................... ATGAGTTCCAAGAAAGCATTTATGGTTGGGAAGTATA 10083 36 100.0 34 .................................... TTAAAAACGGCTTACGAATACAATAGCTTAACAA 10013 36 100.0 40 .................................... TATAGGAGCTAAAAGATATAATTTTTCAGAGTGTTCCCAT 9937 36 100.0 36 .................................... CCTCTTCCGTGAGGTTGATGAAATTCATTTTGGCAT 9865 36 100.0 37 .................................... TTTCATAGCTTCACTATCGCTTACTAGAAAGATTCCT 9792 36 100.0 38 .................................... AAGTGTAGTATCACATGATCCTCTTTCAAGATAATACA 9718 36 100.0 36 .................................... TATCGTATATACGATATTGGTCGTTATCTTCTTTTG 9646 36 100.0 42 .................................... AAGTAGAATCGAACACCACTGGTCGTTTGACCAGTGATTCTC 9568 36 100.0 39 .................................... CCAAGACAAATCTTTTAATTCATCTTGTCGACAGAAAGT 9493 36 100.0 38 .................................... AACCTCTGCATAGCAGAGACAGTCACAGAGGGGTTTGC 9419 36 100.0 35 .................................... CCGCTGGATTGTGGTGAAGAATGATAGAACTGCGG 9348 36 86.1 0 ........A.....................A..GCT | ========== ====== ====== ====== ==================================== ========================================== ================== 27 36 99.5 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : TAGATATAATTCCAGAGTATATAGCTGTATTGGTGACTAATTTATACATTTAGATTTACAGAGTAGGGTATGTTTTTAATATAGTTTAAGCTAAGCTGTTAGGAATGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : GTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATCGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCACACGATTCCTATATACAGAATGTACACAGTTATATCTCTTAATTCCAGAGTGAGCGTGCTCACACACAACTCACTGACGACTCAGTTCTCGATTCTCCTCCTTTTGCTGCTGTGTTAACTCCTTACCTTTCGGTTTCTTGTGTGGTAAATGGACATTGACAAATTCTTTCTCCAACCCATGAAAACCCAAATCTCCCTCTATTGCTACTTCATCAGGAATGTATTGCACTATCTCTGATTCATGGAGTAGCCGTTTGTCATGCACTTTACCTGCTCTGGTTTTCGTCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 714-1412 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJHW01000501.1 Cylindrospermopsis raciborskii S10 NODE_1248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 714 36 100.0 37 .................................... GCGATCGACCCGGACTGGCTCACTTCCGCTTCAAAAC 787 36 100.0 39 .................................... CGGCATCCCAGAGGAAGACCTTGCTGGGATTAGCATCAA 862 36 100.0 37 .................................... AATATCCTTTTGGAGATCCCAAATTTGTAACATTTGA 935 36 100.0 35 .................................... AGGCAAGCGAACTCTCCCTGCAAAAACCTCTGCAT 1006 36 100.0 40 .................................... TTTATAGAATTTATAACAGCCTTGGTGAAACTACCTGCTC 1082 36 100.0 35 .................................... CTTCAACAAGCCCATTTAGAAGATAATTTCTTATA 1153 36 100.0 36 .................................... TGATCTTTAAATCAGAGATTTGCTCAAATAAATCAA 1225 36 100.0 41 .................................... TTAAAATTGCTTATTTAACAAGGTTAAGACTTAGCGATGCT 1302 36 97.2 39 ..G................................. AAAAGGAAGTGCGTTGAGAGTTGGGTAATATAGCTTCAG 1377 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATAAAATATACTTTTAAAGTTTTGCACCCGGTGACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAAATTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAGGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGAGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : CACTCGGAGTTCCATAGCCCTTGGACACAATTGTATTGTTGACGTCGCTGTGGCAAATAACTGTATAATCGGGTATATACGTTGCCGAAAAGATGGAATATTTGGACTCTATGTCTACGACCTGCTCGTTTCCAAGCAATGGAGGGAAAAGGGACGAGGAAAACGTCTTATTGAAACTGCTGCTGCTGAGCAACCACGTACATGGGAACATTTTCTTGATGTCTGGGAAAATTAAACTCTTTCTCCATTGGCGATCGCATATCGAAACTCAGGGAGAATAACATACCACTTACTCCCAAATAGGATTTTAAGCACTCCCTATGGGAAATCGCATCTTATGGAGCGAATAAAACAACTTTTGAATATCCTATCTGTCAGGCGATCGCCCATCTTAGAACTCTCACTTCCTTACCCACATAAAACAACTACTCGAAACCCCTATACACAAGAGCGATCGCATCTCCTGGTGTTACCCCAAGAAATGCGATCGCCTAATAATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //