Array 1 729550-729700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELX010000003.1 Nocardia uniformis strain JCM 3224 W9869_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 729550 28 75.0 34 .CA............A......G.GTG. GGACTGCCAGGCTGTGCATGGCGGTCACGGTGGG 729612 28 100.0 33 ............................ CATGGTTACCTCGGCGAGTCGGGCCTGGTGGGG 729673 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 3 28 91.7 34 CTCAGCCCCGCGCGTGCGGGGAACACAC # Left flank : AGGTGCTCGTCATGAGGAAACCGAGCCAGCCGATACAGGCCGTGATGCACCCGCTCCAGCACGCCGGTGTCGGCCATACGTTTGAGTAGCTGAGGAGTCGCACCGACGACTGCCCTCGCCTGTCGGCTAGTTATCAGCCCCCATTGTTCGGCTGCTACCCCGATCAGTTCCGAGGCGCGACTATCACTGGACATGGCACAATAATAACGGAATCTGCCTACTATTACGCCAAGACGGGTAATTATCGTGCCACGCGATTGTGCACGCCGAGCGGGCACAGAACAGCAGGGGCTATGACGGGACCGCGGCCGCCGGAGACGAAGCTGCATGACCGCAACACCAGGGTGCCCCAATCCACATGTGCTACTACACTATTCGGTAGCACGGCCCGCAAACTGGCTGCGACACACGGGATTTCGCCTCGACAAACACCCGCTTCTGCATCAGCGCCCAACTAGCATCGGACGGCGAGCAACGTGATCACTGCTCGGTCCGGTGGG # Right flank : CTTCCTGAACAGCGTGATCCTGCTCGGAGATGCTGGTTTTCATTCACTTCCCAACGCTCATCGCGTAGTTGTTGCCGAAGCGAACGGTGGACCACCCCGCGGATGGTCGAACTGCCATTCGGCGACACCTTTGACGAATGCATCCCACTCGGCGACGGTGTAGGAGAGGGTAGTGCCGTGGTCTGAGATCGCGGCCCCGCCTTCGGGATTGACCGAGACCGACACTCCATCACTCAGCTCACCAGAGTTGCTGCTCAGAACGAGGTCAAGGAACGTCGGCCACTCGACCATTGCCATAGAGATAATGGGTTGTGCCGCAAGGTCGTTGACGGGATTGCGGGTGTACTTACTGTCGCGGATGAACACCCGGTCACCATCGAAGGCAACTTCGACGCATTCGCCGCCATTGGACCCGCTGTAGCTTGATGTCCTCCACTTGAGGGCGCTGGTGTTCATTTTCGGTCGCTCCGAACTCATTCTTGCAGGCTGGCAATCCGGGC # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGCCCCGCGCGTGCGGGGAACACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 299068-299704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELX010000007.1 Nocardia uniformis strain JCM 3224 W9869_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 299068 28 100.0 33 ............................ CCCCACACTGGTCAGCTGCCCAGGATGTGGCGC 299129 28 100.0 33 ............................ CAACCATCTGCGGGTGGGCCTATTCGTGCAGCG 299190 28 100.0 33 ............................ CGCAGATTGACCCTGAAACGCGAAAAGAGCCCC 299251 28 100.0 33 ............................ CTCGAGCGTGCAGACGATCCAGCTGACCGTCCC 299312 28 100.0 33 ............................ CCTGGGGGTCTGGTTATTCCTTGGGCAGGCCCG 299373 28 100.0 33 ............................ CCACGATGCGTTTACTCATAGAACCTCCGTAAA 299434 28 100.0 33 ............................ TCGACAGTGTGGCACCGACCTCGAGATGATCCG 299495 28 100.0 33 ............................ CACCCTGACGACGTGGGCACGTGCTGTAGCTGA 299556 28 100.0 33 ............................ CGGCACCCAGCTTCTTCGGGGGCAAGTCGTACT 299617 28 100.0 33 ............................ CATCGGGCACGATGGGCTGGACGGAATGCTCAG 299678 27 96.4 0 ...............-............ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TCAGTTTAGTGAGGCGACCGGCAGTCGCCTCGGCGAACAGGTACTCGGCACTATGCCGCACAAGAGCCACTCGCCACCCCTACAGACGCATGCGGAAGTCAACATGCGGGTAGGGGCAGCAACGAAGCGGTGTTCGGTGCCCGGCGGGCCGCGGTGATGACATTACTCGTACGGCTAATGACCGGAACCATGCGCCACTGGAGCATCCAGCGCCAGAAGCGAATTCACACAACGTGCATATGTCCCCAATCACCATGCGCGTCAATCCAACCCGCACCGCAGGCTGAACGCCCTCTACCACGGCGGCACAGCGTTCGAGCGTGCGCAGCGACTGACCTGAGTGGTCCCGGGGTTATGGCGTTGCCTCAGATTTCTGGCCGTCTACCTGCGACACTATGGTCAACCAGATCAGCACGCTAATCGTGCCGACAGAGATGATGTGAGTGATGAAAGTGAATGAAAAACCGGGAGATTCGCAGGAAACATGCAGGTGAAGAAGT # Right flank : CGCCACTGCGCCCGTTCAGGTCTCGCCTTCCGACATGCTCCCCACGTGTGCGGGGAGCACAACATCTCCACTTGCTCACTGGCGTCCGGGAAGGGCTCAGCCCCGCGCGTGCGGGGAGCACATCACCGCATCCGCCGACCAGATCAGGATGGCGGGCTCAGCCCCGCGCGTGCGGGGAGCACACTTCCTGAACAGTGTCTTCCTGCTCGAACATACTGTTTTCATTCACATTCCATCGTTCATGGCGTAGTTGTTGCCGAAGTGAACGGCTTCTCAGTGTCTGCTGGCACTTCTCCATCCTGCACACCGTTGCCCGGATTGCGTCGTCTGTATCGGTGGCAAGTCTGCACAACGACTCGGTGGTGGTGTCACTATCGGCTACCGGTGTTGGACCCTTCGTTGCGAGTGGGCAACGGTCACGCCTTCTCCCTCTGCTAGCGTTTCGGCGTTGGGACAACAGTGCTCCCGGCACCATGCCGGGATGAGCCGAGCTCGACGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 309967-310606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELX010000007.1 Nocardia uniformis strain JCM 3224 W9869_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 309967 28 100.0 33 ............................ CTGGAAATCCTCCGGATGGGTCACCGAAGAAAA 310028 28 100.0 33 ............................ CGCCGCGACTAGGTTGTCTTGTACTTGGTTGGT 310089 28 100.0 33 ............................ CGCCAGATCCGCACGCCGCAAATCCCGGTCGGT 310150 28 100.0 33 ............................ CACCCCGACTGGATTGTCGACACCAGCGGAACT 310211 28 100.0 33 ............................ CTGCGACATCACCGGACGACTGCAGATCACGGG 310272 28 100.0 33 ............................ CGGCGGCGTGACCCCGCACCTCCACCTGGAAGT 310333 28 100.0 33 ............................ CTCCCATTCCACGTACTCGCCGTTGAAGTAGGT 310394 28 96.4 33 ......G..................... CGATGAGCTGCTCGCCGCGACCCTGCGCGGCTC CA [310412] 310457 28 100.0 32 ............................ CGGTCGGTTCGCGCTGTGGCTTGCCCGCCGTC 310517 28 92.9 32 .....................C.....T CACCTTCGACGGTCCGGACGAGGAGGGGTGGT T,T [310520,310522] 310579 27 82.1 0 ..T.............-A..CC...... | C [310589] ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.4 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : GGGACACCGACGTCGTCGAACTGTGGGACCGCGCAGGCAACGTCGCCGGCGGAATCTCCTACGACGACGAGGAAGTCCCGTGGTAGTACTCGTCCTCAGCGCCTGCCCAGCAGGTCTGCGAGGTCACCTGACCCGCTGGCTCCTCGAAATCAGCCCAGGTGTGTTCGTCGGCGTTCTGACCGCGCGGGTCCGCGACCTCGCCTGGCAACGCGTCGTCGAACTGTCGAAAGACGGCCGCGCCATCATGATCTACTCGACCCGTTCCGAACAGGGCCTCGCCTTCAAAGTGCACCGCCACGAATGGGAGCCTGTCGATATCGACGGCCTCCACCTCATGCGCCGCCCTCACACGGGTCGTACGAAACCCACCGGCCCGCGCGCCGGGTGGAGCAAAGTTAGTAGATACCGGAAGGCCGCGCGGCGTCGCAGTAGCACCGCCGAGCTCGACGAAAGTGAATGAGAATTGGCGCTATCGTGAGAGAACACGCTGGTCATGAAGT # Right flank : CACTGGACAACGGCTGCAGCGACCTGCGCCTCAACAGTTCAAAGACATTGCATTGCGCAAGCTGCGATGCTCAGCTTCGATACGAGCTTGGATCTCGGCAACTGAACACCCTGGGCTACACCCCGGCGTTCTTGACCTTTTCAGCCATGCGGTAACCGCCGTTGGCATCCACCGGACCGAGCCTCCTGCGATCATGCCGATCGCCAAGAATGTCAACTGACCGATCATTTTGGCTCCCCGCCTATTTCAGGACCCTGACAGACCGGGCACATACCCACCGGACCGAGCCCATGTCTCCACTGCAGCAGAAGGTTGCGGACGTATGCGCCCATTTGGCACCGACCAGCGTCGCAGTCCCGGTGCTTCTGAAATTCCTTATGAGCGACGGAAACATTCGTGATCGGTCGCTCAGGCATCCGACAGAAGGCTGGGTTGAGCTTCATGATCGGACCTCCACAGATGTTGCTCCAGCGGGGATCAAGCGGGCCTCTTCGACTAGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //