Array 1 34082-32808 **** Predicted by CRISPRDetect 2.4 *** >NC_000961.1 Pyrococcus horikoshii OT3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 34081 29 100.0 38 ............................. ACCTGCCTGCGTGATTTCTTTACTCAAGAAGTTCGTAA 34014 29 100.0 37 ............................. GTCATAGGTTCAACCTCATAACCCAGTGATTTAAGCT 33948 29 100.0 39 ............................. AAAGTGTTCTTGAGTTAGTAGCACTTAGGTATTCCCTAG 33880 29 100.0 37 ............................. GATAATCTGGCATGAGAACTTCATATCAACATCGTTC 33814 29 100.0 43 ............................. AAGCTGACATGTACAGTATGTTCTTCCAAGTTTCTGCTTTCAT 33742 29 100.0 39 ............................. AAGATATTCTGCAAACATTAATGCCTCTCTTCTTAACTC 33674 29 100.0 43 ............................. TCTCAACAATTCCACTAAAAACTCTAGCAATAACACTATTCCA 33602 29 100.0 39 ............................. ATGTCTTCTGTATAGCTGAATTTCCCTTGCTCCAATAGC 33534 29 100.0 39 ............................. AAGCTCTTTTATAACGTGTATCTCTTTCCCGTCTATAAG 33466 29 100.0 38 ............................. CTATATGTAACCATTGCCGTCGCGAAAGCCTCCCTTAC 33399 29 100.0 34 ............................. ATCACCTCGATACTAATTATGCACTCATAGTATT 33336 29 100.0 40 ............................. GAAGAATGCGTCCTTTTGTTCCTGATCCATCATCGCCAAA 33267 29 100.0 38 ............................. AAGGTGAGTAAGTGCGGGTTCTGCTCGAGGAATGTGAG 33200 29 100.0 37 ............................. AAATCAGGCTTACGTCTAAGCCAGCCGATGGCTATGA 33134 29 100.0 38 ............................. TTGAGAATCCTCGTCTCTTATGAAATCCCTGACTTCTT 33067 29 100.0 38 ............................. ATGTACCTGCTTTTTGCTCTTTCTAGTAATGCCCTAGC 33000 29 100.0 38 ............................. TTGGTCATCTTGTGGTTCGCTTGTATAAAGATAATCAC 32933 29 89.7 68 ..............T.G...........C AAACCTTTTCTGCTGTATTACATGCTATGTCCCAGACTTCCTTCGAGCTATTCACCCCCTTGATTCTA 32836 28 89.7 0 ........................-..GT | A [32818] ========== ====== ====== ====== ============================= ==================================================================== ================== 19 29 98.9 40 GTTTCCGTAGAACTAAATAGTGTGGAAAG # Left flank : TGTTACGGGTTTTTGTTTTCTCTTTTTGTTTTCTCTTGTTTTTGGTTTAATACTCTGCTCGGGTCTGAATTTCGCAACAGGGTGTTTTTACTCCCTTGTTTTTAGTTTAATCCTCTCATTGGGATTTTTGTTTTTTGTTTACCACTATAGTGGTAATTTCTTGTCAATTGTGTTCATTTGGAATTCGATTCTTCTCAAGGCTTTATTTTGACTTTGAAGGATTTTGACACCTTAATTGGATAGTCTAGGAGTCTTGTTGGGGGTTTGTTTTTAAAGGCTTTTAGTGTTAGCGTGTTAAATTAACTTAATTTAATTTCGATCTCTCCTTTCCAGTTGGGTTACTTGGATTTTTGGTTGATAGTTTGTTTGGGCTTTCTCGTGACTTCTAGATTTTTGTGTCAGGTTTATAAATGAAGTCCAGTATTACCGGTCTTCACAGTGAGTAAATTATATAAACCTTGAGAGGCTTTTATTAAACGAATAAAGCAAAAAACCCAAAA # Right flank : ACTGGCCCAGTGATTCTCCTAAGGTGTTGAATGTGGAGGCATATACTATTTAAGGCACTTGGACAAAATTTCCATTGGTGAAAAAGGTGAAGAGCTTGTTCCTTCTTGTCCTGGGAAATACGGAAATAAGCACAATTCCTGGGATAAGCGTTGCTGGAGCAACACCTGAGTTGACTAAAATAACCCCTGTTGCCGATGCGGAATACCTCTTTTATGAGAAACCCCTGACGATAGATACCATTCCCGTGACCCCAGAAGGACATCCAACTCCTGCTATAATAACCAAGGCCGCTAGAGAACTCTCAAATTTTCCGATACTCGTTGTTAGAGGGGGAACTTATCTGGCCCCTCTAATTCCTCACGTTCACATAAGTAATGTAGTTGGAAGGGATTTCAGGAGGGAACCCGCTCTCCCAGAGGTTGAGGTTATAATTGAGAGGGCTAAGTTACTTGGTAAAGAACTTGAAAAAATTGCAAATGAGATCGTCATAGGAGAATCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTAAATAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 150418-152173 **** Predicted by CRISPRDetect 2.4 *** >NC_000961.1 Pyrococcus horikoshii OT3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 150418 29 100.0 38 ............................. TAGAGCTCGAAGTAGACTTTAACCCCAGCGGTTCCACT 150485 29 100.0 38 ............................. AGGTCTGGCTCCTCATCCTCAGGAGGCTTCTTAAATGG 150552 29 100.0 43 ............................. GACTTGAAGAAGGATGTAATAACATATGATGACTTCATAGAAG 150624 29 100.0 47 ............................. ACTAAGTTGCTAACTAGAGTATTGCTCATCCAAGAATCATACTTCAA 150700 29 100.0 39 ............................. TATCTGAAGCACTATTGCCAACAAATTCTGGAACAATCC 150768 29 100.0 38 ............................. TTGATGACCTTGCCCATTTAGAGTATGACCCAGAAACT 150835 29 100.0 36 ............................. CTGATTTATACGGGTTCTCTGGTTTTTCTACCTCAA 150900 29 100.0 38 ............................. ACTTTCACGAAGACATCAGGGTTTCTCCGATTCCCTCT 150967 29 100.0 42 ............................. ACGTCAATTCCATAGCCCAAATTCTCAGCTACGTCGAATTCA 151038 29 100.0 40 ............................. GGCGTGGAAACATCCCAGCGAACGGTTACGACGACATAAC 151107 29 100.0 42 ............................. AGCGTCCAGCCACTTGCTGGAACATTTATTGTTTCTAGCTCG 151178 29 100.0 49 ............................. ACAGTCGTATACAATCCTTGCAGACATGTGCCCGCAGATGAACTTTCCA 151256 29 100.0 38 ............................. CATAAAATCTAATAAGGATATCTGTAGACATCAAGCGA 151323 29 100.0 51 ............................. TCAACCTTGTCATCAGCAACCGTGTAGGTTATTGTGTACTTTGGGGTTTCC 151403 29 100.0 37 ............................. AAACTGTCGAGGCCTGCGTTTTGCAGGAACAACCCAA 151469 29 100.0 39 ............................. ATAGTAGCATTACTACGACATACTCTGGGCTCTCTGAAT 151537 29 100.0 37 ............................. CTCAGCTCTTCTGGGGTTATGACGCCTCCCTCTATAG 151603 29 100.0 42 ............................. AAGAAGGGTAGGAGGAAGAGGAGAGAGGAGTTCTTTGGCTGG 151674 29 100.0 39 ............................. ATTAATCCCGTGTTGTCAAGTACTGCGATGCGGAAGTCT 151742 29 100.0 39 ............................. TGTAATGGTTATTTTTCCTCCAAACTCCGTACCAAACTT 151810 29 93.1 37 ..............A.A............ TTCTTTAGGCTCTGATAATCTCTTTCTCTCTTAAATG 151876 29 93.1 38 ..............A.A............ ACTTCGCCAATTGCCGACGCCCTTTCCGACACTTGCCT 151943 29 96.6 38 ..............C.............. ACCTCTGGGGTATGACTTGCCACAACAACACCACCTCC 152010 29 100.0 39 ............................. AGAACCAGTAGCCTGTTAATGAGCGGTGCTGGCAGCTGG 152078 29 100.0 38 ............................. CCAAACTCTTCCTTGTTTTCAAGCTCCTTCTCAATGGT 152145 29 79.3 0 ..............A.A.....CCT...T | ========== ====== ====== ====== ============================= =================================================== ================== 26 29 98.5 40 GTTTCCGTAGAACTTAGTAGTGTGGAAAG # Left flank : TGTTACGGGTTTTTGTTTTCTCTTTTTGTTTTCTCTTGTTTTTGGTTTAATACCCTGCTCGGGTCTAGATTCCATAACAGGGTGTTTTTACTCCCTTGTTTTTAGTTTAATCCTCTCGTTAGTCTTTTTGTTTTTTGTTTACCACTATAGTGGTAATTTCTTGTCAATTGTATTCATTTGGAATTCGAGTTATCTTAACGCTTTATTTTAACTTTGAAGGATTTTGACCCCTTAATTGGATGGTCTAGGAGTCTTGTTAGGAGTTTGTTTTTAAAGGCTTTTAGTGTTAGCGTGTTAAATTGGCTTAATTTAATTTCGATCTCTCCTTTCCAGTTAAATTGAGAGGATTTTTGCTTAATAACTTGTTTGGGCTTTCTCGTGACTTCTAGATTTTTGTGTTAGGTTTATAAATGAAGTCCAGTATTACCGGTTCCCACAGTGAGTAAATTATATAAACTTTGAGAGGCTTTTATTAAACGAATAAAGCAAAAAACCCAAAA # Right flank : TCATAATTTAGGTGACCAGGGATGAAGTCTCCGATATATATTACCCAACCTGGTATCCTTGAAAGGAAGGCAAATACCCTGTTCTTTGTTAACGAAGAGATGAAAAGAGCCCTGCCAATAAACACGATAAGTGAAATTCATTGCTTTGCGCCTGTAACCCTCACGAGTGGAGCAATAAAGTTGTTAAGTGATAACGATGTTCCTGTCCACTTTTATAACAAGTACGGTTATTATAGAGGCTCTTACTTGCCGGCCGAATCCCAGATAAGTGGTTCTATAGTTGTCGCCCAGGCTTCTCATTATATTGACAATGAAAAGAGGCTTTACATAGCAAGGGAAATACTTGAGGGGACTAGGGCTTCTATGATCTCCCTTTTAAAATCTCAAAGGGCTGAATATAAGGATCTAGCAGACATAGATCTTAAAGGAGAGTCGATAGAGGAATTAATGGGCATCGAGAGCCAGCTGTGGAAAACATTTTATGCCCACTTCTCTCACCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTTAGTAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 637738-638918 **** Predicted by CRISPRDetect 2.4 *** >NC_000961.1 Pyrococcus horikoshii OT3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 637738 30 100.0 39 .............................. TAACCTTAAGCGGGAGGGAACTTGTTGAGTTCATAAGGG 637807 30 100.0 38 .............................. ACGACGTAATCAACCTCGAAAAGGGTTCCGCACCTGTT 637875 30 100.0 38 .............................. CGTGCTCTGGGTACGCTGTTGCTACGATGTGTGCAGGG 637943 30 100.0 37 .............................. TATAGATGTCGTCAAATCTATATAGATGCCGGTGGAC 638010 30 100.0 37 .............................. GAGAGAAACGACAGGCTTACCTCCACTTTCAAGCCAT 638077 30 100.0 37 .............................. TCAAGTTGATAAAATCATTGCCTGCTCAATATCTTTT 638144 30 100.0 37 .............................. AGCTCGGAAGAGGGCAGGATAGGAAAGTATGACGCAA 638211 30 100.0 37 .............................. TGTGTTGCATCGGACATGTTCAGGTATGAAATCCTTC 638278 30 100.0 37 .............................. TTCTTCCTTTCCAGCTCGTAACCCAGGGATTCGAGCC 638345 30 100.0 38 .............................. CGGCGAGCTAGATAAGAGGGAGGAGGACGCATTTAGAG 638413 30 100.0 38 .............................. ACGCTAACGTCAGCATGGAAGACGTTTTGAAGGCTATA 638481 30 100.0 36 .............................. AACTTCGTACTCGACTAGCTCCTCCTCATCGTCCTC 638547 30 100.0 38 .............................. ATTTAAGATAGACGGGAGAGTACCCATGTAGCTGTCAA 638615 30 100.0 38 .............................. GAGTTCTATGTCGACTTTCACACTTGGGTTCCTTCTGT 638683 30 100.0 42 .............................. AAGCTTGAGGTTGTTCATTATAACGTGAAATGGGATGATGTT 638755 30 100.0 36 .............................. TCTGGAAGGAAGGCAATACCAAAATCAGAGGTTGAG 638821 30 100.0 38 .............................. GAGGTTATCGGACCAGGAGTCAAGCACCCAGGAGTTTG 638889 30 90.0 0 .......C.......A..T........... | ========== ====== ====== ====== ============================== ========================================== ================== 18 30 99.4 38 GTTCCAATAAGACTATAAGAGAATTGAAAG # Left flank : TTTTTGCTTTTTAATTTTGTTTGAGCTTAATTTTTGAAATAAAGTCCTTTGAGGAGTTAGGGTTTGATTTAGTAACCCAAAGTTACTATTTACTTTGTGTTACAATTTTGTTGTTAAATTGTGACGAAGATTTTTCGAAAATTCTTGAATAGAATGCTAAAGATAAATTTTTAGAGAAGGTTTGAGAGATTCTGTTGGATTCTTGCAAAAAGTTAGAAGTCTGATTAGTTAAGCTAGTTAAGTCTTTTCCTGGGATAGGGTGTGATAAGGATAAATTTTTCCCAGGGTGCTCTTGGGAGTATTATTAATTTAAAGCTCTAGGTAGGGTTAAATTTGTTTATAAAGTAGGTTCCTTGGTCTGACGTTGAAGCCAACGTGATAGTCGAGACCGAGAAATTTGTTTATAAAGTAGGTTCCTTGATAAGTCTAACACCCCGTAAGCCTTATAAATTCGAGTGATGTAGTCACTCCGTAGGAGAATTAGGACGAAAAAGCTCCCT # Right flank : GAAGCATATCAAGGCTTGAAATGCTGATTACAACCTCTTCATGCTTCTTTATTGTTGAAGATTGTTACTCAATCTACTGTCATAATATTAGCTTTCTTTTCCAAAACAAGATTTCATAAATATTTCTCTACAACTCTAAGCTTCCTTATAACATCCCAGGGATTTTCACCAAAAACGTAAACGCAGGGTTCCACGCCATGCCTTCCTGGATCGATAACTATGTCAGGTTCTCCCATCCCAAAAATTTTAGCTATCTCATTTTCAACCTCCTCTATTGACTTTAAGTTCCTGGGAAGGTAGATAACTCTTAATCCAGCCTTTTTTACCGCCTCCTCAACGTCTTTCCCGAATCTAATGTTAATGACTGACCTAATCTTTGGGTTGTATCTTGATATCTTTATGAGCAACTTAGCGGTGTGCTTGCTAGCTCCGAACTCAGGTGGCATAGCGTAGGGCTTATCCTTAATCACGGTGATCCTCCCAGGAACTGCAGCAACATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTATAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 938311-933763 **** Predicted by CRISPRDetect 2.4 *** >NC_000961.1 Pyrococcus horikoshii OT3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================== ================== 938310 29 100.0 39 ............................. TACAGGCTCCTGGGGATTGCTGAGAAGGGCAGTCCTGGG 938242 29 100.0 37 ............................. AAAGGAGGTGGAATTGCATGGAGCAGAAACTTAATTT 938176 29 100.0 37 ............................. CGTCGTGTCGGCTCCCTCAACGTCTAAGAAAGCAACG 938110 29 100.0 39 ............................. CGGTTTCTTGCATACCAGATGAAATCCGACTCGAAATAC 938042 29 100.0 39 ............................. GTTGATACTGACGCTTGACTTCAAAAACACTGTCTACAA 937974 29 100.0 39 ............................. GTAAACCTCCACAACAAGTTTCCCCTGTCCTTTTACAGC 937906 29 100.0 37 ............................. TTTAACGTCCAGACGAGGTGATAAAAATGGAGTTGTT 937840 29 100.0 36 ............................. TTCTTTCCAACTTATCATCATCAGGAACAATGTCTT 937775 29 100.0 37 ............................. CAATTCCCCCAGGAGGCAAGGTAGTTGCGGAAATCGC 937709 29 100.0 38 ............................. ATTCTGATTACTACAGCCCTGTAGGTTCCCCTTTCTGG 937642 29 100.0 38 ............................. CTGGTAATTTCCAGTACTCTGACCATTCTATCACTTCG 937575 29 100.0 38 ............................. TCATAAGGGGGGCCAATGTTACTTAGTGACCCTATCCG 937508 29 100.0 41 ............................. ATACTGGGCGTGTGAGTGTGTTAGCGCGTCAACATAACAGT 937438 29 100.0 37 ............................. AAGACTGTTAAGGTACTCCACGCCATCGAAGCATTTT 937372 29 100.0 37 ............................. CCGGTTGCCTCATCCCTTACTGGGATTACCCAAACGT 937306 29 100.0 37 ............................. TCCCCAGGCCTTACAATGTATAAGCCATCACCCCTTC 937240 29 100.0 37 ............................. GGGAACTCCTCCCAGAGCAGGCAAGGGAGGAGGCTGG 937174 29 100.0 36 ............................. AAAGCTATGCCTATTTGCCTATTAGATGTCTTTGAG 937109 29 100.0 40 ............................. TCTTCCTGGTGCCGAAAGACGGTAGGACGCTGGATAATAT 937040 29 100.0 41 ............................. AAAAGCCTTATCCAGTTCCCCAGCCGTACCCAGTTCCCAAG 936970 29 100.0 40 ............................. GAACTACTCTTGGCTTGCCTGAGCTTCTGCACAGTGTCCG 936901 29 100.0 37 ............................. TAAGCAGTCTCCACACCCTCCTCCTCTATGATTCTCT 936835 29 100.0 36 ............................. CTCGTCATCGCTGATGTACTGCTCCTCTTTTACTAT 936770 29 100.0 38 ............................. AACTCCCAATAGATGACTTTCCTGTCAATGTATTTCTT 936703 29 100.0 37 ............................. TTTTGCAAGGAGCTTCCCCATCCTCCCCATCAATGAG 936637 29 100.0 38 ............................. GCACTATCCATCCTGTCCGCAGTATCAAGCCCCAGCTT 936570 29 100.0 37 ............................. TTTTTAGAACAATCTTCATCCCCTTCACCTCCTCCTT 936504 29 100.0 37 ............................. AAGGCAACCTTTGCGATAACCCTGTACTTAGTCACGT 936438 29 100.0 36 ............................. TATTATCCCTAGAAGAGCCGGCAGAAGTAGCTAGAG 936373 29 100.0 36 ............................. TTATGTGGCTTGCTCCTGATAGTGTCAATGTAACAT 936308 29 100.0 43 ............................. ACGGAAACGTTTATTATCCAACATTATTTGTAGAGGTGTTCCA 936236 29 100.0 40 ............................. AGTAATCGTAGAATGCCTTTGCGTCTTTGAGGCCGATAGG 936167 29 100.0 41 ............................. AGGAGATAAAGCATAGTTGCAGGTTCGGCATTGAATGCAGC 936097 29 100.0 36 ............................. AGACACGGAAGCTACCCTTCTGTGCTACGGTAACAC 936032 29 100.0 47 ............................. ATCGTGTATCCCATTCCTCTTAATTTCTGGACTATTCTCTCGTCAAG 935956 29 100.0 45 ............................. TGGAAAGACGCCTGCTGGACTGGTGCAAGGCTCGGCGAAGTCCTA 935882 29 100.0 38 ............................. GGCGGTGATAAGAGAAAGAGGGAGACGGAATGAAGTAG 935815 29 100.0 39 ............................. GACTTTATGCCGACCTCCTTAACCATGCCGTTCGCTAAT 935747 29 100.0 36 ............................. TACTTTAATTGCCGTGGTGAGGAAGGGCGACAGCTT 935682 29 100.0 36 ............................. AAGTAGAACCAAGCCACAAGCACTCCACCGAACCAG 935617 29 100.0 36 ............................. AGTAATCTTAACCGCCAGAACTTATAACCCTTTTCA 935552 29 100.0 40 ............................. ATTGTATATACTTCACGAGCTCGGAAGGTAAAACTTCTCT 935483 29 100.0 48 ............................. AGTTTAAAGAAGAACTGTAAGGAACTTTAATGTAATCATCAACCCCGT 935406 29 100.0 36 ............................. ACGGGAAGAGTTTACGAGTGAGGTAATAACGTACTT 935341 29 100.0 41 ............................. AACTCCTTCCTAACAGTCCCAGGACTAATCCCGAGCTCCGT 935271 29 100.0 42 ............................. AACTTTCTGGCAAGCACATACACCTCATAGGAGGGATCTACG 935200 29 100.0 38 ............................. ATTATCTTTTCCCACTCCGACTTTTCAGGCTTCTTGGC 935133 29 100.0 49 ............................. TTGAAGAGTTGCCCAGACTACCCCTCACCGGAGAATTCCCGATTGTCAA 935055 29 100.0 37 ............................. CAATTACTACCCTCATCCTTCACCACCCCCAACAAAA 934989 29 100.0 38 ............................. CACTTTCCGTTCCCTCTCTTATTCCTATTTTATATTAT 934922 29 96.6 36 ............................C TACAAAACAAGAGCTGTTGCTGGCTCCGTATTGTGG 934857 29 89.7 40 ..............T.G...........C GGGAGAGTAAGGTCATCAACCAATGCCCAATATACAACTA 934788 29 86.2 40 ..............T.GG..........C TGTACCCTACTGCTGTGTACATTGCCAGCCTTGCTAGTAG 934719 29 89.7 42 ..............T.G...........C GTACAAGGAAGGGTGGGAATGGGCTCCTGGAGACGGCTCCTT 934648 29 89.7 39 ..............T.G...........C CTGTTCAAGTCCACTATTGACATTTCTGAAACAATTTCT 934580 29 89.7 42 ..............T.G...........C TACTCGTTCTCATCCGCTCTGCATATCACAACTTTCCCTCTA 934509 29 89.7 47 ..............T.G...........C AAAACACTACCAACTTTCCTGCAGTCTCCAGCCATTCTTCTGCAAGG 934433 29 89.7 40 ..............T.G...........C ATGTGAATAATAGAAAGGTGATCCACATGCCCTGCAGACC 934364 29 96.6 38 ............................C CATGGCTGGGTAGATTTATACTAGACAAGGCAATTGAG 934297 29 89.7 37 ..............T.G...........C GGAAACTCTCCAATCTCTTGGATTTCCCTAGCATTTT 934231 29 96.6 58 ............................C CTACTCTGCCACTCCTCGTCCGCCATAACCACCCCATTCGCTGACCTATAATAACAAA 934144 29 96.6 46 ............................C AGCTCCCTAAGTAACTCTTTTGCCTGTTCTAAAAGTTCCCAAAGAG 934069 29 96.6 41 ............................C GGAATGCTCACCCGCTCGGGCGTGGCTCCATAATTCGTCGC 933999 29 96.6 37 ............................C TAGTAGGGGAAGGTTTTTATGGTCTCTACTCCTATAT 933933 29 100.0 43 ............................. AGGAAAGACTATGGAAGTTGCTCCCAACTGCTCGGCAAACTGT 933861 29 100.0 41 ............................. CCGTTGAACCTGTAGACGCCATTCTCGTAGTAGAGGACTTC 933791 29 89.7 0 ..........G..........A..A.... | ========== ====== ====== ====== ============================= ========================================================== ================== 67 29 98.3 39 GTTTCCGTAGAACTAAATAGTGTGGAAAG # Left flank : TGTTACGGGTTTTTGTTTTCTCTTTTTGTTTTCTCTTGTTTTTGGTTTAATACCCTGCTCGGGTCTAGATTCCATAATTAAGGGTTCTTAATGTCTTGTTTTTAGTTTAATTCTCTCATTGGGATTTTTGTTTTCTGTTTACCATCATAGTGGTAATTTCTTGTCAATTGTATTCATTTGGAATTCGAGTTATCTTAACGCTTTATTTTAACTTTGAAGTGTTTTAACCCCTTAATTGGATAGTCTAGGAGTCTTGTTAAGGGCTTATTTTTGAAGGATTTTAGTGTTAGTGAGTTAAATTAATTTAACTTAGTTTCGATCTCTCTTTTCCAGTTGAATTGAGAGGATTTTTGGTTGATGGTTTATTCGAGGGTTCTCGTGACTTCTAGATTTTTGTGTCAGGTTTATAAATGAAGTCCAGTATTACCGGTTCCCACAGTGAGTAAATTATATAAACTTTGAGGAGACTTTATTAAACGAATAAAGCAAAAAACCCAAAA # Right flank : CAACAGTCTTATAGTAGTGGGATTTCTTGAGAATAAAGCCCTCTAACCCGCGCATTTCATTCTAGACTGGGCTTTAATGCAAATACTCCCAGGGCCTCTTGAACCCTCCTCACTTTCATGAATCCTACCCTCCTCAACCTTTCCATCACTCCCTTCTGAAGGTCTAACCCCCTGTACCTCTTCCCAGGGTTACCAACGTAATGGAACAATCTACCCCCTGGCTTTAAGACCCGAAACATTTCCATATAGAATTCTTCACTGTAGAGTTCGCCGGCTAGTGAGAACCTGGGTGGGTCGTGAATTATAACGTCAAAAGACTCATCTTCAAACTTCTTAATTAAATCAAAAGAATCTCCTTGTAAAATCTTTATTTTTGGAGATTCAAAGAGTTCCCTACTCCACGGATTTATCTTAGCTAGTTCAATTACGTTGGGATCTTTCTCTATCGTTATTACTCTCGCTCCCCTTTTAGCCGATTCTATAGCTGTATACCCTAGACC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTAAATAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 5 994360-994785 **** Predicted by CRISPRDetect 2.4 *** >NC_000961.1 Pyrococcus horikoshii OT3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 994360 30 100.0 36 .............................. TTCTGGAGTGCAAAGTTTGGAAAAGGCTTGAATGGT 994426 30 100.0 33 .............................. AGGCTTTTATTGAGCGTTGGTTTGTTATTTTTA 994489 30 100.0 37 .............................. CAGTTTAAGCTTAACCTCCCACCTGTGAACGTTGAGA 994556 30 96.7 37 .....................G........ TTCACGGCTGGTTGGAGGGTACTAGTCTATGATATGC 994623 30 100.0 37 .............................. TGGAGCGATGGCTCTCGCACTCGGTCTCTTGTTCAGC 994690 30 100.0 36 .............................. CATAGCTAGGAATCTTGGCTTTCTCTGGAGAAGGAG 994756 30 90.0 0 ..................A.........TT | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.1 36 GTTCCAATAAGACTAAAATAGAATTGAAAC # Left flank : GTAAACAATAATTTAGGTGTGATTTCTAAAAATTTTCAATATATATGCAAATCAGAATATATGCTATTTTGGCTTCTGTTTTCGGATGAATTCCAAAAATATTCCCTCAGAAAAGTTATGGCATATTTAGTAATTGAAAGTTATTAAATAACGAATTGGAACATATCTATCTTTATATTATTACGAAAATTTTTCGAAAATTATTCTATTAACCAAATAGCGGAAAAATCCAAGATATCTTAGCTATCATTGTGTCATTTTTAATTTCTACAATGATTACCACTTAAATCTTAATTATCTCTTAATAATATAACTTTGCATTTAAAATTAAAAGTTTAAAGAGAACGCCATGTTAGGCCGTTTTAAGATGTATAGCCCCCAATATCGTCTCAATTTATTACTACATTATGAGCAGTCAAAAGTAGCAGGATACCCAAAAGTCTTATAAAATTTGAGTGATATAGTAACTCCAGTAGAGAAATAAAGCAAAATTGGCTCCT # Right flank : TGAAAGGCAAACAGAGAGGCATAAGCACTAACAACTCTCTCAATCTCAAACGGCCCTCCAGAACGGATCTTCCTTTGCCTTTACTTGGGCTATCATCTTCAAGGCCTTAATATCTGTATCCTCCAGGACATCCCTAAGATGCTTCAATAGTATTATTGCATCATCCCTGCTTAAGTCAACGTACAGAGTTTCTCCTGGATGAATATGCCTTCCAACTATAGCCCCCTCTATTGCTATTGCAACTGCTTGTCCCTTTCTAGCTTCCTGGAGAAATTCATCTCTGCTCTTTATTGACCTTATAGTTCCAACCTTTTGGCCGTTCTGCTTTATCAGCGTAACACCTGGCTTTATTCTTCCCTCCAAAACTTCAATTCCAACTATTGCTGGATTACTTCTTCTGAAAACGTACCTCTCATCCGGATACAATTTTATTACACCAGGGAACGTCACCTTTGCAAGTAACTCTCTCTTCCTCTTCTCCTCTTCCTCTTTTATCCAAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 1118971-1117802 **** Predicted by CRISPRDetect 2.4 *** >NC_000961.1 Pyrococcus horikoshii OT3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1118970 30 100.0 37 .............................. GTTTCTGCTGGAGAAATAATTCGTTCAGAGGTTGTGG 1118903 30 100.0 37 .............................. GCTTGTCCATTTGTAGAGGCACGTGGAATTGAGAAGT 1118836 30 100.0 37 .............................. ACAGGATACGGGACACATAAAGGTCGTGGACTGGATA 1118769 30 100.0 37 .............................. TACTCGGTGTGAAGTCCGTAAATCTTATGACATCCAA 1118702 30 100.0 36 .............................. AGCGTCATTCACAAACTGGTTCAGCGTATATAATAT 1118636 30 100.0 37 .............................. ACGAACAGGTTCTCCTGGTACGTGAAGCCTGCGGATG 1118569 30 100.0 37 .............................. CTTTATGAGCTCGCTCAGTAGAAACTTCAGTTCATCC 1118502 30 100.0 39 .............................. GACATTTTTGCTGAGGTTGAACTTGTCTTTTAACCCCAG 1118433 30 100.0 36 .............................. GGGATAGGTTCTTTAGTTGTTCCTTGATTTGTTCTA 1118367 30 100.0 37 .............................. ACAAGAGTGGCAGGTTGGGGCTAATGAACTAAGAATC 1118300 30 100.0 39 .............................. AGGGCTGGACTATCAAGGAGATGGAGTGCTTGGTGGCGA 1118231 30 100.0 35 .............................. AAGCATAGTCATAATCGCGCTCCAATTGGGCTACT 1118166 30 100.0 35 .............................. TTAAAAGTGGAACATCATCGCCAGACCATGACCAC 1118101 30 100.0 37 .............................. CTGACTGGGCAGCTGCACCTGGAAAGGCAGGGGCTGC 1118034 30 100.0 37 .............................. AAATTGTGATTGATATTGCTGGCGATATAGGAAGTTT 1117967 30 100.0 36 .............................. TCACTCACGACGTAACTGCAGGAACCTCATACGATT 1117901 30 100.0 37 .............................. ATATTGGGACATACTCACTGCCCACTTCTATATACTC 1117834 30 96.7 0 ..........................C... | GT,A [1117805,1117809] ========== ====== ====== ====== ============================== ======================================= ================== 18 30 99.8 37 GTTCCAATAAGACTAAAATAGAATTGAAAG # Left flank : ACAACCACTATATACATAACAATGCACCGAAAATTATTCGATATAAGATGTTATAATCCTTTTCATCGCATAAAGGAATTAGATAGTTTTAATGAATGTACTCTTCTCTCTCGCTTGGCATGGTATGTTTACTAACTACTTGTTATTATTTTGCAAAAAGTTACAAAATAAATAGTATTTTATCACGAAAAAATTTCAAAAATAAGAAGTTAAGTTTATGAGATCGGAAAACTCTAAAAAATCTGTAATTATCTGACCATTTTTAGAATATTGGTTTTTAAACACTAAATATGAAGAGCTGAGTGTTATGGTCTTGTAGTGTTCCAATTAATAGAATTAAATACTCCTCGTAGAAAGGAAAATATGAGTAAGGAAATTTCCCTCAATCCTCTTCTTAATCACTACAAATATAAAGTTATAGTAAAGGGAATGCCCAAAAGTCTTATAAAATTTGAGTAATATAGTAACTCTAGTAGAGAAATAAAGCAAAATTGGCTCCT # Right flank : ATAAAATATAAAGAGCTCTAGATCTTCTTATTTCCTAGGAATATCTTGGCCTTTCCGTTTTTAGCAAGCCATTTTATGAGTTCCCTTGCAAACTCTAACTTCTTTCTCTTTTCCTCCCAGGCTTCCACATGCTTAGTAAGCCAGGGTTTACTCCACTTGCCAACTTTTCCAGAAAAATCAAAGCCCAGGAGAATTATCTCTTTGGCTCCTAGCTCCTCTGCGAGGAAAGCGGCCCTATCACCATCTGTAAAGCCTCCAAAGTTATATATTATATCCAAGGGTTTTGTCTGACAAGTTCCTAAGACTAAGGGGAAGTTAGTAACTATAGGTAATTTGTCAATATTATCCCCATGAGCATGGACAACCATCACGGCCTTCTTTGAAGCCTCTAGCAAATCTCTTATCCTACCGTCCAGATCTGTAACAACAATATCTGGAATTATCCCATTTTTCAAAAGAGCTGAGGTCGCTCCATCTGCCGCTATCTTTGTTCCATCTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //