Array 1 32454-30495 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMD01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain RS36 scaffold2_size274059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32453 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 32392 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 32331 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 32270 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 32208 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 32147 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 32086 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 32025 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 31964 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 31903 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 31842 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 31781 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 31720 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 31659 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 31598 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 31537 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 31476 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 31415 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 31354 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 31293 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 31235 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 31174 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 31113 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 31052 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 30991 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 30930 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 30869 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 30808 29 100.0 11 ............................. CGGCCAGCCAT Deletion [30769] 30768 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 30707 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 30646 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 30585 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30524 29 93.1 0 A...........T................ | A [30497] ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50352-48736 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMD01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain RS36 scaffold2_size274059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50351 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 50289 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 50228 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 50167 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 50106 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 50045 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 49984 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 49923 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 49862 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 49801 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 49740 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 49679 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 49618 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 49557 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 49496 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 49435 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 49374 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 49313 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 49251 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 49190 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 49129 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 49068 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 49007 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 48946 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 48885 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 48824 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 48763 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //