Array 1 47231-46349 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHRGK010000025.1 Prevotella copri strain RPA01 RPA01_25, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	==============================	====================================	==================
     47230	    30	 100.0	    35	..............................	TACAACATTTTGCCATACTTAACTACATACTGAAC 	
     47165	    30	 100.0	    35	..............................	TACAACGTCTTAAAGACGCAGGCTACACCGATGGA 	
     47100	    30	 100.0	    36	..............................	TACAACATTTAGCAGTTTGAGGAGAATTCGGTTAAA	
     47034	    30	 100.0	    36	..............................	TACAACGTATTTTCGTATATCATCATACCAAAGTAT	
     46968	    30	 100.0	    36	..............................	TACAACCGAATACGGAGCACTTGATACGAAGACCGG	
     46902	    30	 100.0	    36	..............................	TACAACTGCAAGGTGGTTGAGGATATAGGTCTATCT	
     46836	    30	 100.0	    36	..............................	TACAACCTAAGGCTATTTTTTGTTGTACAGCACGTA	
     46770	    30	 100.0	    36	..............................	TACAACTTCCAGAAGGTATTGGACCACATGTTGCAG	
     46704	    30	 100.0	    35	..............................	TACAACACAGCGACGGCGCAGTATTCATTGATGCA 	
     46639	    30	 100.0	    35	..............................	TACAACAACATGTGCAAGCTTGAACACAACAAGTA 	
     46574	    30	 100.0	    35	..............................	TACAACTCACTTATGATGATATTTGTAAGGATTTG 	
     46509	    30	 100.0	    35	..............................	TACAACGACAACATTCCTTTCTTTTTCTGCACACG 	
     46444	    30	 100.0	    36	..............................	TACAACACAACTGCAAATACGCAATTGGGCAGTGAA	
     46378	    30	  96.7	     0	..........................T...	|                                   	
==========	======	======	======	==============================	====================================	==================
        14	    30	  99.8	    36	GTTGTGGTTTGATGTAGGAATCAAAAGATA	                                    	       

# Left flank :   ATATTATTCTGGAGAAATAAAAAAACTTTCCTTACCTATTATGACATGACTGAAGATAGACTAAATGCTTATCATATAATGTGGTTATTTGTGTTTTTCGATTTACCTGTTACTACGAAAAAAGAGATGAAGGCTGCTTCTCTTTTTCGTAAAAACTTGGAGAAAGATGGTTTCTCTATGATGCAATTTTCTGTCTATATCCGTCATTGTGCATCAAGGGAAAGTTTGGAAGTGCATGTAAAACGGGTAAAATCTTTGCTTCCGGAGGCTGGAAAAGTAAGTTTGTTAAGTGTAACAGATAAGCAATATGGAGATATCTATAACTTCTGGGGTAAGCCCAAAAGTATTAATAAGAGTAAAATATCGAAAAAAGTTATCAGCGAACCTATTCAATTGGAGTTTTTTTAGTACTTTTGCATTAGAAATTATATCCTACTCACCATTTCTTATTAGATAGAGTGTTTGTTATGCGCTGAAAATCAGTATGTTCAAATCTGTAG
# Right flank :  TATTATATACACGAGAATGGCATAGGGGCTGGCGCAGTTTCTGAATATCTTGGAATATAGGCAAGAAAGAGTCTTGTTCTCCACGGACTTCAATCTTTTCAAAAGAAGAACGGAAAAGATAAAAGTATCTCTGTCAGTATATGATAGTGCGGTAAAATGTATTGAGGAAGTGGAATGTGGCAAAAGAACTCAGCAAAACTATTCTTCTGAACTAAGAAACACCATTTGCCCAATAGATAAGAAAAACAATGCTGATGTGACGATAAGGGCCAACACGCCGTAGATTGATTGGGGATTGTTGACACAGTATCCTATGCAGGCAACCCAAACAGCGAAGGACAAAAGGCTGTTGTCACCCAACGCTCATATTTCTTAGAGTGCTTCGGGGGAGTATCTTCGCCTACTACTTCAATGCTAACGATTTCTACCTTTATTTCATGTTCGGGCTTGTTCGATTCTTCGTTGTTGTTTGCAGCGTCTGATATGCTGTTGTTGTTCTG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGGTTTGATGTAGGAATCAAAAGATA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         R [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-2.30,-3.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.55   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//