Array 1 3274032-3273699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031264.1 Streptacidiphilus bronchialis strain DSM 106435 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3274031 29 100.0 32 ............................. CACCAGTGGTCCACGCGCGGGGCCCGGTCCTG 3273970 29 100.0 32 ............................. GAGACTCGCTACCCGGTCCTGCGGGTCGATCT 3273909 29 100.0 32 ............................. ACCACCTTCCCGCTGCGGCTCGCCCCCGCCGA 3273848 29 93.1 33 .........A...............T... CTCCGCCGCGACGGCTACGCCGTACTCGGCGCC 3273786 29 96.6 31 .........................T... ACCGCGCGCTTCCTGCGCAAGACACTCAAAG 3273726 28 75.9 0 .....TG...-..T.......G...T.T. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 94.3 32 GTGCTCCCCGCGCCTGCGGGGATGGCCCC # Left flank : CTGCCTCCCCCGCACCCCAGGCGCGGCAGAGGCAGCGCAACGCCATCACGCCCGACGGGGGGCGGGGCACCCTGCGCTGTGCCCCCGGCGCTCCTGCGGGACCCTGAGCAACAACGGGACGGGAGAAGAAGGGTGGCCCCTTCACCGGAAGACCCCGCTGCTGGCGGGTCCGGCGGCGAGATCGACGAGGGTGTACCCGTGGAGTTCCCTGGCGAGTCTTGCAGCGAGGAGGCACCGGAAGCAGGGGTCGGTGTAGCGGATGAGAACGTCGATGGCTGGCATGGGCGCAACATACTTGGGCGCTGGCTGGCGGGCCTGCGCGCTCAGTGTCGTCCCGTGTCTGCTGGACCCTCGATGGGTTTGTGGGTGTGGGTTCGCATAATTGCCGTCTAAGACTTGACCGATTTATGCACATTAACGGTAGTTCACGTCTTATGACGGTTTCTTTAGAAGTCATCGAAATGAGCGCCCAAGGGCCTCAAACCCGCAGGTCAATCAGT # Right flank : GCGCTGGGGTTCTTTGGCCCTGTGCCCGTCGCGGCAGGCAACAGGCCGCGTGCTGGTGGGCGGGCCCGGCAGAGCTACGCCGCGTCACCTCGGACGTCGCAGCCCGGCGCTTGCCCGGGCATGGCCGGTCGCGGGACCGCCCGGCGGTCGGCAACGGGCGGCGCGCGCCGGAACCGGGCCGGGGCCGGGCACGCCCCCGACGGTGCCGTGCCCGGCCCCGGCGCGCGCCGGGTGTACCCGCTCAGCCGCAGTGCCGGAAGGCATCCGTGGTGCCGGCGGTGGTGACCAGGCCCGTCCCCTGGTCCAGGACCACGATGATGGCGGGTTCGGTCAGCCCGGTGCGGCACGCGAGGAACGCGACGGGCTGCCAGTCCGTCAGGCGGCCACTGGCGTCGGCCGTGAGTGAATTCAGCGAGAGCGGGCCGGTCGTGTTGATCCGCACCGCGTAGAACCGCACCGTGCCGTTGGGCGTCAGCCCGCTGCCGGTGGCGTACAGGTAG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3284917-3284156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031264.1 Streptacidiphilus bronchialis strain DSM 106435 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3284916 29 100.0 32 ............................. GCCTCCCCGGTCGGCGTCGACTCGGCGACGAC 3284855 29 100.0 32 ............................. CTCGACACGGTCGTGGGCGACGCCGCCGCCGT 3284794 29 100.0 32 ............................. GTGTGCAGGCCGGCGACGCTGCCGGTCTCGTA 3284733 29 100.0 32 ............................. CCTGTCGCAGACCCGCGACGGCTGGGATGTGG 3284672 29 100.0 32 ............................. TCGCAGTCCTGCTTGAGGCGGCCGCGCTGGGG 3284611 29 100.0 32 ............................. CTCACGCATCCTGGATCGATCCCGTGTAGGCA 3284550 29 100.0 32 ............................. GGCCAGGCCTCCAGGCGGGGCCTGGTGTACGG 3284489 29 100.0 32 ............................. CAGGGTGGATCGGCAGGAGGTCTGCCTTGCGG 3284428 29 100.0 32 ............................. TCCCAGGGACCCTTCGTCCACATGACGTGATG 3284367 29 100.0 32 ............................. GCTGAGGTCTACGTCGACTGCCAGAACCGATT 3284306 29 100.0 32 ............................. TGCTTCGTGGTCTCGACCGCCTGCTGCCCGAA 3284245 29 100.0 32 ............................. GACGATCAGCAGACCCGAAACGACATCACGGT 3284184 29 93.1 0 .........................GG.. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGCTCCCCGCGCCTGCGGGGATGGCCCC # Left flank : CTCCCGCGTTCGCCCTTAAGGAGATCGGTGTCCGCACGCCATGGCGCGGCACCGGCGCGGCCCGGTGCATCCACGACGCAATGGTCACCAGGCGCCCCGAGCAGCAGGTCACCTTGATGGTCAACCCGGCTGCCGGGGACGGCAAAAACCTGGCACTGCCATGATCCGCCCCCGCCGACCGGACGACGGCGACCGCTGACCAACGCCTCGGGTCGCTGTCGCGGCGGATGCGCCAGGACGGCGGCGAGTTCGCGGCGCCGGTGCCCGGCCAGCTTCCTCAACCAGCCCAGTGCGGGGCGCACGTGCGCTGTGATGCTGTGCGGCGGCGGCTTCTGGGCATCCCGCTGGCATTTCGGTGTACGACCGTATGGTTGACGCATGGATCTCGATGAAGATGCGAGTGGATTGCTCCAGAAATGATGCATTCACGTCGTACGTCCGTATCTGCAGAAGTCATCGAAACCAGCACCTTCGGTCTCCAAACGCGCAGGTCAATTAGT # Right flank : TGTTTGGATCGTCACCCCCCAAGGGCGTCTCCGAGTGCTTTCGAACCCGCAGGGATGCCACGTCGGGAACTCCGGCAGGGAACCTGCCGCTCGTGACCCGGCAGAGGCAGGCCCGATGCCGCCTCCAGGGCGGGCTGCCGCGCGTGGCGGCCGGAGGCATATTGCGCCTGACAGTATTGGTCATTTGAATTCGTGATTGGGCGTCACCTATCACGCGAAGAACGATTATGGTCAAAATCGATCGCTCGGGCCAGGAGCGCTCATCGTTGTCAGACCCAGAGTGTTCAATGCCGTCATGCACGAGGAAACACCTCCCCAGACCAACGGCCGATGGGCGCGGTTGAGCCGCGCTGCGCGGACCGTCTGGGCGAAGCATGACCGCGCCACGGAGACGTGGTTGCCGTTGTGGCGGCATCTGGCCGACAGTGCGGCTGTGGCGGGGTTGCTGTGGGATCGGTGGTTGCCTCGGAATGTGAAGGAGATGGTCGCCGAGGTGCTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3298463-3297214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031264.1 Streptacidiphilus bronchialis strain DSM 106435 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3298462 29 100.0 32 ............................. GCCGTCTGCTACACCCCCCAGCCCGCCGTCGA 3298401 29 100.0 32 ............................. GACGACCGGGCCGTTGAAGCCCACCGGCAACG 3298340 29 100.0 33 ............................. TGGTCCAGCAGTACGGCCTCGCACGGAGTACCG 3298278 29 100.0 32 ............................. GCGCGAAAGCCCCCGTCCGGCCCTTCGCGGGC 3298217 29 100.0 32 ............................. TGGCGGGCGAGCTGCCCGGCCGCGAAGACACT 3298156 29 96.6 32 ............................G TGACAGACCGCGCGTGGTGGCCACAGCATTCT 3298095 29 100.0 32 ............................. TCGGACGGCGCGGTGATGGCCCGGCGCCTGAA 3298034 29 100.0 32 ............................. TACATCACCGAGCGGTACGGGTACGTCGGTGC 3297973 29 100.0 32 ............................. CGGATCAGACCTCGACGGTTCCCTCGTACAGG 3297912 29 100.0 32 ............................. GTCTGGCCGCTGCTGCCCCGCCGCACCACCGA 3297851 29 100.0 32 ............................. GATCACGATGCGATCAGGCCGTTCTTGCAGGT 3297790 29 96.6 32 ............................T GCGACGGCGCAGCAGCCCCCGGCCGTCGGCAC 3297729 29 100.0 32 ............................. CTGACGCGCTCGGCGCTGAACACGGCCCTGGG 3297668 29 100.0 32 ............................. GCCGGCACTGGATTTCTTCACGGCTGCGTCGG 3297607 29 100.0 32 ............................. GCGCCCGCGCCAGGGGACTGCTACAGCGACTA 3297546 29 100.0 32 ............................. ACCACACCGCCTGCCACCCCCTGTCGCCACAC 3297485 29 100.0 32 ............................. GACGCTCTCCCCACCTCGCTCCGCCAGGAGCT 3297424 29 100.0 32 ............................. GTGATCTCCAACTCCTCGGGCAGTTCCGCCTG 3297363 29 96.6 31 ..............C.............. ATCCCCCCACCTCCACCCCTTCGGGCCGTGT 3297303 29 89.7 32 ..T......................C..G TTCACCCCGCCCCGGCTGGGGCAGCGCAAGGA 3297242 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 GTGCTCCCCGCGCCTGCGGGGATGGTCCC # Left flank : CCACGGCACCACGTGACGGTCGCCCTGGACCTGGCGCCACTTACGCAGCCTGTCGTCGGTACGGCAGTCCTTGATCGACCGGTACGCCGACGTGCGGACTCCGCTGCTGCGCCTGCTGAACCATGCGGTGGCCACCTTCGCGGACCGGGTGGACCGGCATGGTGGCGAGCTGGGATTCGAGGTGGTGCTCGGATACGACGACGGCGAGCCGTGGGGTACGCCTACGGCAACTTGTCGGGCCGGAGGGCCGTCGGCGAACGCGCACGGCCAGACCCTGTCCGCCGGGTGGGTCGAAGCCCCGACCCTGGCGTTCTTCGCCGCTTCGGGCCGCTGTTACAGGGCTTCTGGGCCTCGGCTGTGCGGCCGTATGGTTGGCGCATGGATCTCGAAGAAGATGTGAGCGGATTCCTCCCGTAATGCCCTGTTCGCGTCTCATGCCGGTATCTGTAGAAGTGATTGAAATCAGCACCTCCGGCCTGCAAACCTGCAGGTCAATTAGT # Right flank : GGCGTCTTCCCCTACGAGTGGGCCTCGGAGTGGCTACGTCTACACAGTGCCGCAGCGCGGGACGTACGTCGCGGATCGGTCCGCCGGCGAGCCTCCGCAGCAGCCTGGGGAGTCGTCGGCGCCGTGACGTGCGTAAGCCCCGGCCGCCTTGGAAGGCAATCCGTGTGAGGTGGTGGCCGGGGCTCGGGCGCAGCCTAATGGGTCTGCCCCGGCGGGGGCATCTCTCCGCCGGTAATGCGGTGACTTCGAAGTAGGGGGCGTTAGGCATTTTCGGTCTCCGCCGCTTTCCTGATCAATTCTGCGGCGGTGGCGGTATCGGCTTGGCGCAGGAAGCAAATTACAAGAGACCGTACCTTTCGGATCTCGGCTTCCGTCTCTCGTGCGAATGCTGACGGGGGAACTTCAGCTCGGAAGTGCGCATCCTTGATGGCTAGACCGATAAGCTTCTCTGCCACCCAAAGGCGCGTTCGCTCGTGAAGCGCAAAAGTTAGGTGGTAGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3302610-3301113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031264.1 Streptacidiphilus bronchialis strain DSM 106435 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3302609 29 96.6 32 .T........................... TCGTGGCCGGCCTTCCTGTCGCGGCGCCGGGG 3302548 29 96.6 32 .T........................... TGGAGACCGCCGCCGGGCGGCGGTGCGGCTGC 3302487 29 96.6 32 .T........................... GCCCTGCGCCTTGCCCTGCGGGAGCACTCCCC 3302426 29 96.6 32 .T........................... TACTCGGCGAACAACAGCCAGTGGATGGACAT 3302365 29 96.6 32 .T........................... TCGGCGCTGGTGCCGTTCGCGGCGTTCAGCTG 3302304 29 96.6 32 .T........................... GACTGGTGCTCGTACACGGGGTGGGCCCGGAT 3302243 29 96.6 32 .T........................... AGCACGAAGCCGTACTTCAAGTTGCCGAAAGG 3302182 29 96.6 32 .T........................... ACGTTCAGACCGCTCCCCCGGGCGTGGGACGA 3302121 29 100.0 32 ............................. CGGTGAAGGCCCCCTGGCGCCTAGTCGGCTCC 3302060 29 100.0 32 ............................. AGCAGCTCGCGGCTGGTCTGGTCGAGTCCAGG 3301999 29 100.0 32 ............................. GAGACGTGCGGCGGCTGCGGGCACCCGCTCAC 3301938 29 100.0 32 ............................. CGGCACATCAATGGTTTCCTCCGCTGGGTGGC 3301877 29 100.0 32 ............................. GAAGCCCGGGACCGGCTCGCGGGCACGTATCC 3301816 29 100.0 33 ............................. GGTGATGGTGGGCCGCTTCGTCTGCTGGCCCGA 3301754 29 100.0 32 ............................. ACGGATTACACCGCCCGTGCCCTGAAGGCGGG 3301693 29 100.0 32 ............................. TCAATGGGCCAATCATGTTGACACGAGAACTG 3301632 29 100.0 32 ............................. CCGCACGAAAATCGGAGACGGCGAGATCACCA 3301571 29 100.0 32 ............................. AACACGCCCACCAGCATCGCCCTCGACACAGA 3301510 29 100.0 32 ............................. TGTGGGAACCCTTCGAGCAGCGCCATGTAGCG 3301449 29 100.0 33 ............................. TTCGATGCGAGGGACGAGTACGAGGAGCCACCG 3301387 29 93.1 32 .T......................G.... TGGTGCTGATGGCTCCTGATTCACACTGGTGT 3301326 29 79.3 32 GT....................C.GT..A AACACGGGCGGTAGCGGACCGCTGGTCCGGGA 3301265 29 86.2 32 GT......................GT... ACCACCGTTACGGCGGTCGCCCAGGCGACCAT 3301204 29 86.2 31 GT........T.............G.... TCAACTCGACCCCTACCGCAGCCCCGCACCT T,G [3301178,3301183] 3301142 29 69.0 0 GT........T.T.C..C....G.G.G.. | C [3301124] ========== ====== ====== ====== ============================= ================================= ================== 25 29 95.5 32 CCGCTCCCCGCGCCTGCGGGGATGACCCC # Left flank : TATGGCTGGCGATGAGCGCATCGGGCGCCCTCTGAACCCGCTGTGCAACGAGAAACCCGGACGCCCCCGCACTGTGCGCCCAGAACCTCGCCCCACCGCGCCACCCCGGCTAACGTCCCTGTGTGCAACCAGAGCCGGTCCGCCGGGGAGCACGCCACCACAACCGCGGGGGAGTCGCGGAGGCGCGCTCCCCGACGAACCGGCCGCCCCGTTCCACGTGAAACACCTGCGCCCAGCGATAGGCCACACCACGACCACGGCTTCTCATGGCGTGACAGTGGCGCACCCACAGAGCCGTTCGCCATCCTGGGGGATACGAATCGGCGGCGCCGTCGAGTGCTCCGCCCTCGGCTAGGCTGCCGTCACTGTGCGCCGCCGCCTGACGGCCCGTGCACGGAACACAGGGGGATGCCGAAATGCCCTTCCCGCCCTATATGCCGGTTTCCGCAGAAGTAATCAAAACCCGCCCCTCCAGCTCATAAACCCGCAGGTCACCAAGC # Right flank : ACCGTCTGAGGCGTACGCGAAGGGGGCGGTTGCTCGCGGGAGTGGTCAGAGGCTGATCAGCCGTACGCCGTTGCCGCAGAGCTTGGCCATGTCGTCGGCGCCGGAGGTCATCGCCGAGCAGTTGGTGTCTGATCTGGCGGGCGACCGCCTCGGCCACGTAGCCGGAGACGTTGTCTGTCAGCTTCTTGATCTCTGCCACCTGTTCGGTGGGCAGGGTGACGGTGATACGCGTCGTAGCAGCCACAGGGCAAGCATGCTGGAGTACGCACGCTAATGGATCAGGTGAACCTCGTGGCGGGGCTGCGCTCCGTGTTCAGCCTCTCCCAGCGGATTGTCGGACCAGACCTACGGGGTGCTCCGGTCGGGTCCCGTGGCGGAAGGGCGAGCCGTACGTAGGCGCGACCATTGCTGGCGCAGGTATGGCGCGGTGGCCACCCTCGCGGATCGGGTGGACCGGCATGGTGGCGAGCCGGGATTCGAGGCGGTGCTCGGGTACGCCT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCCTGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5133847-5133514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031264.1 Streptacidiphilus bronchialis strain DSM 106435 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5133846 29 100.0 31 ............................. GCTCTCGGCGCGGTCTGGGACGGCGACCTCA 5133786 29 100.0 32 ............................. TGCTCCAGGACCCGGCGCACCTAGGCGTCCAG 5133725 29 100.0 32 ............................. CGATGATCACGGATGTGCGGCGGATCGCCAAC 5133664 29 100.0 32 ............................. CACCAGTCCCGACGGCACGAGCAGCGCGCCGC 5133603 29 100.0 32 ............................. CCGTCCGTCACGGCCGAGCGGATCGCGGTGGC 5133542 29 96.6 0 .......G..................... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : GAGCCTCCTCGCCCCCGGAGAGGCCGACCCCCTGCCGGACGGGAAGGCCGTGGACATGGTCAACCTCTGGGACCCGGCGACGGGTTCCGTCCCTGCCGGCGTCAACTACGCCACCCAGGCGGACTCGGAGTGACCTGCCCGCCAACCTCTCAGAGCGGCGGAAACCCATGCCGTCCATGACCGTCCTGGCCACCACCGCCGTCCCCGACCACGTCCGGGGCGCCCTCACCCGCTGGATGCTCGAGCCGACACCGGGCCTCTACGTCGGCACCCTCTCCGCCCGCGTCCGCGACGAACTCTGGTCCGTCGTCTGCGCCTCCATCGACACTGGCGCCGCCGTCCTCATGTACCCCGAAGCCAACGAACAGGGCTTCGCACTCCACACCGCAGGCGAACGCCGCCGCATCCCCGTCGACTTCGACGGGCTCACTCTCATCGCCTTCCGACCCGAGGAGTACCAGGACGCAGCAGATCCCTTCTAGCGCCCCAGGTCAACAAGC # Right flank : AACACGGTCGTCGCGACGGGGTTGCGGGAATCAGTTGGCGATGGCGGAGGGGCCGTCGAAGTCCTCGGCCAGGGCGTCCATAAGCAGTTCGTCGCAGACCTGGCCGAGCCAGTAGCCGGACTGCCTCAGGCGTCCGGCGTGCCGGAAGCCCGCTCGCTCATAGGCGGTGACAGCCCCGGTGTTTGGGGCCAGGACCTTCAGCCAGACCATGCGCACATTGGTGATGTGGAACGCGTAGTCCAGGGTCAGCCTGGTGGCCTCGGCGCCCAGGCCACGGCTGCGAGTGTGCGGCGCGAGCATGATGATGTACTCGGCGGTCCGTACGGCGTGATCGATGATCAGCGCGGTGGTACCGACCGGCTCCGCCTCGTCCCTGCTGGTGTCGTAGACCGTGAACCGGGGCAAGTCGGCCAGGTCTCGCAGTTGGTGCGCCATCCCCTCCGTACGGGCCTCCAAAGACTCGGGCGTCTGTCGGCCGTAGCCGACCAGCGACCTGGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 5143793-5145041 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031264.1 Streptacidiphilus bronchialis strain DSM 106435 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5143793 29 96.6 33 ..T.......................... GCGGGTTTCCGCGCCGATCAGGCGATCACCGCA 5143855 29 100.0 32 ............................. GCGATCACGGCCAGGGCGGAGGCGAGGGCGAC 5143916 29 100.0 32 ............................. GCCTGCGCGCCGTCCTAGCCCACCACATCATC 5143977 29 100.0 32 ............................. TTGGACTTGGCCACTCTCCGCGACTCTCGGCG 5144038 29 100.0 32 ............................. CATGGTGAGGTCGTACGGGGCGTTCATGATGA 5144099 29 100.0 32 ............................. CTGGAGGAGGGAGCCACCCAGCGAGAGCTGGC 5144160 29 100.0 32 ............................. CCACGCACGTCGGTGGATGGGACACTGACCGG 5144221 29 100.0 32 ............................. TAGGCCGCCGCCGGCGCCCGCGCCCTCGACCG 5144282 29 100.0 32 ............................. AGGTCGACGGTGGCGGGCCAGGCCCATGCTCG 5144343 29 100.0 32 ............................. CACCGATCATGGCGGGCCGCAGCTAGGGGCGG 5144404 29 100.0 32 ............................. CTGTACGCCAACATCCGGCCGCAGCTCAACGA 5144465 29 100.0 32 ............................. ACCGCCAGGCCGACCGCGCCGACCGTCGTGAA 5144526 29 96.6 32 ......T...................... TCGGCCACCGCAGGCGACGGCGCGCCCTCCGA 5144587 29 100.0 32 ............................. CGCTGAAGCGGGCCCGCTGGCCCCTGCCGACG 5144648 29 100.0 32 ............................. ACCTTCCGGTCCGGCCGCCCGTAGATCGGGTC 5144709 29 100.0 32 ............................. CTCCTCGGCGATGCCTTGAACACGCTGGGTGT 5144770 29 100.0 32 ............................. CTCGGCCCGTTGCCCATGGGCATATGGGTCCT 5144831 29 96.6 32 ........T.................... GCCTGGCGGCGGATGATCACCCACGTGGCCCC 5144892 29 100.0 32 ............................. CGCAGCGCGGCGCCGAGCGGGCCCGCGACCGA 5144953 29 100.0 32 ............................. GTCACCGAACGGCAGCGCCATTTCGGTGCGGC 5145014 28 82.8 0 ..........G.TG...-.........G. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.7 32 GTGCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : TGCGGCAGCGCCCGGCTCGTGGCGCACTCATGACGGATCTTCTCGGCCTGGCTGTCGCGCTCCCGGTCATGCGCGTACGTCTCCTCGCTGAGGAACGCGCAGTGTGCGGGCCTGTCCTGGGCAGCCATGTCCTGGAACCGGGGAAGGATCTTGCCGATGTCATGCAGGCCCGCCCAGAACATCACCAGCCGTCTCGCCTCGGCCATCGCAACACCCAGCGCCTCGGCCACCGCCGCGTGCTGCACCACCGTCAAAGCCCCATCCCACACGGCTCCGGCGACCATCGCCGTGTCCACGAGATGACCCATCAGCGGGTACGGCTTCTCAAGCCCGGCGGACTTCCCCCACAGCCGTGTATCGATCACGCCGCCCCCTCCTGAGCGCTCCCCTACTCCAGCCCCGCGTACTTCATCACACGCCTCTGACACCATGGGATGGTGATGAGAATCCGCTATGGTCAAGAAATGGCAAAGCGCCTCTGAAGCCGCAGGTCGCGAAGT # Right flank : GGCCCGGGGGTCAGTCGGTGGGGAGGTCTTCGAGGCCGGATTGGACGAGGTGGGCGAGGCGGTCGAGGGCGGGGGTGGCGTTGGGGGCGTCGGAGGTGAGGACGACGGGGTCGCCGCCTCGGGCGCCGAGGGAGAGGACGGCGAGCATGGAGGCGGCGTTGACCGGGGTGCCGTCGGGCTTGGCGATGGAGACGGGGATGCCGATGGCGGTGGCCGCCCGGACGAAGATCGAGGCGGGGCGGGCGTGCAGCCCTTCGGCCCATCCGACGGTGACGCGGCGCTCGGCCATGCGGGGTGCCTTCCGGGAGTGCCTCGTTGTCTAGACCAGTGTGGCATGGTCGGCCGCCCCCGTACGCGGCGCAGCCGACCTGCGGCCTCCCCGGTTAGCCTGGCCGGGTGGACGACACCCCGGCACACGGCGATCCGGAGCAGGCCGAGCGGGCTCAGCAAGCCAAGCACGCCGAGCACGCCGAGCGGGCCTACCCGCAGCACTGGGAGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //