Array 1 37240-37390 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAZ01000011.1 Nocardiopsis valliformis DSM 45023 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37240 29 100.0 32 ............................. TTCTTGCCAGCGCCGTTGTAGTGCAGGACGGC 37301 29 100.0 32 ............................. CGGTCCGAGCAGCGCAAGAAGCAGGCGGTTCC 37362 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCGCCTCCGTCCTCGGCGGCGCCCCCGCCGCCGCGGTGGTCTTCGCCGGTGAGGTCAACAAGCGCACCGCCACCGACCCGCGCGTCACGGAACTCCAGACCCGTGTGTCGGAGGCCAGCACCGACGAACGCGCCGAGCTCAACGCCGAACTCACCGAGGTCCAGTCCGCGGTCCGCGCCGAGAAGCTCAGCGAGGTCGCCACCGAGTTCGACGGCGTCCACAGCATCCAGCGCGCGGTCGAGGTGGGTTCCGTCGACGCCATCATCAGCGCAGCCGAGCTGCGCCCGAAGATCATCGAGGCCATCGCCAAGGGCATGAAGCGCTAATCCCGGACAGCGAATGTGAGCGGCCGGTCCCGAGCGGGACCGGCCGCTCATGTGGTTTCCAGGGGCCCGAAGCGGTCCTTGGTCTGTCATGATGTGCGCCTGGGGCCAGAAACTCGCTGATCCGCGATATGGTCACGCGGAGATAACGCCCCGCGTCGTCGCAGGTCGTTAAGT # Right flank : GCTCCCGCCCCTGCCCCGCTGCACGCTCACGAGGTGACCGAGAACGACGCCGCGATGATCCGCATGATGGCCGGTGCGAACTTCGGCGACGGTGCGACCGTGACCCTGCCGTCCGGGAAGACGATCACCGGCGCGGAGATGCGCAAGTGGATCGAAGCGCAGGACAACTGACCCCACACACAGCAACGCCCCGGACCACACGGCCCAGGGCGTCCCTCGTGTTCCGCCTACTCCTTGACCTCCAGCACCGCCACCGACGGGGCATCCCACGCCGCCGACAACAGGGCCGACTCCATCACAGTGCCCGCCTCCACCTCGAACGGCAGTCGCACCGTCACCGATCCGTTCGGGTTCACATCCTCGTACAGGGCGTCGTCCTCATCCAGGGCGAACAGGGCGTCCGTGTGGTAGCCGTACCGGTTGCCGTCCGCGTCCATCACCTCGGAGTTGTCAACCTCTGGCATCTGCGGGCCGTTCGAGGTGTTCGTCAGCTCCACCTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 85852-84235 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAZ01000027.1 Nocardiopsis valliformis DSM 45023 contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 85851 30 100.0 31 .............................. TCGCCGTGGTGGTGGAACTCGGCACCCGCGG 85790 30 96.7 31 ................T............. GCAAAAGTCGCAAAGGTGATGATCCTTCCCC 85729 30 96.7 31 .............................A GGTACGCCCACACGAGGTTGATGGCGTCCTG 85668 30 96.7 31 .............................C TGGAGCGCATCTGCGCGTGTCCGGCCAGGGG 85607 30 96.7 31 ............................A. GGACTCCAGTGTGGAGAGGGTCTCCTCCCGG 85546 30 96.7 31 .............................A CGCGGTCGGCGGTGTCCCAAAGGGCCCGCGG 85485 30 96.7 31 .............................A CAGCGGCTGCGACGTCCCAGGACGCAGCCGC 85424 30 96.7 31 .............................A GGTCCCGACGCCGCCGGTCGGCGGAGGTCAG 85363 30 100.0 31 .............................. CTCGGAGACGTTCCGGGACGTGGTCACCAGC 85302 30 96.7 31 .............................C CACCGACCCGTGGGCGGACGCGCCCGACCAC 85241 30 96.7 31 .............................C ACACAACAAGAGACCCGTCCCCAAGGGGTTA 85180 30 100.0 31 .............................. GAGTCGGCGGCCCCCGAACAACTCCACGCCC 85119 30 96.7 31 .............................A GTCTCACCAGAGTCCAGACGGAAAACGAGCA 85058 30 100.0 31 .............................. TGTCCACGACGGTGCGCATGTCGGCGCGGGA 84997 30 100.0 31 .............................. GTGTCCTCCAAGGCGGCGGCACGGTCGACGT 84936 30 96.7 31 .............................C GCACCTGACCGACCGGGACCTTCCCGGCGTC 84875 30 96.7 31 .............................A GTTCCGAGGTGATGCGGAGGAGAGCCAGCTC 84814 30 96.7 31 .............................A CGAGTCTACGCATGGAACTCCGGCAACGGCT 84753 30 100.0 31 .............................. TGTCCACGACGGTGCGCATGTCGGCGCGGGA 84692 30 100.0 31 .............................. CCAAGGGTTCCGTACGTACCGGAGCCACCGA 84631 30 96.7 31 .............................T CGGGTGAAACGCCCCGGGCGGGGCGGGCGGG 84570 30 96.7 31 ........................A..... TTCATCGCAGGAAATGCGGAGAGAAGTCCGT 84509 30 96.7 31 .............................C GCGGTGCGCTCGGGCAGCCAGTACAGCGCCA 84448 30 100.0 31 .............................. GCTGCACCTACGTCCCCTAACGCTGAGAGGC 84387 30 100.0 31 .............................. TCATGCGGCGCACGCGCTCAGCGGGCTCGGG 84326 30 93.3 32 .......................A.....A GCTCGGGATCGACCAGGCGCTCGACCCGGGTG 84264 30 90.0 0 ..............T........A.G.... | ========== ====== ====== ====== ============================== ================================ ================== 27 30 97.4 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GCAGCCCCGGGGAGGGCGCCCACGGGGTGATGATGCGCCCCTGCTCGGGTAGCTGGCGTATCCACGTGGCCGGGATCTGGGACACGGCGCAGGTGGAGATCACCCCGTCGAAGGAAGGCGCGCCTCGGGGTGGAAACCGGCTGAGTGCAATGCGGCTTGGGCGGACTGGGCCAGGGTCTGGTCGATCTCCACCGTGGTGACCTGGTCCGACCCTCCTTACCCGAACCCACCGCGTGGCCGCCCACTGGCCCAAGGTTCCAGGCCGCGCGGTGTTTGCCCCGAACGGCGCCCGTGCCCCGGCACGGGCGCCCTTCGCGCTCCCTCGCCAGGTCTGGGGAATGGTGTTCTTCGGCGCCTTCTTTTCCCTGACTGGAGAGCAGTAGGTTGGTGTGGATGGTTGCTGGAGGGTGGGCTTTTTGAGTGATTTGTCTTCGGTGTCCAAGTGCCAACAACTTGCAGATTTGGGCCCCTTGGTGCTCTAAACCTGCAGGTCACCGAGA # Right flank : GCGTAATGTACGCCAGGCCCCCCTTCTTGACCGCTGTGCTGTGGCTGTGGTGGTCAGTGCGGCGGGAGCCCGGACTGGAAGACGGCCTGGCCGAGGACTTGGGCGGTGCCCTGGGCCAAGAGCAAGGTCGTGCTGATGGCCACAGCGGGCCAGCCCCACCAAGAGCGCGGCGCCCGGTGACGACCCCGGGCAGGCGTCGCGGGGGCGTCGGTCAAGGCCGCGAAAGCCTCTTCCAGCTGCTGGGCTTCGCGCTCGGCCTGTTCGCGGCGCTGCCGGTCGACCTCGAACCAGTGCGGAGTCGGGCCGTGCCGGAGCATGTGGGCCACCCGGGGGTTGCCTTCCATCTGCCGCAGCAGCCGCGCCTGGCGCTCGGAGTGGGTTTCCGGTGTGCTGAAGTACGGGCCCAAGCGGCGGTGTTCCTGGGGCTCGGGCGGAGTAACCAGCTGGCGGTTGCTGCCGGGGCGGGAGAAGCGGTGGCCCCGGGGTGCGGCCAGGCGCTG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92311-92038 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAZ01000027.1 Nocardiopsis valliformis DSM 45023 contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92310 29 100.0 32 ............................. ATCACCTACGAGGCCGAAGGGCTCATCAGTGT 92249 29 100.0 32 ............................. GTCGATGGTCATGCCATGAACTCCTCGTCGTG 92188 29 96.6 32 ........T.................... GCCGCGTGCCCGACGTACCAGGTCACCGCCGG 92127 29 100.0 32 ............................. CAGCAGGCTCTGCAGGGAATGGGTGCCCCCGA 92066 29 86.2 0 .................A....CA.C... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : ACCCGACCGGAAACCATCCGTTTCCGGCAAGGATCGGTAAGCCTGTGCCAAGGGTTGTCATGTGGGGCGATGCGGACGGCGTGGCGTGCGTTCCCACCACCCGCCGAGGGTGAGTATGGGCAACGGGCCGCGGGGGAGTTTTCGCAGGTGACCTAGCTCCTCCCGCGGGCCGACCCTCCTTACCGAACCCACCGCGTGGCCGCCCACTGGCCCAAGATTCCAGGCCGCGCGGTGTTTGCCCCGAACGGCGCCCGTGCCCCGGCACGGGCGCCCTTCGCGCTCACTCGCCAGATTTCACGCTGATCCCGGTAGCCCCGCGTACGCGCCAGGGTTGAGGGATGGTGTTCTTCGGTGCCTTCTTTTTCTTAGCGGGAGAGCAGTAGGTTGGGGTGGATGGTTGCTGGAGGGTGGGCTTTTTGAGTGATTTGTCTTCGGTGTCCAAGTGCCAACAACTTGCAGATTTTGGCCTCTTGACGCTCTAAATCCGCAGGTCACCGAGT # Right flank : GGTTTTACGAGCTGATGGAGCTTTTCGGATCGGCCCCTGCTAAGTTCTTTTTGACCATTTCGATGGGGTTTGAGGAAGCCGGTGTGACTCCGGCGCGGTACCGCCACTGTGAACAGCGCCCAGCAGGCGCTGTGAGCCAGATACTCGCCCCACTCGTACCTTTCGAACACGGGGCGGCATACCCCCAGAAAGGCCCGGCGGAGCCGTGCATTCCTTTTCTGTCCTCTCTTCCGAACCCAGGCCGACCGGCCCTCTGATGACGGCGTCCGTCCTGGCCACCGCCGCCGTCCTTCTCACCGGCTGTACGGCCGGGGGAGGCTCCGAGACGGCCGCGGAGGACGGCACCACCACCGTCGAGAACTGCGGGATCGACGTCACTGTCGAAGGACCGCCCGAGCGGGTGTACGCCGCCTACCAGCCCGCGATCGAGATCGCCCACGCACTCGGTATCGCCGACCGTCTGGTGGAGACCGCGTTCCTCGACTCCCAGGTGCTGCCGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 153300-153757 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAZ01000005.1 Nocardiopsis valliformis DSM 45023 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 153300 30 96.7 31 .............................C CCCGAAGCCGGACGTTCACTACCATCCCCAC 153361 30 96.7 32 .............................G GTAGTTGATGGAGGACAGCAGGTCGTTGACGA 153423 30 96.7 31 .............................G CGCTCGGCTGCGTCGCTCACTGGCTCGGGTG 153484 30 100.0 31 .............................. CCACGGACTCCCACGGATCGGTGCTGTCCAT 153545 30 100.0 31 .............................. TCGGGCAGGGCGTGAGGTTGGAGGGCGAGGA 153606 30 96.7 31 .............................C CTGGCCGTCCTCGTCCATGAGGGTGGGCTGT 153667 30 100.0 31 .............................. CCGCGAGCTTCTTGATGCCCTCCTTCTTCAG 153728 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ================================ ================== 8 30 97.5 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : GACGTTCTGGCCCTGGCCGACGTGGTGATCTCCCGCAGCGGCGCCGGAACGATCGCCGAACTCACCGCCCTCGGTAAGGCGGCGGTCTTCATCCCTCTGGCCTCCTCCGCGGGCAACGAGCAGGCGCACAACGCCCGCCACCTCCAGGAATCAGGCGCCGCGGTCGCCCTCTTGGGCGAGGTCACTCCCACCAACCTGCAGGCCGCCGTCGAGCCCTTGCTGGCCGACCCGGCGACCCGTGAGGCCATCGCGGCCCAGGCAAAGTCCCACGGCCGCCCTGACGCCGCCGAACGCCTGGTGGACGTCCTCCTCACGGCCGCAGGCTGACCCCAGTGGGGCCATCCCCGAGAGGGATGGCCCCACTTGCCCCCTGCAAATAGAATCGCCCCGCACGCAAGATCGCACATTTGGACTTTTTGCGAAGGAAATCACCAGTGTCCAACTTTCAGGAAGTTGGAAAAACAACCCCTTGCCACTGGTAAGACACCAGGTCAAAAAGT # Right flank : CCTCCCACCATTCCTGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45-1845 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAZ01000006.1 Nocardiopsis valliformis DSM 45023 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 45 30 96.7 31 .............................T CCGCGAGCTTCTTGATGCCCTCCTTCTTCAG 106 30 93.3 31 ............................TA CCTCCCACCATTTGAGGAGGCCCTCCCAAAT 167 30 96.7 31 .............................C TGTCTCCGGTTTCGAGGCGTGGTTCCGACGG 228 30 96.7 31 .............................T CCGCGAGCTTCTTGATGCCCTCCTTCTTCAG 289 30 93.3 31 ............................TA CCTCCCACCATTCCTGGAGGCCCTCCCAAAT 350 30 96.7 31 .............................C TGTCTCCGGTTTCGAGGCGTGGTTCCGACGG 411 30 93.3 31 ............................TC GCGTCCTTGATGTCCCCCCAGATCTCCTCGG 472 30 93.3 31 ............................TC GCGTCCTTGATGTCCCCCCAGATCTCCTCGG 533 30 100.0 31 .............................. GGTCGGGTTCGGGTGGTGCGGTCCAGGTGGT 594 30 96.7 31 .............................A CCACCAAAGCCATGGCCGCCTGGCTCGCCCC 655 30 100.0 31 .............................. GGTTGGGTGCGACGGAGGACTCCTGGGTGGA 716 30 96.7 31 .............................C GCTGATTCCGTGATGTGGGCGCGTAGGTGGG 777 30 96.7 31 .............................A CATGGTCGACCCCGAGCAGATCATCGCCGAG 838 30 100.0 32 .............................. CCCGGATGGTGTCGGAGTCGATCCCGTCGGTA 900 30 100.0 31 .............................. ACGTCCTGGCCAAAGCCTCCAGCAGCGCGAA 961 30 96.7 31 .............................C GTCCAGACCAGGGACCTCCTGTGAACCGGGG 1022 30 100.0 31 .............................. GGTGGCCACCCACGAGCGTGACCCCGTAGAC 1083 30 100.0 31 .............................. ACCACACCGTGCTCCTGAGACTCCAGGACGG 1144 30 96.7 31 .............................A TCGGGACTCCTGGGCCTAGGAACACGGTGAT 1205 30 96.7 31 .............................C TTGCGCAGGCGTTTCCATTCCGTGGTCCAGG 1266 30 96.7 31 .............................T GGGGACCGGCGGCGCAGTGGGACGCTGGCCT 1327 30 96.7 31 .............................T GGCGCAGGCATCGTTTGCTGTGTCGGGTGCA 1388 30 100.0 32 .............................. GACCACCACGTGAACACCATGACCATCCCGGC 1450 30 100.0 31 .............................. GTTGACGAGTGCTGATTTGCCATATCCGGGG 1511 30 96.7 31 .............................C ACACCCCCGCTGGCCGGTGAGGAGAGCACAC 1572 30 96.7 31 .............................C CCGGGGCATGCGCGCGGTCTCGGCCTCGGAT 1633 30 96.7 31 .............................A CCGACGAGACATCAGGCGTGTCCTACCGCCA 1694 30 100.0 31 .............................. GCCCCGGCCCGCGACCCAACCCTGGTGTGGC 1755 30 96.7 31 ............................T. CCGGGGGTCCGCTCAACGGCCCGCCACCCCT 1816 30 90.0 0 .......................AA....C | ========== ====== ====== ====== ============================== ================================ ================== 30 30 97.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GGGGATGGACCCCTGTCTCCGGTTTCGAGGCGTGGTTCCGACGGC # Right flank : CCCGAGTAGAGGTACGAACGCGAACCCGAATGGTTTGTCTCTGCTCGGGGGCTCCGTACCACAGGGGTGTCGCTTTTGTTGGTTAAATGGTGAATTCGCTTTGGCCACATCAGGTCTGGAGAGAGGTCGATTCTTGGCCTGGAATGTTGGTGGGACCCATTTAGATGGGCAGCATGGACTCCGGACCCCCTCCCTGGCCCTGGAAGGACTCCCTCTCTGAGGTGGCTCGCTCTGTGTGGGCCAAGCACGACTACGACTCCGACGGCTGGCTTCCGCTTTACCGGCACATGGCCGACAGCGCCTTTGTCGCTGGCAGGCTCTGGGACGAATGGCTTCCCCGGCAGGCTCGGGACGTCATCGGTGTGGCGCTACCCAATAGCAGCGAGGACGCTCGGCGGCTTGCGGTATGGCTCGCGGCCACACATGACATCGGTAAGGCCACCCCCGCCTTCGCCTGCCAGGTCGAACACCTCGCGGACGACATGCGCGCGCACGGCCTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3304-6396 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAZ01000055.1 Nocardiopsis valliformis DSM 45023 contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 3304 30 96.7 31 .............................A CGCGACCCGTGGCAGAGCAACACAGAAAATA 3365 30 96.7 31 .............................T GGCCCCATCCGTTGCCCAGCCGGATGATCGG 3426 30 93.3 31 ............................TA CGTCGTGATCGCCAGCCACTTCTGCGCCATG 3487 30 96.7 31 .............................T CCCTCAGCACCGCCGCCAGCCACCTCCGCCA 3548 30 96.7 31 .............................A CGCGACCCGTGGCAGAGCAACACAGAAAATA 3609 30 96.7 31 .............................T GGCCCCATCCGTTGCCCAGCCGGATGATCGG 3670 30 93.3 31 ............................TA CGTCGTGATCGCCAGCCACTTCTGCGCCATG 3731 30 96.7 31 .............................A GGTCGAGGTCGCACGCTTCGAAGAGGTCGGT 3792 30 93.3 31 ............................TA CGTCGTGATCGCCAGCCACTTCTGCGCCATG 3853 30 96.7 31 .............................A GGTCGAGGTCGCACGCTTCGAAGAGGTCGGT 3914 30 96.7 31 .............................C AATACACCGGTGTAACGGTTTGCTGGTGTAA 3975 30 93.3 31 .......................A.....A CTAACGTGGATCCGCAGCTCAGGTTCGGGCT 4036 30 96.7 31 .............................A AATCGAGCTCCACCGCAACGGTTTGTCAAAC 4097 30 96.7 31 .............................T GGGGGTGGATCCAGGGCTCAGCATCGGGCAG 4158 30 100.0 31 .............................. CCGCCTACTACGCCAAGGAGGTCGCGGATCT 4219 30 96.7 31 .............................A CTGCTGGAGGCGGGAGTCGCCTTCTTTAGTT 4280 30 96.7 31 .............................C CTGACTCACGTGAGCGCAGCGGAGCTTGCCG 4341 30 100.0 31 .............................. GGGCCCGGGCGGCAGCATCGGTGCCGTCGAT 4402 30 96.7 31 .............................A GCGCGAACCCCTCCGTCGCCCCCAACCTGCC 4463 30 100.0 31 .............................. TGCCCAACGCCCGATACCGGGACGGGGAGGT 4524 30 96.7 31 .............................C AGGTGATCTGGTCGACCATGGTGTCGGTCTG 4585 30 93.3 31 ............................TC CATGTCTGTAGGTCTGTTTACAGAGTCGGGG 4646 30 96.7 31 .............................T CTGCCTGTCCAGTGGTCGCGGCGATCTGAGC 4707 30 100.0 31 .............................. CGGGCACCCACTCGTCCCGCAGCTTCCGGTA 4768 30 96.7 31 .............................C AGACGGTGCGGACTCCGAGGGCGCGGCCGAG 4829 30 100.0 32 .............................. CAGGTCAAGGGGGTGCCCGCATGGCATGGGAA 4891 30 100.0 31 .............................. GGACCGTGCCCGCCGCGCCCGGCAGAAAGCC 4952 30 96.7 31 .............................C AGCCGCCCACGACGGCGTACCCGGCCGCGAT 5013 30 100.0 31 .............................. AGGAAGGGGCGGCCTGAGTGGTGTCAGGCCG 5074 30 96.7 31 .............................T TTCCCTTGAGGCTGCCAACCATGGAGGTCAC 5135 30 96.7 31 .............................T CGAATGAACCGCCCCGCGAGCATGAAGCCTG 5196 30 96.7 31 .............................T CGGGCAACTCGTGCTCGAGGTCCCCACGGCG 5257 30 96.7 31 .............................A CCCCGGTGCGCATCGCCATCAGCGCGGACGG 5318 30 100.0 31 .............................. ATCGCAGCCGCACCCTCGATGCCCCCTGGGG 5379 30 96.7 31 .............................T CCCTCAGCACCGCCGCCAGCCACCTCCGCCA 5440 30 96.7 31 .............................C CGACCTCCTGGGCGTCGATCTCCTGGCACCG 5501 30 96.7 31 .............................T ACCGCCTGTCCGGGGCCGGGCGCCCGATCGA 5562 30 100.0 31 .............................. GTCGTCGGCCGAACGAGACGCCGTTCGAGCT 5623 30 96.7 31 .............................C GTCTGGCCGAGGCTGGCCGCATCGTTGCGGA 5684 30 96.7 31 .............................A CGTCGATTCGCTCGACCAGGATGCGCACGAG 5745 30 100.0 31 .............................. CGCCCGACTGGCCCTGACCGGGTCACGCCGC 5806 30 100.0 31 .............................. GCCGCCGCCACGTCGACGTGTGGCTTCCCGT 5867 30 96.7 31 .............................T TCACGTTGAGCGGGCAGGGTGAGCCGGTCGA 5928 30 100.0 31 .............................. CTGTCCACTCCGTGCTCGGGTCCGAGGCGAT 5989 30 100.0 31 .............................. ATCGCTACCTGCGCGAACGCCTGCACCAACT 6050 30 100.0 31 .............................. GCGGCTGCCATCGCCATAGGGATCGCCTCAC 6111 30 96.7 31 .............................A GCTCGACCATGTCCGCGGGCAGGGACGGCAG 6172 30 100.0 31 .............................. CGAGCTCCATCACCGGCCACCAAGCCCACAT 6233 30 96.7 31 .............................C GAACCCCGGACCCGTTCGCCAGCATTGCGGC 6294 30 100.0 42 .............................. GGGTGGGCCGTTGGGGTGGGGCACTGGGCTTCCGGCGACCGG 6366 30 80.0 0 G..AA...................TG..T. | T [6391] ========== ====== ====== ====== ============================== ========================================== ================== 51 30 97.1 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGACGACCAGCTGCTGGAGGCCGGACGGCACCATCCCGACGAGGTGGTGTGGTGACCGTCATCGTGCTTGCGAAGTGTCCCAAGGGGCTTAGGGGTTTTCTCAGCCGCTGGCTGATGGAGATCTCGTCAGGGGTGTTCATCGGAAATCCATCCCGAAGAGTGCGAGAGGCGTTGTGGGCCGAAGTCCAGGAGTACGCGAACAACGGCCGAGCCCTGCTCGTCTACGGGAACGATTCTGAACAGGGTTTCGCCTTCGAAACCTTCGAGCACGACTGGGAGCCGAAGGACCACGAAGGGCTGGTTCTGATGCACCGCCCCAAGAAGCCCACCGGGCGAAGCCCAGCCACCCCGAAAACCGGATGGAGCAAGGCTTCCAAACGGAGAAGGTTCGGGAAGAGATGAGCCGTATGGGGTTTTTGGTAAATATGCGGCCATTGTCTGTTTTTCGAGAAGTTGGAAAACAGGCCACTTGCCGTCGGTAAGTTCCCAGGTCAAAAAGT # Right flank : GGTCCGTTTCGGAGCGCGTCCCCCCGCCTTCTGCTGAGGCCGGGACTATCCGGCCTTAGCAGGGCCGCCGCCCTGCGGGGCGGCTCCCTCAACCCTGCTCTCTTCCAACTCAGGCCCCGGCTCGGGTTGCGTTTTGGCGGAGGTGGTGCTCTCACTCAGGTTCGCGTTCCTGATGAACCAGGAGGCCACGGCTGCCGTGAGGACCCCGACCAGGGCGATGCCGATGAGCATCAGGCCCACCGCCACCAGCCTTCCCTCCGTCGTGACCGGGTAGTAGTCGCCGTATCCCACCGTCGTCACTGTCACGACGGACCACCACAGGGCGTCCCCGAACTCGGTGATGTTGGCTCCGGGCACGTCCTGTTCGGCGTCGAGCACCGTGATGGCGCCCACGAAGATCGTCAGGGCCGATGTGGCGGCCACATACAGGGACACGCGGCCAGCCAGCGCTCCGGCCATCGAACGGTTCAGCATGCGGATGAGGGCGAGCATGCGCAGCA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 386059-385907 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAZ01000008.1 Nocardiopsis valliformis DSM 45023 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 386058 30 93.3 31 ............................GC CCCGGGCCTCAGCCCGAAAGCGCACGACCAC 385997 30 96.7 31 .............................A GCGCTTAGGGGCGTCGAATCGGTTCGGCCAA 385936 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 GTGAGCCCCGCGCACGCGGGGATGGACCCG # Left flank : TCAACGCCCTCGCCAGCACCTGGGGCAGCGAGCACACCCGCAACGGTTCCGCGGTGTTCTTCACCCTCGACTGGGAGTCTCCGGACCCGCTACCGAAACCCGGTTCCTTCGCTGTGCTCACCAGTCCGCCCCTGGGCCGGGGGTGAGGATGGTCGGCTACAGCGTCTTCCCAAGCCAAGAGATCCAGCAGCTCCGCAAGGAGTTCCCGCACCACCTGATCTACGAACTCCACAACCGAAACGGCAAACCGGTCTTCGTGGCGACACTTCTCCGCCGGAGCTGCCCATGCCCGCCTGACCTCGTCACCGCTCCTACTCCCACCGCTCTGCGCGAGGCCCTCGCTCCCATCCGCTAACAGCAAGGGCCGGGCGATATCACCCCCGCCTGGCCCACTAAGGCCCTCTATCATGTGATTCGGTGCAGGGCCGAGATCTCGGAGACCGTGGCTTAAGGCTAGGTTGCGGGAAGATAACGGCCCGCATTGTCGCAGGTCGTTAACT # Right flank : GAAGAAACAGATTGACAGTCGTAGCAGTCCCGGAATCCCATCGAGGGCGCAAGCCCGGCCTCCGTGGCTCGGCCGGTGAAGGCCCAAGGCCGCCTTGAACCCCCGTGATCGGAGTGACCACCGTCCCCGGCCCCGGTCGGCGGTTTTCGATGGCCCTCCTGGGCGCGTTCGTGGCCAGAGCAGTGGGGAGAGCAGCCCTGAAGACCACCGTCCGCAGTTCTAGGCGGGCATGGAAACCACTAGGCTACTCTTCGTGATTATTCAACTCCCCTCAGTTTTGTCCGGGATGTGGGTGCAGGCGGCCCCCCTCGCTGGAAACGGTTCACGGGTGCGAGGGCGCACTCCCGCGGCCACCGCGCAGGACCAGCGATGAGCGGGTACACGAGGACGGGTTCCCCGCTGATCGCGGAGCGGGGCACCGACACCTACCTTGCGCGTGCCTTCGAGGTCTGCCGCAGGATCCACACGGGTGCGGACCACCTCTCTCCGCAGGTCGTCGA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //