Array 1 247782-246041 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTE01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain 36 NODE_2_length_825265_cov_18.6604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 247781 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 247720 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 247659 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 247598 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 247537 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 247476 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 247415 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 247354 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 247293 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 247232 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 247171 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 247110 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 247048 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 246986 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 246925 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 246864 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 246803 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 246742 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 246681 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 246620 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 246559 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 246498 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 246436 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 246375 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 246314 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 246253 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 246192 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 246131 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 246070 29 93.1 0 A..............A............. | A [246043] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265139-263952 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTE01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain 36 NODE_2_length_825265_cov_18.6604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265138 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 265077 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 265016 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 264955 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 264894 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 264833 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 264772 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 264711 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 264650 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 264589 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 264528 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 264467 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 264406 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 264345 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 264284 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 264223 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 264162 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 264101 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 264040 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 263979 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //