Array 1 4869428-4869883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQML01000001.1 Streptacidiphilus albus JL83 BS75DRAFT_unitig_0_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4869428 29 93.1 32 ..............T.....A........ TACATCAGCCTGCCAGCCGCGACGTCGCCGGT 4869489 29 93.1 32 G................C........... CTGGGGACGGCCCGATGCTCTTCGCGGATCGT 4869550 29 96.6 32 ........................A.... ACGAGGGTGAGCTGGGCGACCAGCATCGCCAA 4869611 29 100.0 32 ............................. GTGCAGGACCTGATGGGCATCGACTGGCCCGT 4869672 29 89.7 32 .....A.T......T.............. ATCGGGCCGTCTATGTCGTCCAGCAGCCACAT 4869733 29 93.1 32 .................A.......C... AGGTACGGGATCAGCTCTACGTTCATGCCGAT 4869794 29 93.1 32 .....T........A.............. GCGATGTCGCCACTGAACATGGACCCGTAGAA 4869855 29 86.2 0 ..............T......G..A...G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.1 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCGATCCGGTTGCAGTTGGCGGAGCAGCTCGCCGGCGAGGCGGGGCTGCACGTGACGCGGGACAAGGGGGTGCTGCCGGAGCTGGACGGCTACACGCCTGAGCCGGACGTGCTGGTGGTGGACGCGGGAGTGCTCGGTCCGGGGGACGCTTTCGTCAAGCAGGAGCACGTGCACTTCGTTGCCGAGAGCGTGTCGCGTTCCACGGTCGGTCAGGACTATGGGCGCAAGCTCAACCAGTACGCGGCGCGTGGCATCGCGGTGTACCTCATCGTGGACGTGCTGACCGGGGAGTGCGTTCTGTATCGGGAGCCGAAGGGGGACGAGTACACCTCGGCGGTGCCTTACCGCTTCGGCGAGGAAGTCGGTTTCACCCTCGCCGGGGTCGCCGTGACGGTGCGTACCGACTTCAAGAAGATCCGCTGAGTTCCGCCGGTCCCTGAGCCGAGGCAGCGCGATTACGAGTTCCCATGAACTCCTTCCGAGACTGCGCCGAAGCCAG # Right flank : GCCGCAGTCCAGGAGATGCGGGCCGAGTAGACTCCGACGCTGGAGCGGGACGGCTATACCATCGCCGTCTACCTGCCACTCGGCGTCAGGGGAGACGTCCGGCAGTACCTGCACCGGGCAGTCAGCGACCTGGCCCACACGGCGGACTGGCACCAGGGCTGGGACGCGCAAGTCGTCGGGCAGGCTGGGGACCCGCTCGGGGCAGTCGACGGGAAGCGGCGATGACCCTGTACGAGCGCGTTGCTGCCACCCCGGCGGATCTCGCCGCCCTCGCCGAGGCCCGTCTCTGTCGAGAGGCCCTGCCTGGTCCAGGCCATGGCTGCTTCCGGCGTCGACCGCAAGCAGCTCGCCGCCCAACTCGGGGAACGGCCTGGCAGGGTCGCCCGGGTGCTCCACGGCGACGGAGACATCACCATGGGTGGCGTACGAGGCCGAGCTTCAGCTTGTGCCTGCCGGGGAGCTGCGACGGAAAGTGATCTCTGGCCGGACGCCGCCGATGT # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4871366-4872260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQML01000001.1 Streptacidiphilus albus JL83 BS75DRAFT_unitig_0_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 4871366 29 89.7 32 ...........TAG............... GACTCGATGCAGAAGTTCCTGGAGGTCACCAG 4871427 29 82.8 41 ...T.A.....G..T..C........... AGGGCGGCCAAGGCGGCCAGGGCGTCGTGCAAGCGTGGGCT 4871497 29 100.0 33 ............................. AAGAAGGGGTTCGGGAAAGTCGCCGAGGAGCAC 4871559 29 89.7 32 .........A..T............G... TACGCCGACCTCAATGGCGGCCAGTCTGCACC 4871620 29 86.2 32 ...T....T..G.....A........... GACGGTGTCGGCGTGGACCCGGACACGAAGCC 4871681 29 82.8 32 ...........G..T...T.......T.A TGTACTTCGAGTTCACCGGTGTTCTCCAGGAC 4871742 29 93.1 32 T..........................T. AAGGGCGACGTCAGTGTTGTGAACTACGGGGC 4871803 29 86.2 32 ............AT..TA........... AAGCTGGTGCCGCTAGACGAGGGCACTATGGA 4871864 29 93.1 33 .......T...G................. CACTTGCTTCTGTTCCTCAACACCTTTGCCCCA 4871926 29 79.3 33 ......T...TG.T......AT....... GCGATCGTCGGCCAAGGGCGACATGCGGTTCCA 4871988 29 75.9 32 .......T..TG..TC...A.....G... GCGATCATCGGCGCTGGCAACATGCGCATCGA 4872049 29 75.9 32 .....T....TG..TC..........T.T TTGTACGTCGCGAAGGGGCACAGCAGGACCAG 4872110 29 86.2 32 ...........G..T.T.......A.... ACCCCGCCGGTACGCGGAACCCGCATGAGCCC 4872171 29 89.7 32 ...T.......G............A.... TCGACGTTGCCGATGCCGTTGACCTGGAGTAC 4872232 29 82.8 0 .......T.....T.A......C..C... | ========== ====== ====== ====== ============================= ========================================= ================== 15 29 86.2 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGACGCTGCCGCATTGTCTGCTCGTACTCGTGATCTTCGTCGTTCTGGGACGCGGCGAGGGCTGCGTAGCCGCTGACCATGACCTGCTGCTGGACGGCGGCTCGGCCGGCTTCCATGAGGGCTTGGAGGGCCTCTGCTTCTGAAGGGTTCTCGGATAGCTCGATGCCCAGCGCGGCGAGGGCTGCGCGTTCCACGCTTTGCGGCTGCCGGACTCGCTCGACGGCTTGGGCGTCCTCTGCTGTCACGGGCACGGACTTCCGTGCCACTGTTCTACGAGTGAGGGTGCTCATGAATCAGATACTGCTGCAAATATTGCAGCTAAGCAAGCTGCAAAACTAGCCAAACACTGTTGCCCTTGACACAGCAGCGAAGCCCATACAGAGGTTTCACTCAGTTGGCCCCGCCCTCACCTGGTGATGGGGCGCTTATGCACGGGGGCGCCTGCCCCGCCCATGACTAGTTGAATGTAGTCATCGGATCATGACGAGGGCCCAGTCCCT # Right flank : CCCTTCCCGAAGACGTGTCGGCGTCGGGTGAATCCTGACCGCTATTCGGCGGTACAAATCTGACCCACCTGATGGTCGTCCGGTCATCCTGATCTTGGTGTTCAAGGTCAGGAGGAGAGGGTGATATCCGTGGAGGACTGGGCTGAGATCCGTCGGCTCCATCGGGCCGAGGAGATGCCGATCCGGGCGATCGCGCGTCATCTGGGCATCTCGAAGAACACGGTCAAGCGGGCGATCGCGACCGATCGGGCACCGGTCTACGAGCGGGCGGCGAAGGGCTCGGCGGTGGACGCCTTCGAGCCTGCGATCCGCGAGCTCCTGAAGGCGACGCCGTCGATGCCGGCCACGGTGATCGCCGAGCGCATCGGCTGGGAGCGCGGGATAACGGTCCTCAAGGAGCGGGTCCGTGAGCTGCGCCCCGCCTACCTGCCCGCGGATCCCACCGGGCGGACCCAGTACCTGCCTGGCGAGCTGGCGCAGTGCGACCTGTGGTTCCCGCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 9464257-9463801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQML01000001.1 Streptacidiphilus albus JL83 BS75DRAFT_unitig_0_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9464256 29 100.0 32 ............................. CCCCAGCCGCCGTCCGTGCTGGTGGCGGGGCT 9464195 29 100.0 32 ............................. CAGATCGGGCCGTCGCCGTGCAGGGAGTGGGT 9464134 29 100.0 32 ............................. GTAAAGGCGCTGCGCGGCCCCGACGGCTGTAC 9464073 29 96.6 32 ............................T CATGGCGAATTGCCGGACCCCCTGGCCCGGAC 9464012 29 100.0 32 ............................. CTTCCGTCGGGGTTGGCGGTGTACGAGCCGAA 9463951 29 100.0 32 ............................. GCACTCAGCGCCGCGCCGATCGGGGGTTCGAT 9463890 29 100.0 32 ............................. TCAGCCAGCAGGACCGAGCGGCCGTGCGGTTC 9463829 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Left flank : CAGCCTGACATGGTGAGCGCTTCGAAGGTTCGCAGCACCTTGTGCTGGAAGGGAGGAGTGATCTTCCCAATGTCGTGCAACGCGGCCCAGTACATCAGCAGGCCCCGCAGGTACTTCAGCTCGACCCCGAGCGCATCCGCTAACGCGCACCGGCGCCGCTCGCTGACCATCCGGTCCACCAGAACCCCCATCACAGCAGCGGTGTCCAGCAGATGACAGATGATGGGATAGGGAGTGGGCAGCCCCCTCTCCTTGCCGACGAGGCCCGCGTCCACCTCAACCGTCCGACTCATCCGTACCTCCATGCCATGCTTACGACCTCCACCGCACTGGAGGCACCCATGAGTACGACACCACGCCCCACTGACAATCACGGTTGGCGAACGTTGCCTGGAGCCCCAAGGGGTCATTTTGTCCACTCCCCGCAGCCAATGGCGCTATGCTCCGTCAGCACTGGTTACGAATTGGCAAAGTGGCTAGTTAGCTGCAGGTCAGGAAGA # Right flank : TCCGTGTCAATCTCCGTTGGGTGCAGCTCTTCCTGAGTGAACGTGATGCCAGGCTGCGAGGTTGAGTCTGTCCTGGCAACAGGACTGGTGGACCAGTTGATGCTCCTGGGTGTACCAGCGCGATGCGCACGGACTTGGGCAGCTGTCGGCCGAGTACCAGCCCGACATGCCCTCCCCGACCCGGCTGCCGTGGACATCCGCGCCGGTCCGCGCGGGGGACGGTCGGCTCCGCCGTCCCGGGGCCCGTCAGGTGATCAGCACATGCGCCGCCGTCACGGGGAGGGAGACGCTTTTGCCGTGGTCGGCGTATCCCGCGATAAAAAACGCGACGATGGCAGCCAATACCAGGAACGTGGCAAGGACACTGCCGATCCTGAGCCGTGTCACCACCACTGGCTCGCCAACTGCCTCGGCGGCCGGCACCTCGTCGAGGGCCATGGCGGCCTCACGGCTCCGCTCCGGGCGTTCCCCCAGCGCACGAACATAGATGGAGATGCCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 9474640-9476803 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQML01000001.1 Streptacidiphilus albus JL83 BS75DRAFT_unitig_0_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9474640 29 100.0 32 ............................. ACGGTCGACCAGAACATCGCCGCGGTGCTGTC 9474701 29 100.0 32 ............................. CCGGTGGTGGCGCCGAGGCCGGCGCGGGTGGC 9474762 29 100.0 32 ............................. TCCCTTCGTCGGCCGGCCTTCGCGGCTTACAG 9474823 29 100.0 32 ............................. TCGGGCGGGTGAGCTGACCGGCATCGCGGACG 9474884 29 100.0 32 ............................. AACTCGATGCGTCCGGCCATGAGGCTGGACTC 9474945 29 100.0 32 ............................. GCATGGGCCGCGAGGGCACGGGCGGCAGAGTC 9475006 29 100.0 32 ............................. CTGTTGGCTGCTGCTCTGGAGGAGGCGTTGCT 9475067 29 96.6 32 ............................A GCAACCGGCCGCCCCGGGCCCCTGACCCGCAT 9475128 29 96.6 32 ............................T TCGACGCGGGCCAGCGCGCGGGTTGCGCCCGG 9475189 29 100.0 32 ............................. GGCGAGCACGCGATCGCCCACCGGCTGGGCGG 9475250 29 100.0 32 ............................. GGGCTCGGGTGGCACATCGACACCCGGGCCGC 9475311 29 100.0 32 ............................. GCCTCGTTGCTGGCGTAGGAGTGGCAGCCGGC 9475372 29 100.0 32 ............................. GGTCGGGTGGCGGTGCGGATCAGGCCGCGCGG 9475433 29 100.0 32 ............................. ATCATGTCCGTGGGCGAGCCGATCGTGTTCGC 9475494 29 100.0 32 ............................. GTCTGGCAGTTGACGCCGATGTGCTCGCCGCG 9475555 29 100.0 32 ............................. GACGGCATCGCCGTCCTGTCCGACACGCGCCA 9475616 29 100.0 32 ............................. GCGTACTTCAGGTCCTGCTCGGGCTTCAGTCC 9475677 29 100.0 32 ............................. ATGATTTGTCCCGTTCTGTACGGGAGTTGGTG 9475738 29 100.0 32 ............................. GCGGTGGTGGACGTCTTCACCGGTGGCCGGTG 9475799 29 100.0 32 ............................. CCGTGCAGGGCCCTGCGCTCCGCATCGGCGAT 9475860 29 100.0 32 ............................. TCCGCTACGTCGTGGTCCTGACCTCCGGAGTT 9475921 29 100.0 32 ............................. CCGAGCGAGCGGTAGAGGTGCGCTCCGGCGTC 9475982 29 100.0 32 ............................. GCGTACACCGCGTCCTGGGCGGGGGACAACTT 9476043 29 100.0 32 ............................. CCGACGGCCTCGCCGTCGTCGTAGGCCACGAC 9476104 29 100.0 32 ............................. TACGGCTCCATGTCCACACTGACGCGGATCGC 9476165 29 100.0 32 ............................. GCCGAGCGCCGCCGCGCGACGTCGTACGGCAT 9476226 29 100.0 32 ............................. CGGCCCCGGAAGGGGTCGAGGCGGACGTCGAG 9476287 29 100.0 32 ............................. TGGTGGACGTGGTCGCTCGCCGACCACCTCGC 9476348 29 96.6 32 .....T....................... AGGACTGAGGACACCGAGGGCCGGTGGGGTCC 9476409 29 100.0 32 ............................. CCCTCGCCCGGAACGTCGCCGAGTTGCCCGAC 9476470 29 100.0 32 ............................. GTGCCGTCGTGCTGGTCGATGACGGTGCCCTC 9476531 29 100.0 32 ............................. TTCAATATCGCGCGGAAACGAGCCGAAACGCT 9476592 29 96.6 32 ..........................T.. GTCACGCGGTCGTGGTCCATGGCCCAGTGGTC 9476653 29 100.0 32 ............................. TGAAGGTCAAGAGGGTTGATCGGGAGGCGGGT 9476714 29 100.0 32 ............................. AACCAGCACCAGGACCGCCTGAGACAGGTGTG 9476775 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.6 32 GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Left flank : ACATCCAAAATCTCCTCGACCCCGACGGTGGCGCCGGGCGAAGCGGGGCCGCTGCAGGGACAGAGGCGATGGACGTGGAAGAAGTCGAACTGGTGAGCCTGTGGGACCCGGAGACCGGTCCCGTCAAGGGCGGCACCAACTACGGCGCGGAGGGCTGACGGCCCATGGCCAACCTCACCGTCATCTCCACCACTGCCGTCCCCGATCACGTCCGCGGCGCGCTCAGCCGGTGGATGCTGGAGCCCACTCCCGGTCTGTATGTGGGAACTCTCTCGGGCAAGGTCCGCGACGAACTGTGGGCAGTCGTTGCTGCCTCCGTCGGCACCGGGGCCGCTGTCGTCATCAGCCCGTCCGACAACGAACAGCGCTTCATCATCCGCACCGCCGGCGAACGTCGACGCACCGTGGAGGATTTCGACGGCCTGATGATGATTGTCCTTAACCCCTTGGAGGCGGATAACGAATCGGCAAAGGCTGTGTAGATCCCCAGGTCGGCAAGT # Right flank : GCCTGGCGGGGGCACTAGAGCGTGTTTAGAAAGTGCGTTCACAGCCACTCGTCGATCAGGGCGACGTTGACTGTCGCCTCGTAGCGGACGGCCAACTTGTCGTACCGAGTCGCGACCGCGCGTCGGCGCTTGAGTCGGCCGATCCCGCACTCCACCGCGTGGCGCTCGCGGTAGTCGACCTTGTCGAACGTCGGCGGTCGACCACCGGCAGAGCCCCGCTTCCTACGGTTGCGGATCTGGTCCCGCTTCTCCGGAATGGTGCAGCGTATGCCGCGCCTGCGCAGGTAGGCGCGGTTCGCCCTGGACCCGTAGGCCTTGTCCGCGCGGATCCTCCTGGGCCGGGTGCGTGGTCGACCAACTCCGGTGCGGGGCACCCTGATCAGCCCCAGGACCGTCTGAAACTGCGGGGAGTCGCCCCATTGGCCAGGAGTGATCACGATCGCCAGGGGCTTCTGCCCCTGCTCGACCGCGAGGTGGATTTTCGTCGTCAGGCCTCCGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 9477777-9478039 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQML01000001.1 Streptacidiphilus albus JL83 BS75DRAFT_unitig_0_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9477777 29 100.0 32 ............................. CCGCTGGACAGCGAGGATCTCGGTTTGGACGA 9477838 29 93.1 23 .............G.......T....... CTGCGCGGAGCGAGCGAGCCGGG 9477890 29 96.6 32 ..............A.............. GTGCCGTCGGCGACGGTGAAGTCGCCGCGGGC 9477951 29 100.0 32 ............................. AACCGGGGGAACACGTAGACACCGGCCGGGCG 9478012 28 96.6 0 ...................-......... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 30 GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Left flank : TGGATTTTCGTCGTCAGGCCTCCGCGGGAGCGACCGAGGCCATGGTGGGCCGGCTCGGTCTCGACGCCGCCGGGAGACTCCTTCTGGAGGTCCCCCTTTTACGGGCCCCGGCCGCGTGCTGATGCGCACGGCAGACCGTCGAGTCCACGGAGACGTCCCAGGTGACCAGGCCCTTCGCATCCGCCCGGGCCCGGAGCCCGACCACCACAGCGGCGCAGGTCCCGTCACGCTGCCAGCGCCGGAACAGCCCGTACACCGACTCCCACGGCCCGTACCGCTCCGGAACGTCCCGCCACGGCGCTCCCGTGCGAGTCCGCCACCGGATCCCGTCGATCAGCTGCCGACGGGAGTACATCGCGGGTCGCCCCGGCCTCACGCCCACGGGCAGCAACGGTGCCAGCACGGCCCACTGTTCGTTCGTCAGATCTCCACGTCCCACGACAAGATCATCGCAGACCTTGATCTACTTTATAAACAGACCCTAGTGTTTCCTCAATCGA # Right flank : GCAGGCCTGGTCGGAGCAGGGCTGGGACAAGGTGATCGCCCTGCTGCGGGCGCGGGACGACGAGTCGGTCGTCATGTCCTACTCGGCGTGCGAGGGCTTCCCGAACCCGGTCGTCGCCGGCGCGGCCCCGCCGGTCGAGGTGGATCCGGACAGCGGGCACGAGGACGCACGCGACGCGTTCTGTGCGCTGCCGCCGGCAGAGCAGTGGTCGAAGTGCATGGCCGAGCTGCAGACCGGCGTAAACGGACTGGAGTTGAAGCCGGACAACTGGGAGGAGTTCCGGTTCATGCACTGCCTGTCGGTGCAGGACCTGTCCGCTGACGACAGAAAGGGGCGGATGCGCGAGGCGGTCGAGCGGATGAACGCTTCCGCGTAGTCACCTCCCCGAGCGCTGGCACTCCATCGGAGCGACCATGGAACCATGGCGAATCCACAGCGCGGATCAACCCCCGTTGTTGGGAATGCACCTACTGCGGGGCGGCCCTGGAGCAGACGTGGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.16, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //