Array 1 322779-322102 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEC01000002.1 Schleiferilactobacillus perolens DSM 12744 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ============================================= ================== 322778 22 100.0 44 ...................... TCTAACACGCAAGCAAGCGGAAGCGCTGGCTCATTGTCGCACCT 322712 22 95.5 42 .........T............ AAGGCACAGCATCAACCTAGAAACTACGGTAATGTCGCACCT 322648 22 100.0 45 ...................... TGGTAGGCAACCAACTTTAATGCCAGTTTGTTGGTCGTCGCATCT 322581 22 100.0 43 ...................... CAATAATGACACTCTTTGCACAGTGCTTGTAAGTGTCGCACCT 322516 22 100.0 42 ...................... CATATACAAGTGCCGTAGTGAACCAAGACCATAGTCGCACCT G [322513] 322451 22 100.0 43 ...................... CCAATTCGAAGGCCACTTTTCGAAGTCTTCCACGGTCGCACCT 322386 22 100.0 44 ...................... GACAATATCTTTATCCAAGGCCAAGGGGTCAATCCGTCGCATCC 322320 22 90.9 43 C.T................... CACGACGGATGTTTTCGCCTGATTTTCGGAGTTGGTCGCATCC 322255 22 90.9 43 C.C................... TGCGAAAACTCAACGAAAGGATTGGTTCGTGTTTATCGCATCC 322190 22 86.4 45 C.C......T............ CCTGGCGTGACGACCTTGCCACGTGCCGGCACCATGGTCGCATTC 322123 22 68.2 0 .C..AA..C......C....CA | ========== ====== ====== ====== ====================== ============================================= ================== 11 22 93.8 44 TTAGGGGTGCGTGAATTGAAAG # Left flank : | # Right flank : TGCAATGCAAAGAAAATATCTCGGTGATTTTAGGTTGTACCTATTATGGTGCGTAAATTATAAAACACTCACACTTGGCTGAAGTACAACTGCTGCCGGGATGATTTGTGCAGAGGCAAATATTAATAATCAGAACACCCAACCACCAAAGACCACTGCCAAAAACAGTGGTCTTTTTGGTACAATGGACAACGTTATACACAACAACTTACCCCAGAAGGGAACATCCACCATTGTCACCAGCAAACACTTACCGCACCCGCATCTCCATCGGTCTCTACATCAACTACATCGTCCACGGCGCCGGCGTCCTCATCCTCGCTCAGTCCATGACGATGCTGGCCGGTCAGTGGCACACAACCACCGCTGCCGTTGGTGCCGTGATTGCAGCCATGGGAATCGGTCGGTTGGTCGTGTTGTTGCTGTCTGGATATTTAAGCGACCGTTGGGGCAGACAGTTCTTTGTCGGCCTTGGTATGACCAGTTACTTGGTATTCTTC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAGGGGTGCGTGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 9143-8532 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEC01000031.1 Schleiferilactobacillus perolens DSM 12744 Scaffold31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================================================== ================== 9142 32 96.9 34 ...............................A TCTAGTCGTATTTGATCCACCGCACATGATTAGC 9076 32 100.0 33 ................................ CATCAACCACATCCTTTCCCGCCGTAAATGCTC 9011 32 96.9 34 ...............................G TCGCATTGATCACTTATATGATGTCTCGCCAGTG 8945 32 100.0 33 ................................ CGACAAATAAATAGAGAGCAGTATGCAACTGCT 8880 32 93.8 34 ..................T............A CGGAGATTCCGGGCAAATCTCGGGATCTGATCCA 8814 32 93.8 33 ...T.........................T.. CCTTGGCAATCTGCCCAACCGACGAGGTTCAGG G [8798] 8748 31 81.2 34 .....-...TA......A.A...........T TGGGACGGCCTATGTTTGAGTGAACAGTAAGTTT 8683 32 78.1 86 T.T...C.TT.A...................G AATTGTGGCATTTGTTCCAAATTATCCGTAATTGTCGCATACCCTGGAAAGGTTCATCCGTATCCAGATGAGACTGCACAGGAACT T [8666] 8564 32 78.1 0 ......C.AA.A...A..........A...T. | C [8535] ========== ====== ====== ====== ================================ ====================================================================================== ================== 9 32 91.0 40 GTCGCATCCCTCGGGGTGCGTGAATTGAAAGC # Left flank : AGGGTGGAGACAGATGACAACACCG # Right flank : TTGGCGGATAATAATTATGCAGTTGATAGGATACCGCTTTTTAAGTCGCGTGAACTCGAAAATATGTGTCGAAAAAAGCCGGATATCAAAATTGGATTGCTTCTCAACAGTATAGCTAGACAGATTCAAAAGTAGACATTTTCCATGAATGCCTTCAATGACGGCACGGCTACATGCAATGTGTATCTGTAACAGATTTGTCTTCAAAACCAGATGATTTTGGGGTCATCAAAGGTGGATTGTGGCACAGCATTGTGAAATAATTATAATGCGAGTGTTTTACAAAGGGAGGCAATGTGCATGTATGACGAAGATGATTGGTTAATGATCTCGGGCATTCAACACTTTGTTTTTTGTCGGCGACAATGGGCATTAATTCACATCGAAGATCAATGGGTCGAAAACATTTTGACTTATGAAGGACAAGAAAAACATAAACGGGCAGACGATCCTAAATTTCGTGAGAAACGAAAAGATGTCATTGTGGAACGAGCGCTCCG # Questionable array : NO Score: 4.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.53, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGGGGTGCGTGAATTGAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7615-7910 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEC01000032.1 Schleiferilactobacillus perolens DSM 12744 Scaffold32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7615 32 100.0 32 ................................ TGCTGGCTTCCACATATTGGGCCAGGAAAGCC 7679 32 96.9 33 ...............................T TCATCACTGCCGTAGTACGACGGGATACCAATA 7744 32 96.9 36 ...............................G GCAATAGCTTAATACCCGGTTGCTTCGGCTGTGGCA 7812 32 96.9 35 ...............................C TTTCTGGCCGTCTGACGTGGCTGCGTCGGCGGCTT 7879 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.1 34 GTCGCATCCCTCGGGGTGCGTGAATTGAAAGA # Left flank : TCCACAATTCCGTTAGCCCAATTCTATGGCAAGTGGGTCGGTGCAGATACTTTCACACTTTACTACAATGCCAGTGGTGTGATGGTTATTTCTCAACACGAGAACATGACTAAGACACCAGTCGTTGCTGAACCAATGGCGGATGGCCGGATTTTATTCCGAGCGACCAGTTCAGGTGTGAATAACGTCCTCGCTACCGTTAAGAATGGTCATATGTACTTAAGCCTGGGCGGCTACGATTCTACTGAGCTGACTCGCGATGCTTCTTGGAACGGCCAATTGCCTGAATAAGTCAATATTTAATTTTGGATCCACTCGTCAATGACGGGTGGATCTTTTTTTGCGCGAATGGGGGTCGAACAGGAAATCTACGGGGGGCTCGCGCATTTGATGGTCAATAAAACGCCGTTTTTGGTATAATGTGAATGTAAACACATGACAATTAAGCTTTTTGAATCAATATCTGGTATCAGCTGCGACAAGTGGCACCATTTGTTGCG # Right flank : GGCTGGCTTCCACATATTGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGGGGTGCGTGAATTGAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //