Array 1 15979-19069 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNCO01000018.1 Pasteurella multocida strain SMC1 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15979 28 100.0 32 ............................ AGAAGATTTCATCAAAATACAAGTTGCCGTGA 16039 28 100.0 33 ............................ ATGCATTCCATTGATTTAGCCCACTTTTCTCAT 16100 28 100.0 32 ............................ ATAGTCGATACTAAAACGCTTGAACTGGCAAT 16160 28 100.0 32 ............................ AAAATGGTTGAGGTATTTAAAAAGCACAACAC 16220 28 100.0 32 ............................ ATTACGCTTAAATAAGCTTGACCAGTAGAGCC 16280 28 100.0 32 ............................ GCAGGATGTGGCGGATCAAGTGCGGGAATTAA 16340 28 100.0 32 ............................ TTTGTACGCATTGCGTAAATATAGACTCACCG 16400 28 100.0 32 ............................ CACGACTGATGCCCGCTGGTTTGCGGGGGAAG 16460 28 100.0 32 ............................ TTGAAGGTGATATTCACACTAAAAATCAAATA 16520 28 100.0 32 ............................ ACAAAATCAACAACGGGACTAGCAACCACGCT 16580 28 100.0 32 ............................ ACAGCAAAAAACTTATTATCTTTTTCAAACAT 16640 28 100.0 32 ............................ TGTTCAGAAATGAACGGGGTTTTTTATTACTT 16700 28 100.0 32 ............................ AATTGCTTACTAGCTACAATTGAGGTGGGTTA 16760 28 100.0 32 ............................ TCATAGTTAGTTTATGTTAATCTTTATGATAA 16820 28 100.0 32 ............................ TGATGTTGATGCAGTCGCTTTTATGAATCCAA 16880 28 100.0 32 ............................ TTTGAGCGCGTCTTCAATTGTGATTACATAGC 16940 28 100.0 32 ............................ TTATTGATTAAGTAGTCTGTGATTGCGACACA 17000 28 100.0 32 ............................ CGTGCGTTGTAGTGCGGCTTTCTTTTAAACAA 17060 28 100.0 33 ............................ GCACATTTCTTTAATCTCACGGTTATTAAGTGA 17121 28 100.0 32 ............................ ATTTTTTATTTCACTTGATGATTATCTTTCAA 17181 28 100.0 32 ............................ TTTTAGATACACAACTAGTAGACAAACAGGTC 17241 28 100.0 32 ............................ ATATTAATTTCCTCATGTTGTTAACCTTTATG 17301 28 100.0 32 ............................ TCTTGTAGCTCATGCAAATACTCACCGCCTCT 17361 28 100.0 32 ............................ ATAGGCTTTTGCGAGATAATTTCTTTAATGAC 17421 28 100.0 32 ............................ CGCGGAATATCGTTCTCTTTCTGAGTTAAGTA 17481 28 100.0 32 ............................ TTTCAATTTCTTCATCAGTGTAACGTCGCGTT 17541 28 100.0 32 ............................ GTCACCCCTGAAGAGTTTTCTCAATTATCCAT 17601 28 100.0 32 ............................ GTCATCCACAACATAATCATCCAGCTTATGCG 17661 28 100.0 32 ............................ AATAAAATCCCCACTTTTGAAAAATCTCAAAA 17721 28 100.0 32 ............................ GCTACAAGAGATTATTGCTGAATCTATTAATT 17781 28 100.0 33 ............................ CTGAATTAGCGGGCGGTTATCATTTGCCCCGCT 17842 28 100.0 32 ............................ ATACTATTTCCTATTGCTTTATATCGTGGTGA 17902 28 100.0 32 ............................ TATTAGTAATACTTTCTCTTTACCTCTAAATC 17962 28 100.0 32 ............................ TGAAAAAAGCCACTGATTCAGTAAATGCTCTT 18022 28 100.0 32 ............................ ATGCAACGTATGACAGGTAAATTAGTAAGTAT 18082 28 100.0 32 ............................ AAAGTGGGTGATCATATTTTGCTATTTTGACC 18142 28 100.0 32 ............................ ATGTTGCTCAACTCGAACAAGCAGCACTACAT 18202 28 100.0 32 ............................ ATGGACCGGTGAGATCTTCCGGTCGGTCTTCG 18262 28 100.0 32 ............................ ATCAAAAGAAACACTCATACTCATGTACGGAG 18322 28 96.4 32 C........................... ATCAACGGACACAAGTTAGACGACGCTGTTTA 18382 28 100.0 32 ............................ ACCGTATATTTTCTTCCAGAATTTACCATTCC 18442 28 100.0 32 ............................ AATACCCGCAGCGGTTGCAGTTGTAGAAACAA 18502 28 100.0 32 ............................ GACATTGAATGTGATTGACGTTAGGGCCTCAA 18562 28 100.0 32 ............................ TCAATAAAAGGTGAAGAAAAAACATAATTAAT 18622 28 100.0 32 ............................ GCATTAATAACGGAACACCACAAGCAAGAGCA 18682 28 100.0 32 ............................ AAGTCCGTTAAAAAGTCTGCTTCCGGATTATA 18742 28 100.0 32 ............................ AGTGTCACAAGAGTTCACTTTAAAGAAAGGAA 18802 28 100.0 32 ............................ GTGTTGCCACTTGGCTCGGCAGACGGCAAGTT 18862 28 100.0 32 ............................ GATGCACAAAGTGCGGTGAAAAACATTTATGA 18922 28 100.0 32 ............................ ATTTCAAACCTTTGAGCGTGAAAGCAGTTGGC 18982 28 100.0 32 ............................ AAAAAACCTTTCGATTAAAGAGGCGAGTGCGT 19042 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAACGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATACATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 44254-46071 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNCO01000019.1 Pasteurella multocida strain SMC1 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44254 36 100.0 30 .................................... TAGAATTATTAAAATAAGCAATTAACAACG 44320 36 100.0 30 .................................... GATAATCATCGTTGGGAAACGCCCGTCTTT 44386 36 100.0 30 .................................... AGGTTTGGCGGCGTATCGTAATGACGATCA 44452 36 100.0 30 .................................... AAGTTAAACAGGTTAGTGAGCCATTCTTTA 44518 36 100.0 30 .................................... AACACAAAGAAGGAAAACAACATGAAAAAA 44584 36 100.0 30 .................................... GTATAATCTGTTCATTGTGCGTCTTTGCTA 44650 36 100.0 30 .................................... AAAATCCCGTTCATTAAGTCTTATTTTTAC 44716 36 100.0 30 .................................... AGATGTTCAACACACCAGCACCAGCAAGGA 44782 36 100.0 30 .................................... ACCCACGATAAGGGTTCGACCGTATTGACC 44848 36 100.0 30 .................................... AAAACAGACGGCAATAAAACGTTAAATATT 44914 36 100.0 30 .................................... AAAATGGGGCGTTATAACAACTCGGTTGTT 44980 36 100.0 30 .................................... ATTGTTGCACTGCTGCCTGTTGTGCCAGTG 45046 36 100.0 30 .................................... TTAGCCATTCTTTATACAGCCGTACAGATT 45112 36 100.0 30 .................................... ACATAACCAACAGCATAATCAACACAACTT 45178 36 100.0 30 .................................... CAACAGAGCTTGCAAGTATCGCTGCAAAAC 45244 36 100.0 30 .................................... ATCCACAAACCGCACAAATTCAGATTTTGT 45310 36 100.0 30 .................................... CTTTTTTCTCTGCGATTGAGTTCACTTCGC 45376 36 100.0 30 .................................... AAAAACTAAATAAAATTAATAATTTAAGCA 45442 36 100.0 30 .................................... TTTATTTGAACGAAATTGCTATTTTCTTTA 45508 36 100.0 30 .................................... TAACTGGGTTTGAATGGTAAAGGAAATATA 45574 36 100.0 30 .................................... AAAATCGGTAGTCTTGATGGTAGATTTGTT 45640 36 100.0 30 .................................... ATAAAGCGACGGCGGAAACGCTAAAAACGC 45706 36 100.0 30 .................................... GGTTGCTACGCTTTGCTGTATGAAGGACGG 45772 36 100.0 30 .................................... AAACGCGATAATATTATTGCAGTTTTGAGC 45838 36 100.0 30 .................................... CAATACACGCTCAATGTGATCATCACCGAT 45904 36 100.0 30 .................................... TCATCACGCAATGCTTTATTTGCTGAACGG 45970 36 100.0 30 .................................... AAAACCTTTAGAATTAATAGCTTGAAATTT 46036 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : TAGATAAAAATAATCCAAGTAATGAAGAAGTTAGATATGGCTATGTGAAAAAAGAGGGATTTAATAAAGCAATACATGACAGCTTCAAAGATGTATCAACCAATATAGAAAAACAAAATAATAGAATCTATGATGATAAGAAATAGGAGAATTTTATATGTTAAAGAAATTAATCCTTTTCATGAAAAAATTGAGCTTGTTCTTAGATAAATTAAATGAAGAACAAAAGAAATTGAACCAAAAAGAAAAACCTCAATTTATCCGTACGAATATAAATGGATTGCCATTAAATAGACATGGCGTTGATATGGAGGGAAATATCTATGGTACAACAAGTAGTGAGGAAGAATAAAAAATTATCAACATACTGAACCCAAAAAACATGAAAATTAGAGAATAAATGATTTGATAGATAGGTTAGAAAATGAGCTTTAACGCAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTA # Right flank : TGTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATACTCAAAAATTACTTAAATTTACGATATTTAGTAGTCTATTTTTAGAAATTTTTTCTTAAAAAAACAATTGATTTTGTCTAATAGAGATAGCATCTGTTGTATGTTCCCCCTGTTTCTGAGTCACTCTAGGCTAGAATATAGAATAGTCTTTTCGTTTATTTTTATAGAGTATATAAATAGTCTACTTAGAAAAGTAGCATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTTTCAACTTCCCTAATAGAATTTTCATACCTGCAAATTGTTTTTCAGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 99064-105332 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNCO01000001.1 Pasteurella multocida strain SMC1 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99064 28 100.0 32 ............................ AGATGTTGCGTTGCTGTTATCAAATTCGATAT 99124 28 100.0 32 ............................ ACCGCGTGCGGCAATCGTGACTAGCTTGAGCA 99184 28 100.0 32 ............................ GTAATCGCACGATCACCGACCCATTCTTTAAG 99244 28 100.0 32 ............................ AAAAACGCAAATCAACGCACAAAAACGCTATT 99304 28 100.0 32 ............................ AGTCACTAGCGCATCAACTAATGCTTCATGAG 99364 28 100.0 32 ............................ TTTCTCAAAAAACAGAATAAATTCATATCTCG 99424 28 100.0 32 ............................ AAAAACTTTCGGTTTAACTTCACTGCAGCAAC 99484 28 100.0 32 ............................ ACATAAGCCATAATTGCCATATCAAACACCCC 99544 28 100.0 32 ............................ TGGAACGGTGAATTTACGCAAAATAAGGCGGT 99604 28 100.0 32 ............................ ATCCATTACTTGAAGATTATTTCCAAACATCG 99664 28 100.0 32 ............................ TTTCTTCCCCTTACGCTTACGCGCTTTATCTG 99724 28 100.0 32 ............................ TTTGCTCACTTTGAATAAAAGCTCGTTAAACT 99784 28 100.0 32 ............................ TGATGAGTTGGTCTTTGGTGCGTTAAAGGATG 99844 28 100.0 32 ............................ GTTTATATTGCTTAGTAGAAGCAACAGTCGAA 99904 28 100.0 32 ............................ ATACGATGAAAACGGTATTCCTTTAGAAATCC 99964 28 100.0 32 ............................ TAATTAAAATGCCGGATGACATGTCGCTTTGG 100024 28 100.0 32 ............................ ACCTGAAGATATGATCACAAAAACGGCGGAGA 100084 28 100.0 32 ............................ TACTGGAAAGGTTGGCGGCAATGCTACATCCG 100144 28 100.0 32 ............................ TCAGAAATACCGAGCAATTTCGCAGCTTCTTT 100204 28 100.0 32 ............................ GTTTGAAGTACGAGTTCAGCAATTTTTACAGT 100264 28 100.0 32 ............................ TTTACCGCTTTATTTTTGGGAGGACTAAGCGC 100324 28 100.0 32 ............................ TTGCTCTATGTGTCTATTATGTTCTAGGTTCA 100384 28 100.0 32 ............................ ACACGTCGTTAGCTAACAGACAAGACCAGTCA 100444 28 100.0 32 ............................ TCATTGGTTTTTGGATAGCGACATTGCTCAGC 100504 28 100.0 32 ............................ GTTTACCGCGGAGAGAAGAATTTGGGTGACGG 100564 28 100.0 32 ............................ ATTTTCGAGTTCGCAAACGACCTTCAATATAG 100624 28 100.0 33 ............................ CACTATTTTCATCTGTATATGTGAAAGATAAAG 100685 28 100.0 32 ............................ AATAAATTCGGCTGATTCAGCCACGTCTAAAA 100745 28 100.0 32 ............................ AAAATAAAAAGACTTGTCGCCAGTGGCAAAAT 100805 28 100.0 32 ............................ AATCGACGGTCGATAACGCTCAAGAAAATTCA 100865 28 100.0 32 ............................ TGCGTTAGATCAAGTCATCAATGGCTATGAGA 100925 28 100.0 32 ............................ GATACCATTTTTCGCTAAGTTGTACACAATCA 100985 28 100.0 32 ............................ TATCTCCATTTCTTTAAACATATTCAATCGTG 101045 28 100.0 32 ............................ TAGGCAAGCGAGTGCAAACAACGATTTACAAG 101105 28 100.0 32 ............................ TGTATTAACAGAGTTAGCACAGGGTTATTACA 101165 28 100.0 32 ............................ TCCAATCTCTCAAATGCCAAATTTATTGCACT 101225 28 100.0 32 ............................ TTTTTTGATTAGTCTTATTGATGCGCTATTTT 101285 28 100.0 32 ............................ ACTAGCCCCGCCAGCCCTTTTGCGATTGTTGC 101345 28 100.0 31 ............................ TAGATATCCCGTTCAACAAGACTCAAGTACG 101404 28 100.0 32 ............................ ACTTCTACAAAATCAAATGGCTTTCCGCTTTT 101464 28 100.0 32 ............................ GATAATTGCCGTGTTCATTTCACTAGTTTTTG 101524 28 100.0 32 ............................ AGAAGTTATTCAAAAAGGTGAGCAATATATTA 101584 28 100.0 32 ............................ AATAAAGTATTCTTGATAATGCGATTTAACAC 101644 28 100.0 32 ............................ GAGTTGCAGGTTATTGCGCAAACCAAGTAACC 101704 28 100.0 32 ............................ GCAATTAAAAAATCACTATCAATATCATAAGA 101764 28 100.0 32 ............................ TTAAAACTAATCTACCGCTTGAACTCGAATAT 101824 28 100.0 32 ............................ AACAATAAGTAGCGAACTGCTTAACTTGAGGT 101884 28 100.0 33 ............................ TAATGTCATACTATCCCCTACTTCTTCCTCGCT 101945 28 100.0 32 ............................ TTGCCCAAGCTACAAGGGGAGTGATTAAACCA 102005 28 100.0 32 ............................ GATGTTTGGCTTTCGCCTCTTCTAATTTGACT 102065 28 100.0 32 ............................ TTTGATAGTGTTTAAATGCCGTTTAAATCGCT 102125 28 100.0 32 ............................ TGAAAAAGTCATTGAAGATGCTTTTAATACAA 102185 28 100.0 32 ............................ TCACTGCAAAGAGTATTTCGAGCCGAGCATGT 102245 28 100.0 32 ............................ TTTGTGTGCTTATCGTTTACTGTAGTTTTGAA 102305 28 100.0 32 ............................ CGCTTCTAACTTTTGCCGAAGACTATCGTGAT 102365 28 100.0 32 ............................ CACCTCATCGGTGATTTTCTCAAATTCTTGTC 102425 28 100.0 32 ............................ TTGACGACGGTATCAAAAAAAGAGTGGGTGCT 102485 28 100.0 32 ............................ TCTCTCTTTGAGTACCAGACGTAAGTTATTGG 102545 28 100.0 32 ............................ ACTGAAAAACGGTAAATCTAACTTCTCAACCA 102605 28 100.0 32 ............................ ACTGAATATCGACTATGCAGGAATTGGCTTAG 102665 28 100.0 32 ............................ ACAACCCCTTGCATACCACGTAAGTTTTTCGG 102725 28 100.0 32 ............................ ACTCTCCGATATGCACTTTCGCTAAGCCATTT 102785 28 100.0 32 ............................ GACAAAGGTAAAACGTGGAATGAATACACAGA 102845 28 100.0 32 ............................ AAACGCAGAAGAATACTATAATCCTAGCCGTG 102905 28 100.0 32 ............................ AACGGCAACAAAATCAAAACGGTGCAGTTAAA 102965 28 100.0 32 ............................ ACTTTGTAGAATTATCGACGTTGAGCAACATC 103025 28 100.0 32 ............................ AAGAACGTTGGGTAACTCCACCAATTTGCTTG 103085 28 100.0 32 ............................ TTTTTGAAACTCATATCATCCGCACTTTATCT 103145 28 100.0 32 ............................ AGCCAACGCTTTTTCCAAGTCAAATTTTTTCA 103205 28 100.0 32 ............................ TCAAAAAAAAGCCCTCTTTCGAGGGCGGAGTG 103265 28 100.0 32 ............................ ACCAAAGAACGTGCAGCGGTGGAAGAATCAGA 103325 28 100.0 32 ............................ ATTCGTAGTACTGCCACAGGAGTTCGAGTAAC 103385 28 100.0 32 ............................ GTCAACCTTTCTTCAAAGAGTACAAACTCAAG 103445 28 100.0 32 ............................ TAACTTGTCTTCAAATTGTAAGTACATATTGT 103505 28 100.0 32 ............................ ATTCGGAGTTCCAGTGGAATACCGTTTTTGTC 103565 28 100.0 32 ............................ TATGGTTATTCCTCCAAGAGCATGGACGGGGA 103625 28 100.0 32 ............................ ACCACGGCGTCGCCCATAAATCCTTATCTTTT 103685 28 100.0 32 ............................ TGCACGCGATAAAACCACGCTTTTTTACTGTA 103745 28 100.0 32 ............................ TAATTCAGCCATATCACCAAGATTGGGAATAT 103805 28 100.0 32 ............................ ACTTTGGTTTTCTGAAATTGAGCCATTCCCAA 103865 28 100.0 32 ............................ TAAAATGCACGCAATTGTAGTTAAGCGTTTCG 103925 28 100.0 32 ............................ CCAAACGCTTTGAGATTTCAATAAATGTCGCC 103985 28 100.0 32 ............................ TTACAGCAAAAGGGGAAATTAGCTTAAAAATC 104045 28 100.0 32 ............................ ACTTCGGTTTCATTTGTTTTCGCAGAAAGCAC 104105 28 100.0 32 ............................ TGATTTTGAGCGCGACGACTATTGGTGGGAGG 104165 28 100.0 32 ............................ GGGCTCATCGGTATTAATCTCGGTGCAAGCGG 104225 28 100.0 32 ............................ TTTTTTGTTATATAGATATGCTACAAATGACC 104285 28 100.0 32 ............................ TATGAGCATTTACGTGACTTATTTACGCTTGA 104345 28 100.0 32 ............................ CGAAAAACTACGTCATCCAAAAGCCATTTTAT 104405 28 100.0 32 ............................ ATTACCAATGTTAAAGGGTTAACTGTGCTCGA 104465 28 100.0 33 ............................ CGTTTCCGTCAGATAGATAAGATTTAGTTGCTT 104526 28 100.0 32 ............................ TAGCACCGCGAATTGCTCCGAAATACCGATTT 104586 28 100.0 32 ............................ ATGAGGATTTCCATGCGTCCTTGAATACCGCC 104646 28 100.0 32 ............................ ATGTTCATTAACAACAATATCTACTGCCTCTT 104706 28 100.0 32 ............................ AGAATAAACATTAACTCGATAACGTTTACCAA 104766 28 100.0 32 ............................ CGCAGACAGCAACATGCGGTGATGTGAATCTG 104826 28 100.0 32 ............................ ATCACGGCGATGAGAAACAAGCTTAAAAGAAG 104886 28 100.0 32 ............................ AAGTATTCCTGCTGCACTTCTTGCGCACTTAG 104946 28 100.0 32 ............................ AGCTCAATACATGCGTGCACCAAAGCCACAAT 105006 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 105066 28 100.0 32 ............................ CGAGTAAGTGTGAATCCACGCCATTTATTTTT 105126 28 100.0 32 ............................ ACATTTGGTCCAAGGTGGTGATAATTCTTGGC 105186 28 96.4 32 ............G............... TCCAGAGTGTTACAAAACGGCGGAACAGTTAT 105246 28 100.0 32 ............................ AGATGACTTATGTGTCTGATCGCTCCGAAGAA 105306 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 105 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGGCGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAATGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTTGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAGGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //