Array 1 178329-177764 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFLJJ010000004.1 Enterococcus faecalis strain 39-1 39-1_4, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	=====================================	=============================	==================
    178328	    37	 100.0	    29	.....................................	AGTACGGCATTACGCATTCCCCACTTTCT	
    178262	    37	  97.3	    29	....................................G	TAACAAACGATTAACTTTCGCATAGTCAT	
    178196	    37	 100.0	    29	.....................................	ACCGAACTTACACCAACTGCGGATGGTAT	
    178130	    37	  97.3	    29	....................................T	ATCGAAAATGATGTATTAATTTTAGGCTA	
    178064	    37	  97.3	    29	....................................T	ACCTATGCAGACATTAAGAATTTACCAGA	
    177998	    37	  97.3	    29	....................................T	TATTTGAGAATCTGAAACATTTAGTTCAT	
    177932	    37	 100.0	    29	.....................................	TTTTGATGCATTAGCACCAAAATCAAAAG	
    177866	    37	  97.3	    29	............................G........	TTACTTGTTAAGGCTTCAATTATCAATTC	
    177800	    37	 100.0	     0	.....................................	|                            	
==========	======	======	======	=====================================	=============================	==================
         9	    37	  98.5	    29	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA	                             	       

# Left flank :   ATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACATTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATAGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG
# Right flank :  AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTTAAAAACAAACTATCACTACAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT

# Questionable array : NO	 Score: 6.00
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.91   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//