Array 1 28762-27573 **** Predicted by CRISPRDetect 2.4 *** >NZ_QISG01000005.1 Cronobacter sakazakii strain CS-42 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28761 29 93.1 32 .T..........C................ CGAGAGGTAGTAAGCAGCTTCTGTAAGCTCAT 28700 29 93.1 32 .T..........C................ CCCGCACCAGTTCTTACAACCGAGGGACGCCT 28639 29 93.1 32 .T..........C................ GAAACAGCCAATCAATGATGCCTACATCCGGT 28578 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 28517 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 28456 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 28395 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 28333 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 28272 29 100.0 32 ............................. TGAAGTTATCATGCCAACGCCATCTTGACGAT 28211 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 28150 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 28089 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 28028 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 27967 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 27906 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 27845 29 100.0 32 ............................. CGCTGCAATGCATTCTCAGAGCTGATTTTATT 27784 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 27723 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 27662 29 93.1 32 ............C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 27601 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGACCCCCACCCTTTCTGGGTAAGTACTTGATAGATAACGTCTAAAGTACTCAAATCTCTCCCCCTAAGCCTTAGTGATACAAAAATTGTGTACCACCAGTAGGCTGCACTATGTCTCTTATGCTCTCCCGTCATGGGATCTGGTACTACCGGAAAGTTAATATCTTACCCTGTGGTAAACGCCATGAGTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58129-55049 **** Predicted by CRISPRDetect 2.4 *** >NZ_QISG01000005.1 Cronobacter sakazakii strain CS-42 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58128 29 100.0 32 ............................. CAATCGAGGAATTAGTGACTAAACAGGCAGCC 58067 29 100.0 32 ............................. ACATCTTCATCCTAGCCGGTAACTATCTGCAA 58006 29 100.0 32 ............................. CCAACTCAAACGCCGAGCCGATTCACGTATCT 57945 29 100.0 32 ............................. CCATTAACATCTATCAGCGCAAACATACCGGA 57884 29 100.0 32 ............................. CCTGCCGTTGCGCGCGGGTGGCGGCGCGATAC 57823 29 100.0 32 ............................. TCGGTTTTTATGCCGTAATAGCGCCACTCTAT 57762 29 100.0 32 ............................. CGCGTAGACGGTGCGGGGAGGTGTTCAGTTAC 57701 29 100.0 32 ............................. CATCTACCACCCGGCGCGGTGGTCGTGATTGT 57640 29 100.0 32 ............................. GAGTCGGTTCCGCGCTTCAACGCAAGGAAAAA 57579 29 100.0 32 ............................. AGCTTTACCGCGCTCAAGGATTTCCCGAATGG 57518 29 100.0 32 ............................. AATCTCGCGTCTGCATTGTCGCGCCAGTTATC 57457 29 100.0 32 ............................. GACTTTGCCACGATACCGAATGCGATCATGTC 57396 29 100.0 32 ............................. TATGACATACTATGAGAGCGCAGCGGGCGAGG 57335 29 100.0 32 ............................. AATCGACACCTTCTTACCGTCCACCAGCGTAT 57274 29 100.0 32 ............................. CCTGGAGTCGGGCGAAGTCGCGTTATATACCG 57213 29 96.6 32 .................T........... CTGCGTTCGTCGTCGAGCTGCAGCACGTTGTT 57152 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAGCCGA 57091 29 100.0 32 ............................. GCAGGCTCAGTGGTCAGAAGCTGAATGGTCGA 57030 29 100.0 32 ............................. CAGCCAGCGCCGGAAATAAACGTTCATATCGA 56969 29 100.0 32 ............................. AAACTGACTCTACAACACCTGGATACCTGGGT 56908 29 100.0 32 ............................. GACGCTTTGACGGAATGACGGACATGTATGAA 56847 29 100.0 32 ............................. TGCTGCAAAAAGAATTACTTGGCACCGATGAT 56786 29 96.6 32 ......................G...... ATCCGCGGGGAGGAAACACTGACGGTACATAC 56725 29 100.0 32 ............................. GCCATGAGAGAGACGGCATAGACCTGAATCAG 56664 29 100.0 32 ............................. GCTGACGTTCTGCAGCCATGCGCCTACGTGAT 56603 29 100.0 32 ............................. TCTAAAGGCGCAATCTTCTTCTAAGGAGTTCA 56542 29 100.0 32 ............................. ATCCAGCGTGAGTAATATATAGCTATGTTATT 56481 29 96.6 32 ............................T GAAACGGCGGTTACCCTGCCGGGAACGTGGCG 56420 29 100.0 32 ............................. CAGTCTCTGGCAACCTCCCAGCATTCGCTACT 56359 29 100.0 32 ............................. CGGTCCATTTTCTTACCAAAGCCGTATGTTTT 56298 29 100.0 32 ............................. CTGGTCAGCGTAAACGCCGCAAATACGACAAA 56237 29 100.0 32 ............................. GCAACTTTTAGCGCCGCATTCTCCGCCGCTAG 56176 29 100.0 32 ............................. TAGGGAATCAGCGCCAGCATTTTGCGCTTGTC 56115 29 100.0 32 ............................. AAGTGATAACAGTGCTATTGCCGTTTTTTGAA 56054 29 100.0 32 ............................. GCTAGTCAGGTCGTTGCCAGCTTCATGCCCTC 55993 29 100.0 32 ............................. AGCGAGACGGTCGCAGCGTGTAATCTACAGTC 55932 29 100.0 32 ............................. ACAACTGGCAACTGGTGGATATCGAGACCACT 55871 29 100.0 32 ............................. TGCGTGCCACGGGTAAGGAATACGCCAGCTTT 55810 29 100.0 32 ............................. GCAGATCCAGGTAACGTTGCGCTGGCGCTGGT 55749 29 100.0 32 ............................. AATGCGATCATCGATATCGGGCAGGCTGTCAT 55688 29 100.0 32 ............................. GTGTGAGACTTTTGCGCCGCCTAACTTGATCG 55627 29 100.0 32 ............................. CAGGAGATCGCCAAATCAACGCCCAGCCAGAC 55566 29 100.0 32 ............................. CCGCGGCGGTATTCCCTGCAGGCCTGGTTATT 55505 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTAACAGGA 55444 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 55383 29 100.0 32 ............................. GTTATCATCTGAATGCCTAAAATTGAGGAATT 55322 29 96.6 32 .C........................... TTTTCGAAATTGAGCATATTTAACCTATGATT 55261 29 93.1 32 ........T..A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 55200 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 55139 29 96.6 33 .C........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 55077 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAACTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTATTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //