Array 1 900-138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHRA010000025.1 Streptococcus agalactiae strain MRY08-1422 scaffold_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 899 36 100.0 30 .................................... AACAAAAGCTAATTGAAGCATCTAATCGCA 833 36 100.0 30 .................................... TTCTAAGTACAGTTGACATATGATTCCACT 767 36 100.0 30 .................................... TTACAATTATATCTAATTGTGGTATAGTCT 701 36 100.0 30 .................................... ATAAAAGCATTGCAAAAGTTAATGCAATTG 635 36 100.0 30 .................................... TTTAGTTGTACAAGCAGTTGCAAATGTTTT 569 36 100.0 30 .................................... TAATAGCGATATTGAAGTGCTTATTAACTC 503 36 100.0 30 .................................... GATATGATTTTACAAGTGTAGTCGGAACTA 437 36 100.0 30 .................................... TTGATTTAATGCATAAAAATATCCCGAACA 371 36 100.0 30 .................................... GTGGCAACACGAGCCCTGTCTCTACGGATG 305 36 100.0 30 .................................... ACAGTCATGTTGCTATCTTTGATAGTGATG 239 36 100.0 30 .................................... TAATCATTTTATGAGAGATACCGCCTCAAG 173 36 77.8 0 ..............T............GGA..TGTA | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.1 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAATAACGTCAAAAGCCTTTGTATTAAAGGCTTTTTGTTTTATTCCGATTTTAAAAGGGGCACAAAAGGGGCAGTTTGTTTATTTATAATTTCTTTCATATTTACAGTTGTGTGACTGTAAATAGATAATGTTGTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 188-751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHRA010000004.1 Streptococcus agalactiae strain MRY08-1422 scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 188 36 100.0 30 .................................... TAATCATTTTATGAGAGATACCGCCTCAAG 254 36 100.0 30 .................................... TTTAAAGAGATATCTGTTTCATCTTGCGGA 320 36 100.0 30 .................................... TTTAAAGAGATATCTGTTTCATCTTGCGGA 386 36 100.0 30 .................................... AATCACTTCTGCATAAATATCTTTTACTTC 452 36 100.0 30 .................................... AAACATCCGCAACGGGATAAATAAAGCTAG 518 36 100.0 30 .................................... AGTTTCTTGTGGGTTAGCTTGTCCACCGTA 584 36 97.2 30 ..............C..................... GAACATGAAAGATTTTAAAAAAGAACATTT 650 36 97.2 30 ..............C..................... AGAGGGGAAAATATCAATGCCGAATGCTGA 716 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.1 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAGAGAATTGAGGTGAAAGGGTGCAAAAAAGGGGCAAAATAGATTAAAAATGAAACTACATTGAACTTTTTACTATTATAAACAACCATTAAATCAACGCTTGGACTATTATGAACTATTGTGTACAATAGTAGTAGATTCCGGCAGGTTCCAAAACTTTAAAGAGATATCTGTTTCATCTTGCGGAG # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //