Array 1 336325-337253 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006976.1 Pasteurella multocida subsp. multocida HB01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 336325 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 336385 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 336446 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 336506 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 336566 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 336626 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 336686 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 336746 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 336806 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 336866 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 336926 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 336986 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 337046 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 337106 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 337166 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 337226 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1611799-1610632 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006976.1 Pasteurella multocida subsp. multocida HB01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1611798 28 100.0 32 ............................ ATTTTTCTTTTGCTGTAAAGACAAGCTGATCA 1611738 28 100.0 32 ............................ TGTTTCAAGCGAACGTACAGCAACAGTGACTG 1611678 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 1611618 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 1611558 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 1611498 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 1611438 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 1611378 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 1611318 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 1611258 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 1611198 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 1611138 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 1611078 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 1611018 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1610958 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1610898 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1610838 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1610778 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1610718 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1610658 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //