Array 1 1936443-1933942 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022278.1 Neisseria chenwenguii strain 10023 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1936442 33 100.0 34 ................................. CCACCACCCGCATCGTCAGTTTTTTACTGGACAG 1936375 33 100.0 34 ................................. GTCTTCAAGTTCGACCAAATCCTGCGCACCAAAC 1936308 33 100.0 34 ................................. TTTCAATTTATTAATGTAGTTTTCCATTTTTTTA 1936241 33 100.0 34 ................................. AGGCATGATAATCACCATGTTTACAAGCTAACAA 1936174 33 100.0 33 ................................. GCTTGGTGTGGTGTTTCCGATTACAGTAAAGAC 1936108 33 100.0 33 ................................. ACACCAACTGTTGCAGAAATTGAAGAAAACAAC 1936042 33 100.0 34 ................................. CCTATTGAGAACGGTGTTGAGGACAAGACCAAAG 1935975 33 100.0 34 ................................. ACTTTTCGGGTGTAATTTTTACCGCCACCCACGA 1935908 33 100.0 34 ................................. CAGCAAGTAGAGTATGACAAGAACTACGTCCCGA 1935841 33 100.0 33 ................................. TAAAGAAGGTCAGAAATTGTTGATTGAGGCGGC 1935775 33 100.0 34 ................................. AGCAAAAACATTAATTGTATTAAAAACAGAAGCC 1935708 33 100.0 33 ................................. GCCAATACCACTTTGTTTAAAAGCGCGACTATT 1935642 33 100.0 34 ................................. ACGTACTGGTGTCGCCACGCGTAATCAGATGAAA 1935575 33 100.0 32 ................................. CAAGCTCAAGGCGTTGTTTCTCCCAGTTTTGT 1935510 33 100.0 33 ................................. GACGCGGTGGCACAAGCCTTAGCTGGTATCGCA 1935444 33 100.0 33 ................................. ATGGCAGGATAAAGCGTTATCCGTTCCGTTATG 1935378 33 100.0 35 ................................. ACCAAGACCTTACGTTCCGTTTAGAAGTTGACGAC 1935310 33 100.0 34 ................................. TTCCATTTTTAAACCCTGTTTGAAAAGGGCTTAA 1935243 33 100.0 34 ................................. GATGGTCGCCGTTTGGATTTGAGGCAGCAGCTCT 1935176 33 100.0 33 ................................. CGATATTGAGGAAAGTAGCGAACTGAGCCAGCC 1935110 33 100.0 34 ................................. CGTGCCTCCGCCTCCGCCTTTGCCGCCTGCTTGG 1935043 33 100.0 34 ................................. ATTCTTACGGCAACATCATAGCCTGTCAGAAACC 1934976 33 100.0 35 ................................. TACGTTTGGCACAACAAGGGTTGGTATGTCCAAAA 1934908 33 100.0 32 ................................. TTCTGCTCACCATGATATTGCATTGGGATTAA 1934843 33 100.0 33 ................................. AATACATCGCAGCTTATCGTGGCTGGACACTTG 1934777 33 100.0 34 ................................. ACTCTAAAGCATATGTTGAAGTGCGCGATTACAC 1934710 33 100.0 33 ................................. TTGCTCGTACAATAGACATCATTCAGCACCTTT 1934644 33 100.0 33 ................................. AATACATCGCAGCTTATCGTGGCTGGACACTTG 1934578 33 100.0 34 ................................. ACTCTAAAGCATATGTTGAAGTGCGCGATTACAC 1934511 33 100.0 33 ................................. TTGCTCGTACAATAGACATCATTCAGCACCTTT 1934445 33 100.0 35 ................................. AGGATAAGCAAACATTTGCACGGCACGTTTTGCTC 1934377 33 100.0 34 ................................. ATATCGAGCTTTAAGCAAATCAAAGAACGTCACA 1934310 33 100.0 34 ................................. CCTGATTGTCAATTTCCCCCCGCTTGAGAATATT 1934243 33 100.0 34 ................................. TAAGTATCGAAGCGGGTCTTCTTCAATGCGCTTG 1934176 33 100.0 33 ................................. GCTGAAGATAATCTGTTTAGCCCACTTCTCTTT 1934110 33 100.0 34 ................................. CGCCGACCGCCTCTACTTTTCTCGGCAACGCGCT 1934043 33 100.0 35 ................................. CATTGCAATTGCTGGTGGTCACTATCGTGGTGAGT 1933975 33 84.8 0 .....................C...G.CA...T | G [1933955] ========== ====== ====== ====== ================================= =================================== ================== 38 33 99.6 34 CAGCCACCCTCGCGGGTGGCTGTGTATTGAAAC # Left flank : AAAACAGGGGGAAACATTGTGCTGATGTTGATTACTTACGATATTTCGCTGGACGACCGCGAGGGCGCCACCCGCCTGCGCCGTGTGGCGAAAATCTGCCAAGATTATGGCGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCGCCCGACCAATGGGTTGTTTTGAAAAGGAAATTACTCGATGCTTACGAGCCAAAAACCGACAGCCTGCGCTTTTATCACTTGGGCAGCAAATGGCGGCGCAAGGTGGAACACCACGGCGCAAAACCGGCGGTGGATATTTTCGGCGATACGCTGATTGTCTAGCGCCAACCTGTGGTGCGCATGAAAATGCGGGGAGGTTGGCGCGGGCGGATTGTTCTTTAACAATCAGGATATTAGACGGCGGGTGTGCACGAACGGGGGCTGTGTTATACTTGCCGCACGGCTTTTTTCGGAAGCTTGGCGAATCGGGGCTTTGTAAGTCTTGATTGGCTGTGCTTTCGGAAGATGCC # Right flank : TGAAAACCTATTTTCCCAACCCATAAACAACGAATACGAAAATTTTCTAACATTTTTTCCAATATTCAAGCAGACAACTTTTTTCAGACGGCCTTTGTCCACTTTAATTGATAAGAAAACCACCCTACCCCACACGGTAAAACGCCAGACTTCCGAGCAGGTTGGGCAGGTATTTCACCTGTTTGCTGCCGGCCATGACGGCACGTTCGTGGATGCGGATTTTGTTTTTGGCGCAGAGCAGATCGAAATCTTTCAGGGTACACCAATGGATGTTGGGGGTGTTGTACCAATGGTAGGGCATGCGCTCGGAAACGGGCATGTGGCCGCCGAAACCGATTTGCAGACGGTTTCGCCAGTAGCCGAAGTTGGGGAAGCTGACGATGGCCTGGGTGGCGACGCGCATCAGTCCTTTTAAAATCAGCTCGGTATTCTGCATGGCTTGGATGGTTTGGCTTAAGACGATGACGTCGAAGCTGTGATCGCCGAAGGCTTCGAGACCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCACCCTCGCGGGTGGCTGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CAGCCACCCTCGCGGGTGGCTGTGTATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //