Array 1 230054-231850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEVX010000002.1 Streptococcus mutans strain Smu93 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 230054 28 100.0 33 ............................ TAATCACCTTTTTTTAACGAGGTCATAAAATCA 230115 28 100.0 33 ............................ TAGACGATAGAGACGAAAAATTATCTCTTGGTA 230176 28 100.0 33 ............................ TATGCCTCAAATCATCAATTTCTTCAGTCAGTT 230237 28 100.0 33 ............................ CGCTAGACTTGAGTTTTAGCGAGTGGATAAACA 230298 28 100.0 33 ............................ CAAACAGATCAGAACTTATGAAAGCAGCATGGA 230359 28 100.0 33 ............................ TAACTCAACTAAGCAATCCTTAGAACTTGCTGA 230420 28 100.0 33 ............................ TAGAGTAGTCTTTTTTCATGTTCCCTGCATTTT 230481 28 100.0 33 ............................ TGGATCCAAAATGGATCTAAAATGGATCCACAG 230542 28 100.0 33 ............................ TGACACAGCTTTTTTAAAAAAGATTGACGAGTG 230603 28 100.0 33 ............................ TAGATAGGCTTATAGCCTGCATTGGTGATTACG 230664 28 100.0 33 ............................ TGGTCAATTTTTGCTAAAAAGTAAAAAAACTGG 230725 28 100.0 33 ............................ TATTTTAATTGGATATGACCAGAAGTAGCACGG 230786 28 100.0 33 ............................ TGCAATATAAGTAATTAAGTCTGATTAATAAAA 230847 28 100.0 33 ............................ TGAAGGAAAATAAGTAACTAGAAGGATCTGGCA 230908 28 100.0 33 ............................ TAGATTTCACGATTAAGGAGGTGTTAAAAAATG 230969 28 100.0 33 ............................ TAGAGCAAAAACTATTCAGCGCACAATCGGTGC 231030 28 100.0 33 ............................ TGACTGGGGTTGGCTGAATGTTCCAGACGGAAT 231091 28 100.0 33 ............................ TATAGCCTGTGTGGCCGAAATTATGTCCGTAAA 231152 28 100.0 33 ............................ TGATTTAGCTTATGCAAACTTTACGCTTGCGGT 231213 28 100.0 33 ............................ TGAAAACTGGGCAACCTTCCGAGACTGTAGACC 231274 28 100.0 33 ............................ TGCTTTCCAGTCTTCGAAATTCCATTCTGTGAA 231335 28 100.0 33 ............................ TAGATGTCTGTCCCAACTAACCCCGTCCCAGGC 231396 28 100.0 33 ............................ TATAAGAACGACATTGCATAATGTTCTAATAAA 231457 28 100.0 33 ............................ CAAGTCGCTTAAGTTCTGGTCTATCTGTGTTGG 231518 28 100.0 33 ............................ TACCAACAGTCACTCATCAGCAAAAGAAAGTTC 231579 28 100.0 33 ............................ TAAAGGGGAAAAAGTTGCTACTATGGTATCAGA 231640 28 100.0 33 ............................ TGGATAATTTATATTCTAAATTATTTATTTCTG 231701 28 100.0 33 ............................ GTAATCCCTATTTTTAGAGTAACTTAAGATATA 231762 28 100.0 33 ............................ CGCAAACGGAAGTCCGCACGCGCAAAATGAAAG 231823 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CCAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 328621-328855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEVX010000002.1 Streptococcus mutans strain Smu93 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 328621 36 88.9 30 A.....TT.................A.......... CATGCAATTACATATTCAACTAAGGGGCCA AC [328626] 328689 36 100.0 29 .................................... AGCATTCAAAGCATTTTTAAGTGCACTTA 328754 36 100.0 30 .................................... TACTGTTGCGGTATTAAAAAGGTACTGTTG 328820 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAGAAAGAGACCAATACTCCCTTTGAAAGAGCACTAGATAAAACTTATGGACCGGCTTTGAAAGATACACTTGAAGATCCATTTGATAAGGATTTAGATGCCCAATACAAAGCAATCAAAAAACAACCAATACCTTTTGAAAAAGCCTTAGACAATATCTTTGGAAAAGATTTAGGTATCGAAACAACCGATCCGCTGGATAATTTATTAAGATAAGAACAGTAAATGTCAGATTGATGAAATAGTTTATTTTAGACTGGTTTCATCAATTTTTTGATTTGATAAACTAAAAATTTTTAAACGTTTTTTCTTGAAATCGGACAAAGCTTAGTTACATTTTAAAAATACAGAAATATTTCTATATTTTTTCATTTATATTGTTAAAATATTTCGTAGATAGTGGTATAATAGAAACGCTTACAGTAAAGCAAATAAAAAAGCACCGAATCGGTGCGCACTTTTTCAAGTTGTGTACGGACTGGATTAAAAATCACTGCCTT # Right flank : CAATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAACCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //