Array 1 851080-853242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050240.1 Erwinia amylovora strain FB-20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 851080 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 851141 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 851202 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 851263 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 851324 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 851385 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 851446 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 851507 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 851568 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 851629 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 851690 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 851751 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 851812 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 851873 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 851934 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 851995 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 852056 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 852117 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 852178 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 852239 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 852300 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 852361 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 852422 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 852483 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 852544 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 852605 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 852666 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 852727 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 852788 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 852849 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 852910 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 852971 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 853032 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 853093 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 853154 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 853215 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 864150-866133 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050240.1 Erwinia amylovora strain FB-20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 864150 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 864211 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 864272 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 864333 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 864394 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 864455 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 864516 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 864578 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 864639 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 864700 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 864761 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 864822 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 864883 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 864944 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 865005 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 865066 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 865127 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 865189 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 865250 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 865311 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 865372 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 865433 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 865494 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 865556 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 865617 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 865678 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 865739 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 865800 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGAGCT 865861 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 865922 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 865983 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 866044 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 866105 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 875597-875925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050240.1 Erwinia amylovora strain FB-20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 875597 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 875657 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 875717 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 875777 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 875837 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 875898 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //