Array 1 109046-106332 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFFK01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 13V1250 NODE_8_length_179553_cov_36.6757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109045 29 100.0 32 ............................. CCTTCTTCTGGTTAGGCGTTAGGCCGCTGAGG 108984 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 108923 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 108862 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 108801 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 108740 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 108679 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 108618 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 108557 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 108496 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 108435 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 108374 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 108313 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 108252 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 108191 29 100.0 32 ............................. AATGCGACAACTCGTCTGCTGGTCACAAAAGG 108130 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 108069 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 108008 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 107947 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 107886 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 107825 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 107764 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 107703 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 107642 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 107581 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 107520 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 107459 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 107398 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 107337 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 107276 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 107215 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 107154 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 107093 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 107032 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 106971 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 106910 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 106849 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 106788 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 106727 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 106666 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 106605 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 106544 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 106483 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106422 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106361 29 93.1 0 A...........T................ | A [106334] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127596-125553 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFFK01000008.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 13V1250 NODE_8_length_179553_cov_36.6757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127595 29 100.0 32 ............................. CCAGTAACAACTGTTACGGTGTCACGCCTGTT 127534 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 127473 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 127412 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 127351 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 127290 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 127229 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 127168 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 127107 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 127046 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 126985 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 126924 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 126863 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 126802 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 126741 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 126680 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 126619 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 126558 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 126497 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 126436 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 126375 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 126313 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 126252 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 126191 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 126130 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 126069 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 126007 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 125946 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 125885 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 125824 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 125763 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 125702 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 125641 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 125580 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //