Array 1 31011-29412 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYY01000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP768 NODE_27_length_53173_cov_70.152510, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31010 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 30949 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 30888 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 30827 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 30766 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 30704 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 30643 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 30582 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 30521 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 30460 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 30399 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30338 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30277 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30216 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30155 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30093 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 29990 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 29929 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 29868 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 29807 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 29746 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 29685 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 29624 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 29563 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 29502 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 29441 29 96.6 0 A............................ | A [29414] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49063-47143 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYY01000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP768 NODE_27_length_53173_cov_70.152510, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49062 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 49001 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 48940 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 48879 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 48818 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 48757 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 48696 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 48635 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 48574 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 48513 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 48452 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 48391 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 48330 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 48269 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 48208 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 48147 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 48086 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48025 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 47964 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 47903 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 47842 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 47781 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 47720 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 47659 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 47598 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 47536 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 47475 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 47414 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 47353 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 47292 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 47231 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 47170 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //