Array 1 77465-78226 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVV01000020.1 Clostridium sporogenes strain PA 3679 isolate UW contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 77465 30 100.0 40 .............................. TGATTTAGATAACCGCTTTTATTTATCCATTCTAGTGAAG 77535 30 100.0 34 .............................. CAAAGTAGACTACCAAAGGTTTGGCTTTCAATAA 77599 30 100.0 36 .............................. TCAAAGACAACCATGTCTGTTGATTCATAATAACAA 77665 30 100.0 37 .............................. TTTGCTTTAGACTGTAGCCTTCTTCTTCTAAGGTATC 77732 30 100.0 37 .............................. TTGTATAACTTTTCTCTTTCTTGTCTTTCTTTTTCCA 77799 30 100.0 37 .............................. GATTGTTGCTCCAGTTGTTTTTGTATTTGCAACCACT 77866 30 100.0 36 .............................. CTAAATTTTATACCCTTAAACACTGTTTCTAATTTA 77932 30 100.0 36 .............................. TTCCTATATAATCATTAGAATTTAATTTTTCTAATA 77998 30 100.0 35 .............................. TGTACATACATTTCATGTGCTTTAGAGTATGGAAC 78063 30 100.0 37 .............................. AATATATTAAAAATAGATGTGCATACAGTTACAGATT 78130 30 100.0 36 .............................. TTGCACGTCCCATAAGGGTACTGATATCAAACTGTT 78196 29 80.0 0 ........A........T..A.-.AA.... | AC [78201] ========== ====== ====== ====== ============================== ======================================== ================== 12 30 98.3 37 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : CATAGGCTGATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTATAGCGTCTTCCTAAAGTAGGCCCCGTTGAGGTTACACCATTTCTAAATTCAACTGAAAGTTTATCAGTATTAAATTTGTTCATTTAATCCCTCCCCATACAATACGTTTTATACAATATTATATGATAGGATTTATGAATTTAGTATATTTATATATAAATCAATTTTAATTATAATATTTAACTTAAATCTTGTACCAGATCTTGTACTACCAATAATATATCAGCTAATAGTACAAATAAAATATTTTCATATTAATTGAATTTTTCCAGGCACAATAAATTTATAAACCTATTCTAGTCATTGATATATAAGGATTGGAATAGGTTCTTATTTTGTATTTATAAAAAAACAAAATCACTTGGAAAACTTTCTACGAAACCTTGTAAAATCAATGGGTTTATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TTAATATGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCAAAGTTTTAGAATAGAATATAATTAGTTAATTAAGTTTCTATTAACAAAAACAATAATACTTTTAAAATATAAATAGAATAATTGATTATATTGATTAAAGGGTATATGTTATAATATAGATAAATTTGTATAAAGAGGTATATAAATGGAATTTTGGGAACTGATTGTAACAGTAGATGATAGATCTTGGCTGCAAAATAATGGGGATTTAGATTTATCTACGGGTAGATTAGAAGATAATTTGGAAAGGAAATATAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAGAGAGCATAGAGTTTAAGAATAGAAAACCAATGCATTACAACTATAAAGGTATAAAATTATTAGCAAATAAGGTAAGTATACAAGTGAAGGATAATGAAGAAGAACAGAAGGTGGCTTTCTTAGCAAGAGCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 82436-82726 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVV01000020.1 Clostridium sporogenes strain PA 3679 isolate UW contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 82436 30 100.0 34 .............................. ATATAAATGAATTTGATTCTAGTCCTGCGTTTAT 82500 30 100.0 36 .............................. TATTATTTCTTTTGATTGTTAGTTTATTCATTTTAT 82566 30 100.0 35 .............................. AGGGTTAATGAAAGTCAATCTAACGAATCATCTGT 82631 30 100.0 36 .............................. GTTATTGCTAAGGTTGGATTAGTTATTTGACTAGGA 82697 30 83.3 0 A.......G..............C....TC | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.7 36 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : TAAAGGTTTTGTTTTAAATACAAATGGACAAGAATCAATCATTAATGCTGATAGTGCCGTTGTGGCTATTGGATATTCATCTGAAAAAGACTTATATAATGAGGTTAGATTTGATATTCCAAATGTAAGACTAATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATATACCTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTTGTTCTTTACTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTGTGTATATTTAAAATTTTCCAAGTGAATTTAAAATTAAAATCTATTCTAGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTATGTGTTTTTGAAAAATCAAAATCACATGGAAAAATTTATATAAAACCTTGTAAAATCAATGTTTATATGATATTCTTAGAAATAAGGAATGGGTATTTTACTATG # Right flank : CAAGAAATGCAATTATTTGATTTGGAATAATCATTTATATATGGGAATAATTTTTTGTTTAGTACTTCTTTGGATTAAGGTATGGGATTTTTATTGACTAAAATATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAGCCCCCATTAAAAGAAGTTAAATATTTTTCTTTTAATGGGGGCTATATAAATTGCTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCGTTTGTTATAAGAGACAATAATATCACCGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTGTTATAATTTTCTTCCCCTAAATTTTCATTTGTTTTATAGTTAACGGTTATTTCATATGGCT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 9406-7674 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVV01000022.1 Clostridium sporogenes strain PA 3679 isolate UW contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9405 30 100.0 34 .............................. ACTTATAATTACTTTTGATTTTAAATCTCTATAA 9341 30 100.0 36 .............................. AAGAGTATTTCGAAGAAGTCAAATCCTTTATTTGAT 9275 30 100.0 36 .............................. CAAGATTTGCAGTATCCTATATTTTCTGCTATATAA 9209 30 100.0 36 .............................. GGAGATGTTAAATTCAATGTCTTATCACTAACATGA 9143 30 100.0 36 .............................. GCATTATTTTAATTCTCCTTATTAAATTATTTTGAA 9077 30 100.0 35 .............................. GCTAACATGGTTATAAAGCTTCAAAGTAAATTAAA 9012 30 100.0 36 .............................. TTTCTGTTATATCTTTTTCGTTTTGGCAGGCCTTAT 8946 30 100.0 36 .............................. AATATAACTTTCACATTAGGAAATAAGTTTTTATCT 8880 30 100.0 35 .............................. GTTATTTCATTTAAATTTAACCAGTATTCTATTTG 8815 30 100.0 35 .............................. TAGTTAAAATGTGAATATCTCATATCGCCTACTAT 8750 30 100.0 37 .............................. ACTTTTTCAGTACTTATTTTGTATCACTCCAAACTAA 8683 30 100.0 36 .............................. TTATTGTATTCAAGACGCTTTCGTCGAAAAAACCTT 8617 30 100.0 35 .............................. GGAATCATTTCTATTTGTTTGGGCTTGGCTGGTGT 8552 30 100.0 36 .............................. ATGCATCATCCCCGTGATCATTTTCTTTAACTGGTT 8486 30 100.0 34 .............................. TTATTAGCTTTTTCTGGACTAGGAGGTTCATTAA 8422 30 100.0 34 .............................. GGTATTACAACTTCGTGTGGAATTTCCCACTTTA 8358 30 100.0 34 .............................. TCACTTTCTTGTTTGTATGTCCATTTAACAGTGC 8294 30 100.0 35 .............................. CTTCTTAGCTTGTTTACCTTTGTTTTTCTTAGCTT 8229 30 100.0 36 .............................. TGTTTACGCTTTTGAGGTATTTCTTTTTTAGATCCT 8163 30 100.0 34 .............................. CCAGTTACACAAGCATGGTCCTTATCTTTGACTG 8099 30 100.0 35 .............................. GAAGTATTATCATATGTTGAATTAGCACTTGGTAA 8034 30 100.0 36 .............................. GGTATTCTTCTAACTTCATCTCCTGTAAACAATCTT 7968 30 100.0 36 .............................. ACTACTTTTTGAGAAAGTTTTCTAGTTAAACTTTTA 7902 30 100.0 37 .............................. AGGAGTTGAACTTGTAATTGTTCCTAGCAGATGGTGT 7835 30 100.0 37 .............................. ATTAATTTTAGTATGTTAAGTATTTTATCTGCTAAAG 7768 30 100.0 35 .............................. TGAAGTGCTCCTCTTAACTTTGTAGCCAATACTAT 7703 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.8 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : ATAGGAAGTTATCGTTTGTTTGGAATAAAGTTTACAAGTTGAACATTAACATGAGATGTATTTAAGTAGCGAACTGTGAGTCACTTACTCCTTGGAGGCAACGAGAAGGAGTTTCATTGAGTGATTAGACATTTAGTATTTTAAGTTTAGGCATGATATGAACCCAATAAAATAATAATTTAAGAAATGAAAAGTATGATTTATAAATTTATTAGCTTAAAGCAGCTATTCTTAATGGAATGGATGCTTTTTTTAATTGAGCTTTGTATAAATACAAATAAATCTAATTTTAGTGATTAATCAGTCTGATTATAAGTAAAATGTTTTTCCAACCACATTTAATTTTAAAATATACCTTAACCCTTGAAATATAAGGCTTAAGGTATGCTTTATTAAAATTTTATAAAAAATGACAAACGGTTGGGAAATTTTCTTTAAAACCTTGTAAAATCAATAGTTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAGCCCAAATCTACGATTTGGTGTGAATCGCTTACTACTTAGAGAGTGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAACTTCTATATAAATTATTAGATAAAGGGAGATTTTATGAAAAATAAAGTTACTAATAATTTAAATTTTGTTGCAGCAATATTGCTTGGAATTGTGGCTATGTTAAATTTTTTTCAGCATAAAACATTGCTGGGAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAATCATAAATAAATTTAATTTTAAAAACCTGTCTATTTTTAGGACAGGTTTTTAGTATTTAAAGGGGATAGATAAAATAATTTTTGGTAGCTATGTAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAAGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAAATTTCGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 23453-22149 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVV01000022.1 Clostridium sporogenes strain PA 3679 isolate UW contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================== ================== 23452 30 100.0 35 .............................. GTTTCATAAGCCATGTTTTTACTTGGATTTCTTGC 23387 30 100.0 34 .............................. TTACATAATCTAACAGCACCATTATTCACTTTTA 23323 30 100.0 35 .............................. AGTTTAGCTGGTTTCTATGCTAAAAAAGCAGAAGT 23258 30 100.0 37 .............................. TATATAGGATAAAGGTTATATGTAGATTCAGATACTT 23191 30 100.0 36 .............................. TTTCAACTCCTTTTTCGCCTTTAAAAAAGTCTTTTG 23125 30 100.0 37 .............................. TCTGTAAAAGTATTTAATTCCTTATCCCACATACCAA 23058 30 100.0 34 .............................. TTAAATAACTTATATTTAACGGAACGTAAAAACT 22994 30 100.0 36 .............................. AGAAAAAACAGAGAAGTTAATAAGCCAATTTAAAAA 22928 30 100.0 36 .............................. AATATATCTGCATTTTCTTTGGTCTTACACACATTA 22862 30 100.0 36 .............................. ACTTTATAAACAAGCTGGAAATAGTATTGTAAGTAA 22796 30 100.0 37 .............................. ACAACAGTATTTCCCATAGCTTTTAATTTACTTATTA 22729 30 100.0 36 .............................. GCTAATATTAATATAAATCCTTCATAAGCTTTTTTC 22663 30 100.0 36 .............................. GTTGCTCCATCATTTATAATTACAGCATCATTTATA 22597 30 100.0 35 .............................. CTATTCCACTTTTTTAATTCTGTTATATTACATTC 22532 30 100.0 36 .............................. TCTTTTTACCCTCCAATATTTGTATTGTGATACTAA 22466 30 100.0 37 .............................. TATATACCTCTCACACATACCTGTATATGAGGTACAT 22399 30 100.0 36 .............................. AGATTTAGCCCTAATATGACTAGAACACCAGAAGGT 22333 30 96.7 37 ................G............. ATAGAATAGTACACCAATATTTCGATGATTGGGATAA 22266 30 93.3 58 ......C............G.......... TGTATTAAAAAAGATAAAATATTTAGCAAAAACATGGTGGTATACTTGAAGTGCTAGA 22178 30 73.3 0 ...T.TG.A..TA..C............G. | ========== ====== ====== ====== ============================== ========================================================== ================== 20 30 98.2 37 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : GCTTTGGACAGGTTTGTTTTAGATATTTATTAAAAAACGTAATCACTTAGAAAAATTTTTTTCAAACCTTGTAAAATCAATGGGTGTATGATATTCTCAAAAATAAGAAATGGCTATTTTGCTATGGTTGAACAGTAACATAGGATGTATTTAAATTAACTGAAGCTTCTGTATAGTTTCTTTTCACTACGTTAAACAATAACATGAGATGTATTTAAGCAGGGAACCCAAATCTCTAATTTGTCGTGAGTCGCTTACTCCTTCGAAAATGATATAAGGAGTTTCATTAATGAGCATAATGTATATCTTATATTTAATTAAATTTTTCCAAGTGAATTTAAAATTCAAACCTATTCTAGCCATTGGTATATAAGGCTTAGAATAGGTTTTGGTTATGTGTTTATTAAAAAACGTAATTACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATGGATATATGCTATTCTTAGAACTAAGGAATGGCTATTTTACTATG # Right flank : GAATTATTGATTATAATAAAAAATAAAAATAGGAGTATTTAAATTTTTACATTTGTAGTGTTGCAAAGTACATTGTTTTTATAACATGCATTGAGATTTCTAATATATAATAATTAGGATTTTTAAACGTTAAGATTTATTTAACTAATAAAACCTGTATATTGTTTATTGTAAGTAAAACCGTAACATCAATATGTATTTAAATTTGCAATTATAAAATAAATATATACAGGTTTTCAAAAAAATACAAAAAGGTATTGTAGTATAATCTGATTACTATTATAATTTTATTAAAGAAATAAATAACGTCATTGTAATTATAAAATAATTATAATAAATAATAAGATATTAACTAACAAAAGAAAATAAAAAAGAGGTGATAATAGGAGGGTGAAAAACTATGCTAAGAAATCCAAAACAAGAATTACAACAAGTAGTTAAGTTTGCTAAGAAAGGAGATAAAAAGGCTAAAGAAAATATATTTATGAGATTTAAACCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 4396-9142 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVV01000006.1 Clostridium sporogenes strain PA 3679 isolate UW contig_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 4396 29 100.0 35 ............................. AAAAATAAAGATATGTCTTTTGAGAAGCTCACAAG 4460 29 100.0 37 ............................. GAATAACCTCTTCGTTATACCCCTCAATCCTTGCTTC 4526 29 100.0 38 ............................. TCTTTTTACAATGATGATGGAGAATTAATTAAACTACA 4593 29 100.0 36 ............................. TTAAACTAATAACAATAGTATTTATTACAGACTTGT 4658 29 100.0 37 ............................. TTTGATGAAAATATTTTGATTGATTTATTTTCGTTCA 4724 29 100.0 38 ............................. ATTGTATGGTGTCAGGAAAATGGTATAGAAATAGAAGG 4791 29 100.0 37 ............................. AGCGTTTGTTTATGTTGGCCCTACCAGGAGTGGTAAA 4857 29 100.0 37 ............................. AAGTCTAGGATATAGGGTAAATAAAGCAAATAATTAT 4923 29 100.0 36 ............................. AAATTTTGGGATGAGAAAAGAAAAAGGTATGTGCTG 4988 29 100.0 37 ............................. TCAGACAGCTTATTATTAATGATTTGAAAATCTTTAT 5054 29 100.0 38 ............................. TGCGTTATAGTTCAATTTTACGTTAATTAACGTAATAA 5121 29 100.0 37 ............................. ATTCTTTCTTGTTATTGGTTTATATTGAGCATCTCCT 5187 29 100.0 36 ............................. TTATTAGACTGTGCTAATTTTATGACTGTATCTGTA 5252 29 100.0 36 ............................. TATTGTGTAGTTCCTTGATATGGTATATCACAATAA 5317 29 100.0 37 ............................. TTACACCATTTTGGTCTATATAAAATAGTTAAATCTC 5383 29 100.0 37 ............................. TTAGAAAAATATATGTATTTAAGAAAGATAAGTGAAA 5449 29 100.0 38 ............................. ACATGGATCTAGATAAAAAAGCAAGTAGTGCAATGATG 5516 29 100.0 36 ............................. TTGAAAACCCTTCTTTTTCATATTTATCAAAGCACT 5581 29 100.0 38 ............................. TTGGGATTTTGGACACATCAAGATGTATTACGATATAT 5648 29 100.0 36 ............................. GACGAATATTCTAGTGTTTCTATTTTTATTCCTTGC 5713 29 100.0 37 ............................. TCTTCAAAAGTAATATTCACTTTCCTATCATCTTCAG 5779 29 100.0 35 ............................. GTGGCAGGGAGTGGGGCAACACTAAGAGCTTGCAT 5843 29 100.0 36 ............................. AGTGCTTTTCGTGTTTTTAAATTTATTCCATTTGCT 5908 29 100.0 36 ............................. TATAATCAGCATATCTCATTATTATTTTTGCATTTT 5973 29 100.0 37 ............................. TAAAATATTTTAGAATTATCTCCCTTTTGTATTCCAG 6039 29 100.0 38 ............................. ATGATAAATTAATTTATACAGATGATGAACTTATGACA 6106 29 100.0 36 ............................. TATGTCTACTTGCATATAAAACCCTGTAGCAATTTC 6171 29 100.0 37 ............................. TAAAATTGATTATAGTAATGAAAAAGAAGTAGAAACA 6237 29 100.0 36 ............................. TAGGCATATTGGAAAACAAAGATAAAGTAGAAAGCG 6302 29 100.0 37 ............................. CTCAATTCTGCTTGTAATCCTTGCAACATTTCCTTAC 6368 29 100.0 37 ............................. TTATTGCTAGAGGCATATACATTAAATGTATTATTTC 6434 29 100.0 35 ............................. ACTCTATGTTTAAACATACCAGACCACTTATAAAA 6498 29 100.0 38 ............................. CAATTCTCATATAATAGTGGTTAATCATATTAGCGAAG 6565 29 100.0 36 ............................. AATATATTATCTGTTTTAATTCCTAGCTGTCCTGCT 6630 29 100.0 37 ............................. TGGGTATTGGGAATTGGTGCTGCAACAGTTGCTGGAG 6696 29 100.0 37 ............................. TTTTAACATTATATAGCCCTCCATTTATTTGTTTTAT 6762 29 100.0 37 ............................. CAAAACAATCAAAATTAACATAAAATTTAAACATTTT 6828 29 100.0 37 ............................. GTAGAAGCAGATAAAAACTTAAAGGAAATAGAAAATC 6894 29 100.0 38 ............................. AAGAAGAGGAGGTAATAAAATGATAAATAAGTCAAAGA 6961 29 100.0 36 ............................. ATGTATAGAGATTTAGGGAATAATAAAAGTGTTCAA 7026 29 100.0 39 ............................. ATATATGGGAAAGGTTCGGAAAAGAAATAGACGAATATA 7094 29 100.0 37 ............................. TAGCTTTGTTATAACATATTACTTCCATTTTACTATC 7160 29 100.0 37 ............................. TTAGCAGTTGCCATTTGAGGATCATCTACTAACTTAA 7226 29 100.0 37 ............................. TAGTATTTACTAATTGCTCTTTTGAACCAACATTTGG 7292 29 100.0 38 ............................. ATACGTAAACCAAAATTATTTTGATTTAATTCCATTTC 7359 29 100.0 37 ............................. AATGCAGATGCTATTAACACGTCTATAAGAGACCAAA 7425 29 100.0 37 ............................. TAATATTATTTCGTGGAAATATAATTCATGAAATATA 7491 29 100.0 37 ............................. TTAGTGAAAACAATAGCATATGTATCAGCCACTTTTG 7557 29 100.0 35 ............................. TAATATTATTTCGTGGAAATATAATTCACGTAAAG 7621 29 100.0 37 ............................. ACGGCAGTACCTAATATCTCTGAATAAGCTTTATCTA 7687 29 100.0 35 ............................. CTGGTTACAATAAATTCATTTAACAAAACGGCATC 7751 29 100.0 37 ............................. GCAAATGGAGAAACAGTTATATGCTTAAGTTGGTATT 7817 29 100.0 37 ............................. GAAACTACTTTAATATATGCAGATTTAAATCAAGAGA 7883 29 100.0 38 ............................. TAGAGAAGATAGCCAAGATTATCAATGGATTAGTACAG 7950 29 100.0 36 ............................. GGATTATATAATTTTGCTATAAATAAATTAGGATAT 8015 29 100.0 36 ............................. ACAACTAGATGTTGGAGATAATTTATTCCGTTACAA 8080 29 100.0 36 ............................. ACATAGTTATAGCAACAGTTACAATAGTATCTTACG 8145 29 100.0 37 ............................. AGTACTTATTTATTGAGAACGTTAAAAACTTACTTAG 8211 29 100.0 37 ............................. GTATTTACTTAATAGAATATATGGTAATCCCACTAAT 8277 29 100.0 37 ............................. GCGACAGGCTTACAAGTAGTTGCTGTAGATGGTGATA 8343 29 100.0 37 ............................. ACATATATAGACATAGAAGTAACAATAAACATAAAAC 8409 29 100.0 38 ............................. GTAGCTTTATATATAAAATATGATGAAGTCAAAAGTAA 8476 29 100.0 38 ............................. TTTTCTAAAAAGCAAAGGAAAGTATTGAATTGGTGGAC 8543 29 100.0 37 ............................. GAAGAAGATTTATTATTAGCTAGAGCATTAGCTGATA 8609 29 100.0 36 ............................. AAATCAATTTGATGCTTTAGTATCTATGGCTTATAA 8674 29 100.0 37 ............................. AAAAATTCAATTAACAGATGAAGAAATAAATAGATTT 8740 29 100.0 38 ............................. GATCTAAACAATAATGTAACCTATGAACTTAAAATAGC 8807 29 100.0 82 ............................. AAAGGAACACCAATATATGCAGTAGCAGATGGTACTCTTTTATATTAACCTAGAGATTTTAATATAACAATTAGAACAAATA 8918 29 86.2 37 A...........T......G...A..... AGCAGTAAAGAACTTATATTAGAAGAACTTATAGATG 8984 29 96.6 37 A............................ AACTTCATGGAAGAGGTAGGAGGTTATGTATGGGATG 9050 28 93.1 36 ...................-G........ TAGCTTTTTTATTTCTAACTCCGTCTTCCTGTTCTG 9114 29 75.9 0 A...............AG.TGG..C.... | ========== ====== ====== ====== ============================= ================================================================================== ================== 72 29 99.3 37 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAGGCTTGGTGGTGATAATTTATGTTTGTTATATTAACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTAGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGTCTTTCTGATGTTAATAAATTAATTGACAAGAAGCTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAGGATGTAGTTAGAATAGAAAAGAGTTTTGATGAATTATTTTTATAATTAGTTTTGCATTAAACCTAATTTTAAATTAATTAAGGTTAAACTATTGAAATTACTAGCTTTCTTGACAATAAAAAATAAATACTAAAAACGCTACTGAAGGTTTACTGCAAAATGTGGAAAATATGATAGATTAAGCATTGCTATAAATACAGTAATGGCGGTGGTTACAGGCTTTTTGAATTTTAGG # Right flank : TGTAGATCCTATAGCATCAATTGGATTTAAGTCAATATAGTAGACACAAAAACACGAATTTTTATGCAGTTTTCTTTAAAGAATCTTCAAGTTGTTGTGGAGTCATGTAACCAATACTGCTGTGAAGTCTTTTTCTGTTATATCAAGATTCTATATACTCAAATATTGCAAATCCGGCGACATCAAAATCATAATATATAGCTAAATTTACTTCTTCCTTCTTTAGCGAAGTGTGAAAGGGTTTAATGTAGGCAGTATCATAAGTGATTTTAATAATGTTAGAACTAGACATTATACTGTGAAAGGGTTTAATGTAGGCAGTATCATAAGGACAATCCTTACCGCTGAAAAAAGTGAATTATATTAATTCCTTTAAATATGTTTAACTGTTATCAAGCTTAATTTAAGAGTTTTGGAAAGATTTATGCTAGACTGCTGTAAAATTAATAAAGGCAGAAAGAAATCTGCCTTGATTTTATCCGTTTCTATAAGTTTGTATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //