Array 1 18249-17025 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZTU01000034.1 Neisseria meningitidis strain Neisseria meningitidis isolate B160, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18248 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 18182 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 18116 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 18050 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 17984 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 17918 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGGAAAAAATAC 17852 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 17786 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 17720 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 17654 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 17588 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 17522 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 17456 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGGAAAAAATAC 17390 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 17324 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 17258 36 100.0 30 .................................... AAGCCTTTTTTGAACTCGCTGTTCATGAGC 17192 36 100.0 30 .................................... CTTTTCCGGCAGAATAGGCGAGCGCGTCGC 17126 36 100.0 30 .................................... GGTTCGGTTTTCTGTAACGCCATATCGCCA 17060 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //