Array 1 27183-29895 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEEC01000002.1 Vibrio cholerae strain BD23 BD23_S23_L001_R1_001contig_2_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 27183 28 100.0 33 ............................ TATGAAAGCTTGCGCCGTCATTTCACTGTGTCG 27244 28 100.0 33 ............................ CAAATCAAAGCGATGAAAGAGCATCTTTGACAC 27305 28 100.0 33 ............................ CAAGGCGCGGTGTGCTCTACCTTGGAACAAATC 27366 28 100.0 33 ............................ CATCAGTCGTTGACTTTCCCACTGGCGTAGCGT 27427 28 100.0 33 ............................ TTCTGTTGTGATCCATTTGGGGTGGTGTGGGGT 27488 28 100.0 34 ............................ CGGTACATGCACCATCAAGTTTAGCATTGATGGC 27550 28 100.0 33 ............................ TCAGCCGTTGCGTCATTCGCTGCGATCGCTTCT 27611 28 100.0 33 ............................ CATCAGTTGTCGTTATCTAACCTACAGTCGAAA 27672 28 100.0 33 ............................ CTCCCCATCAACTTCAAGTTCGATTTTGGTTAA 27733 28 100.0 33 ............................ TAAAAACTGATACAGCTTATCGGTCATATGTTA 27794 28 100.0 33 ............................ CCCAGATATATTGGGTCTGTGGCGTTCTTTGTT 27855 28 100.0 33 ............................ TTACACTATGGTAGTGATTGGTGTAATTGGTCT 27916 28 100.0 33 ............................ CAAGCGCACTTTAATGACCACGGTTGCGGTAAA 27977 28 100.0 33 ............................ CGATTAAGCCAAATTAACTGGCTTTGTTGGCAC 28038 28 100.0 33 ............................ CTATATCATCCCAAGTTCTGGAAAGTTAGATAG 28099 28 100.0 33 ............................ TGTTTCTTCGTTATGGTTAAAGGTGTTCTCAAG 28160 28 100.0 33 ............................ CTTCCGCTAACGCCACACCACATTGACGGCGAA 28221 28 100.0 33 ............................ TCCATGCGCCTGTTTCGTCTTGCTCTTGGATCA 28282 28 100.0 33 ............................ TAGGTGCGCTGTACCGTTGAAATCTCCTGTATT 28343 28 100.0 33 ............................ TCGTTGTAACCATGAAGGCCACGACCACGCATA 28404 28 100.0 33 ............................ GGATGCATTAAGTAAAACCGAGACCACGAATAT 28465 28 100.0 33 ............................ TCACCTTTGCTGTGTTTAAGCTTTCACTAGAAA 28526 28 100.0 33 ............................ TAATACTTGCGAAGGTGCGGAAATTGGCATTGC 28587 28 100.0 33 ............................ TAAGGGTTTATTAGCCCATACCGCTTGATAGTG 28648 28 100.0 33 ............................ CAACTAAAAGACATATTGGCTAAGCTAGATTGC 28709 28 100.0 33 ............................ TGAGGCTTGCTCGACTCTCGCCGCGCCTAGTTG 28770 28 100.0 33 ............................ CGCCCGATGTTCAATTTGTTGCTACTCATCGAC 28831 28 100.0 33 ............................ TCAAATGCTTCCTCGCGCTGGCGTGCATGTCGC 28892 28 100.0 33 ............................ CATTCTGCAAAAGAGGTCAGCTACGTTGAGGGG 28953 28 100.0 33 ............................ TCAAACGTGTACGCTCCTTGAAACCTCAACAGC 29014 28 100.0 33 ............................ CGAGCGATGAAGTTAATTGATGATTGGAAGCAG 29075 28 100.0 33 ............................ CGCTGACTCGCTTAGCTTAACCTTTCCAGTCGT 29136 28 100.0 33 ............................ TCCCACGCTAGTCCTTTGTCTCTTCCTCCTTGT 29197 28 100.0 33 ............................ TAGTGCAAAAGTTTTTGTGAGAGCGAAGAGTTG 29258 28 100.0 33 ............................ TGTAGCCCTGAGCCATCCACTTAACCACGGTGT 29319 28 100.0 33 ............................ TAGAGCTAAATTCGATATATCAAAAGAGGATTT 29380 28 100.0 33 ............................ TAAAAGTGGGGTTCGCACCTGCAGAGAGCATCC 29441 28 100.0 33 ............................ CGCAAGATGGTTCTAATTCCTTTGGCTCATTCA 29502 28 100.0 33 ............................ TTTAAGATCCTCAACTGGCGCGCTGCATTAGCG 29563 28 100.0 33 ............................ TACAGAATTGAGCTTTCTGCGTCTGAGTGGCTG 29624 28 100.0 33 ............................ TATCCAGTGCATGATTGATGATCTTGCAATCGC 29685 28 100.0 33 ............................ TTTGTGCGCCGTTTTCAGGGTTGATGATTTTCA 29746 28 100.0 33 ............................ CGTCTGGCGTTGGGTCTTTTGATGATTGTCGAG 29807 28 100.0 33 ............................ CTCACAGAGCTGATCATCGAAGCCCGTGAAGAC 29868 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 45 28 99.4 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //