Array 1 164095-162479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMS01000008.1 Salmonella enterica subsp. enterica serovar Newport str. CVM22443 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164094 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 164033 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 163972 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 163911 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 163850 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 163789 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 163728 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 163667 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 163606 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 163545 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 163484 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 163423 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 163362 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 163301 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 163240 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 163179 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 163118 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 163057 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 162996 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 162935 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 162874 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 162813 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 162752 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 162691 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 162630 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 162569 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 162508 29 100.0 0 ............................. | A [162481] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181950-180764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMS01000008.1 Salmonella enterica subsp. enterica serovar Newport str. CVM22443 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181949 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 181888 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 181827 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 181766 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 181705 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 181644 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 181583 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 181522 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 181461 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 181400 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 181339 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 181278 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 181217 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 181156 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 181095 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 181034 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 180973 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 180912 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 180851 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 180791 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //