Array 1 578-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXS010000013.1 Corynebacterium sp. Marseille-Q2823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 577 29 100.0 32 ............................. GTGGAACAACAATTTTGCGACCCTACTTTTAA 516 29 100.0 32 ............................. ACCCGGCATGTCATCGCCCGCGACGTAGCTGA 455 29 100.0 32 ............................. GAGGACGGCAACGGACCGACCCGCCTGTCCTT 394 29 100.0 32 ............................. ATATCGTCCTCTTTCTTAGGTTTCGGTGCAGG 333 29 96.6 32 ............................G GGTAGTCATCGGCGCTATCGGCAACATGATTG 272 29 100.0 32 ............................. CACGTCATCGCCTGTTTTGCGTATGCCACGAC 211 29 100.0 32 ............................. GGAATCATGACGTGCCCCTTGCCTGTGAAGCG 150 29 100.0 32 ............................. GGACTTGATAGGAGTAATCAAGCGCGCCGGGG 89 29 96.6 32 ............................G AAAATGTGGGATTCCCTGAACCGGGATAAGAA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : AACTTGAGGTCATTGCTTCGGGAATGAACTGGGCTGAAGAGGAGACACTGTCGTGATCGTTCTCGTTGTAACAGCGTGCCCCGCTGGGCTTCGGGGCGACTTATCGAAATGGCTTATCGAACTCACACCGGGAGTGTTTGTTGGCCGTCCTTCCGCAAGAATTCGTGATCTTCTGTGGGAGCGAACAGTCGAACTATGTAAGGACGGACGAGCTCTACTGGTCTACTCGGCAGCTAATGAACAAGGCCTAGAGTTTAGGACTCACCGGCACCATTGGCAGCCAACAGATTTCGATGGAGTCACGCTTATGGTTCGCCCTTCTCCTGAACGCAAGACTGTGCAGAGCAGAACTGGTTGGTCGCGAGCACGACAGAACCGTTCTGCGTATCAGAAGCAGAAAAGAAACAAGTAGTAGGGGCACACTGCACCCTAGGTTCTGTTATCGCGAAAAGTCGTATGTAAAATGAGACTACGGCTCCCTAATTCGCTGTTCAGCAAGA # Right flank : C # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13-5593 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHJXS010000001.1 Corynebacterium sp. Marseille-Q2823, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13 29 86.2 32 C.CA........................G AAAATGTGGGATTCCCTGAACCGGGATAAGAA 74 29 96.6 32 ............................T CAGCGACCCGATACCGTTAAAGACCGGCTTAA 135 29 100.0 32 ............................. TAGACCATCTAGTCACAGTGACGAAAAAGGCC 196 29 96.6 32 ............................G TCTAAGAATCTGTCCACCAAGAAGATGAAGTC 257 29 100.0 32 ............................. GGATGGGGCGCGGGAACATCTTTCCCGCCTGA 318 29 100.0 32 ............................. GTGCAAGTTGAGCTGAAGTCCATGGTGACGGG 379 29 96.6 32 ............................T AGACACCCCAGAGCAAGGTCTTCAACGGCTCG 440 29 100.0 32 ............................. CCGAACCAGGCGACACCACACCCTGGCGCGTC 501 29 100.0 32 ............................. TGACGGAGCACGAGAAATATCCACCACCTCCG 562 29 100.0 32 ............................. CCTCACCCTGGAGTGGTGAGGTGGGAGCGAAC 623 29 100.0 32 ............................. CGGTTTGTCTGTTACCGAGCTGTCGCAGTCTG 684 29 100.0 32 ............................. TACATGGCTGTCACCACGCCGCCGCGGTTCAC 745 29 100.0 32 ............................. CCAAACCGGGGTACCGGCGTGTTCCAGGTCGA 806 29 100.0 32 ............................. CTCCGGGTTGCCTTGCGGGGTGGCTTTGTCGC 867 29 100.0 32 ............................. GCCCAAAGAAAGTGCATTCCGACCATGGTTCC 928 29 96.6 32 ............................G TCCCCGTCGCGCTCATAGTCGACGTCAAGGTA 989 29 96.6 32 ............................G CAAAACTCACGAAAGCAATCCGAACCGAAGCC 1050 29 96.6 32 ............................G CTGAAACGCGGTTGGCGGAGTTGAAGCGTGCG 1111 29 100.0 32 ............................. CACGCCGGGGCGTCAGCCAGATAGACGGGCAG 1172 29 100.0 32 ............................. AGTCATCGTCGGCGTGATTGGTGTCATCGGCA 1233 29 96.6 32 ............................G AAACACCTCGTGCTCAGTAACGGCACCGGCAT 1294 29 100.0 32 ............................. TTGGTGGGGCCGTACTCTGTGCCGCCTGCTTT 1355 29 100.0 32 ............................. CTGCCACCGAAGTACCTCACCGTCCACCCCGA 1416 29 100.0 32 ............................. CCAGCAGGCTGACCCGTCAACTGGCCACCAAC 1477 29 100.0 32 ............................. AGGGCGGCGGGCTGCTCCGTCAACTCGCCACC 1538 29 100.0 32 ............................. AACCTTACGACCCCCAATCCGACCCGAATACA 1599 29 96.6 32 ............................G GATGGGACGCGACGATTGAATAAAGGAGAAAC 1660 29 96.6 32 ............................G ACCACAATCAGCGCCCTAGACGAGGAAGACTT 1721 29 100.0 32 ............................. AAATGGCTTTGAAGCTTATACGTTCTGGCCCG 1782 29 96.6 32 ............................G GGCAAGGGCTGGCCGCAGCTCGGACAGAACGA 1843 29 96.6 32 ............................G TGGATTACCGTCGCCATCTCCGATGCCGTACC 1904 29 100.0 32 ............................. CAACCCTGCATGGTCTCCAGCACGCCCTTAAA 1965 29 100.0 32 ............................. TACCAACAGCCTTGTCGTACTCCAGCACCACC 2026 29 100.0 32 ............................. CACGTGGGCCTTCTGCTCACGCACCATCGAAT 2087 29 96.6 32 ............................G GCTGTAATGCCGAAAACGCAGAAACCCCCAAC 2148 29 100.0 32 ............................. GACAAGAGTTTCACACCGCCGACTAGGACAGG 2209 29 96.6 32 ............................G AACGCATTAACGGAGGGGCTAGCGGCCCTGCG 2270 29 100.0 32 ............................. CAGCGCTCTATCAGCATCGAGCACTCTAATAG 2331 29 96.6 32 ............................G GCACCCGCGCTCTTGCCGGAATGTGAGGAGTG 2392 29 100.0 32 ............................. TCTCCAAAGTCTCCCGAACATCGTTGATGAGG 2453 29 96.6 32 ............................G TTCCGCTGCTTCATCAACCCGTCATGCCGCAC 2514 29 100.0 32 ............................. TGGATAACCCACCTGCTGTGGATGATTTGGGG 2575 29 100.0 32 ............................. TCGCCAATCGCGGGGATGGGCATGCCTGCCTC 2636 29 96.6 32 ............................G GCAGAGAGCCACAAAAGAAAAGGACACAGACC 2697 29 100.0 32 ............................. AAACAAGGAGGTTGCATGACTTTCCTTCATAC 2758 29 100.0 32 ............................. ACACCGGACGACCAGCGGCGAAGAGCTTTCTC 2819 29 100.0 32 ............................. CCGACCAGCTGGATGACCTGTACCACCATCGA 2880 29 100.0 32 ............................. GCGGGGCAGCAGGTATCGGGAGCACAGGACAG 2941 29 96.6 32 ............................G TCGTCGCATAAGAAAAGCCCCGTTGCAGCGGG 3002 29 100.0 32 ............................. AGAACCAGTGGGTGAAGACCCGCAGCATGTAC 3063 29 100.0 32 ............................. TGGAACCACTCAAGCTCTATCCGAGACCCCGG 3124 29 100.0 32 ............................. TCACCAGACGCCTCAACCGTCTACACGCCGCC 3185 29 96.6 33 ............................G ACGCAAGGACACCCTAGGCCCACTGGGGGGGAT 3247 29 100.0 32 ............................. CCTCCACTACATGCTCGACATGGACACCGACG 3308 29 96.6 32 ............................G TGATGGTCTGCCAACCACTGGGGGTGGAACTA 3369 29 96.6 32 ............................G ACACCCACATCCGGGACGGCAGTCACAAGTAT 3430 29 96.6 32 ............................G GTACCCACGGCCCGAGGCCGGCTTTGCTGATG 3491 29 100.0 32 ............................. CGGCAGAACTAGACCCCGACCCCTGTGAAATC 3552 29 100.0 32 ............................. ATGGTCGTCATGAGCATCCCCCTATGACTGTG 3613 29 100.0 32 ............................. AGTGGTTTTTCCATCACCCTCGCCTGTGCCGA 3674 29 100.0 32 ............................. CGGAGGGAGCATAGTGCAGATTGACGAAATAC 3735 29 100.0 32 ............................. CGTCCGGGGTGCTGGTCAGCTCAAACACAACA 3796 29 96.6 32 ............................G ACCTCCCCGTCTCTGACTGGCCCTAAGGGTGA 3857 29 100.0 32 ............................. TTACGCATGCGACGCCACAACGAATCATCCAC 3918 29 96.6 32 ............................G TGGGATGTTTTCTCCTCCGCGATTCAGATAGC 3979 29 100.0 32 ............................. CCAGAAAACATTCAGCCGCTTGAGGATCTTCA 4040 29 100.0 32 ............................. GCACCAGTGGTGACCACCTGTTTGATGGCACG 4101 29 100.0 32 ............................. ACCACCGGGCCCTGACGAATCTTCTTCAGCAT 4162 29 100.0 32 ............................. CAGTCAAACGACAAACCACGGCCAGTCTTCTT 4223 29 96.6 32 ............................G GACATTCGCCAGCAGCTGACAGGCGGGCGTGA 4284 29 100.0 32 ............................. CTTAATATGTTCTGGATCACGGTCTTCATCCC 4345 29 100.0 32 ............................. ACCTTGGACCGTAACGGTATGGGTGTGCCCGT 4406 29 100.0 32 ............................. CCGCGATGCGGAGTTTCCGAGGTCGCGGGTTG 4467 29 100.0 32 ............................. TGGGAATCACTCATGGGTGTTCTTAGGGCCGG 4528 29 100.0 32 ............................. TGCTCGTACAGAGCAATCTGCTTTTCGTTAGC 4589 29 100.0 32 ............................. ACCACTTGGTAGCACTGGCGGGCACGCTCCCC 4650 29 100.0 32 ............................. CCCAATTAAGCGACAGGGAAATATCGTCAAGT 4711 29 100.0 32 ............................. TTCACCTCAGGCGGCGGCTGCAACCGTCGCAG 4772 29 100.0 32 ............................. CCTCCACTACATGCTCGACATGGACACCGACG 4833 29 96.6 32 ............................G TGATGGTCTGCCAACCACTGGGGGTGGAACTA 4894 29 100.0 32 ............................. CGGGGCTTCAGCGCATCAAACCTGGTCGTGGT 4955 29 100.0 32 ............................. TGACCGTCAACGCGGTGCACGTGCTCAACATG 5016 29 100.0 32 ............................. CCCAAGGCCGCCGCTTCCCGCAGTGGAGCATG 5077 29 100.0 32 ............................. GGTATTGAGGTGAAGCTAGATAAGTTTGGCGA 5138 29 100.0 32 ............................. AGGCGGGTTAGTCCTATTCCAACCACCCCACA 5199 29 96.6 32 ............................G CCGGGGTGGGTGGAGCGCACCAGCTTGCCCTG 5260 29 96.6 32 ............................G TTAGACACCCGTGGCGGGCGGTTCTCAGGACC 5321 29 96.6 32 ............................G TCATTTTCGTGGGGGCGAATTCAGCCGGGAAT 5382 29 96.6 32 ............................G TTCGCAACAACCGTCGGGTCATTCTCATGCTC 5443 29 96.6 32 ..A.......................... CCCAGTGTGCTTGCAAGAATTCAGCCACCCGC 5504 29 93.1 32 .............A..............A CGGCGCACGATGACCGGCACGCCACCACCGCC 5565 29 69.0 0 ...........A.A..T.....CT.TTAT | ========== ====== ====== ====== ============================= ================================= ================== 92 29 98.3 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CCACATTTTCGGC # Right flank : TTTTCGAAACGCAGTTCCTTGCACTCACACCCTTCAATTTCTGGAGATTCATTTCTCACGTTGCTTTTGTAGGTTTGCTTTCAGAGCAGCAATGTAGTCATCCAGTTCGCCCCAGTACGCTAGGGTCAGTATCTGTGATTCAGGAAGTCGACCCGCTTATCCATTCCCTGTACCAGGTCTTCGACCTCATTGGTGTGGTGCTCAACGGCATTATTGGTGGCACGATTGCGCGCCGCAGGGAATTCGACATTATTGGTTTCGTCTTTCTGGCGCTCTTTTCGGCGCTGGCGGGCGGAATGATCCGTGACATGCTTATTTCCAGTGGCCCGGCAGCGGCGATTTCTGATCCGTGGTACCTGTCGCTGGCGTGTGTGGGCGCGCTCATTGCATTTTTGATGGACCTCAAAGGCAAGGCCTGGGAGATTTTTCTTGAGCATGCGGATGCTGTCATCCTGGGCGTGTGGTGCACGACTGGCTGCGTGAAGGCGCTGGCCTACGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //